Wall clock time and date at job start Mon Mar 30 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47057 * 2 1 4 4 H 1.09003 * 109.47472 * 54.99532 * 3 2 1 5 5 C 1.53002 * 109.47137 * 294.99918 * 3 2 1 6 6 C 1.53002 * 109.47505 * 174.99838 * 3 2 1 7 7 S 1.81393 * 109.47307 * 179.41130 * 6 3 2 8 8 O 1.42104 * 109.47244 * 290.75549 * 7 6 3 9 9 C 1.81398 * 103.00163 * 174.36786 * 7 6 3 10 10 C 1.52997 * 109.47365 * 185.95733 * 9 7 6 11 11 C 1.50699 * 115.55216 * 306.34985 * 10 9 7 12 12 H 1.08003 * 119.99821 * 88.65284 * 11 10 9 13 13 C 1.37877 * 119.99784 * 268.65468 * 11 10 9 14 14 N 1.31518 * 119.99379 * 181.17485 * 13 11 10 15 15 Si 1.86798 * 120.00124 * 1.17381 * 13 11 10 16 16 H 1.48512 * 109.46809 * 265.05203 * 15 13 11 17 17 H 1.48493 * 109.47107 * 25.05212 * 15 13 11 18 18 H 1.48494 * 109.47323 * 145.05779 * 15 13 11 19 19 C 1.53004 * 117.49705 * 92.02076 * 10 9 7 20 20 C 1.53002 * 117.49761 * 160.67467 * 10 9 7 21 21 H 1.09008 * 109.46860 * 60.00400 * 1 2 3 22 22 H 1.09004 * 109.46645 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47234 * 300.00217 * 1 2 3 24 24 H 1.08997 * 109.47797 * 240.00281 * 2 1 3 25 25 H 1.09000 * 109.47045 * 119.99264 * 2 1 3 26 26 H 1.08997 * 109.46961 * 59.94721 * 5 3 2 27 27 H 1.09000 * 109.47174 * 179.97438 * 5 3 2 28 28 H 1.08995 * 109.46791 * 299.94745 * 5 3 2 29 29 H 1.08995 * 109.46903 * 59.40590 * 6 3 2 30 30 H 1.09003 * 109.46688 * 299.41163 * 6 3 2 31 31 H 1.09001 * 109.47050 * 65.95786 * 9 7 6 32 32 H 1.09008 * 109.47299 * 305.96233 * 9 7 6 33 33 H 0.97004 * 119.99253 * 180.02562 * 14 13 11 34 34 H 1.08997 * 117.50050 * 215.00332 * 19 10 9 35 35 H 1.09001 * 117.49678 * 0.02562 * 19 10 9 36 36 H 1.09001 * 117.49885 * 359.97438 * 20 10 9 37 37 H 1.09006 * 117.49668 * 144.97678 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9817 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4445 0.1258 7 16 4.1708 3.1541 0.1083 8 8 3.9863 3.7089 -1.1869 9 6 5.9445 2.9618 0.4364 10 6 6.5852 4.3413 0.6016 11 6 6.3437 5.3095 -0.5277 12 1 5.4731 5.9485 -0.5142 13 6 7.2342 5.3795 -1.5780 14 7 7.0357 6.2408 -2.5519 15 14 8.7224 4.2513 -1.6176 16 1 9.8941 4.9571 -1.0393 17 1 8.4386 3.0296 -0.8227 18 1 9.0177 3.8705 -3.0222 19 6 6.6724 4.9147 2.0174 20 6 7.9364 4.4117 1.3158 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5137 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 0.5490 2.1244 -1.3974 27 1 1.9982 3.1544 -1.3072 28 1 2.0706 1.5881 -2.1491 29 1 3.9990 0.8964 -0.7104 30 1 3.8527 0.9665 1.0621 31 1 6.4139 2.4407 -0.3980 32 1 6.0844 2.3843 1.3503 33 1 7.6620 6.2897 -3.2911 34 1 6.5551 5.9923 2.1321 35 1 6.2737 4.3089 2.8312 36 1 8.3687 3.4752 1.6684 37 1 8.6509 5.1581 0.9686 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234013337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:35 Heat of formation + Delta-G solvation = -53.927050 kcal Electronic energy + Delta-G solvation = -16212.707176 eV Core-core repulsion = 13695.151534 eV Total energy + Delta-G solvation = -2517.555642 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.62794 -37.73907 -36.31234 -34.20296 -31.38541 -29.68384 -28.17363 -27.32160 -24.43981 -23.24320 -21.15784 -20.66163 -18.55984 -17.78959 -16.90489 -16.52153 -16.08852 -15.81074 -15.20852 -15.03350 -14.77456 -14.56869 -14.36906 -14.00361 -13.69489 -13.18064 -13.11672 -12.73393 -12.71149 -12.45691 -12.13781 -12.11386 -12.04934 -11.92382 -11.57282 -11.52343 -11.37846 -10.92458 -10.81170 -10.51366 -9.94863 -8.83405 -8.29436 -6.33463 0.90941 1.23106 1.26980 1.38606 2.17495 2.32109 3.06800 3.29490 3.31406 3.85623 3.98276 4.11334 4.18579 4.38396 4.48322 4.48939 4.64163 4.64796 4.68262 4.72884 4.84118 4.90332 4.96532 4.99070 5.10515 5.21943 5.23202 5.25523 5.30654 5.45099 5.52039 5.57926 5.61743 5.75671 6.28144 6.77132 7.35474 8.88224 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.033493 B = 0.006775 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.795333 B = 4132.153283 C = 4426.093093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.067 4.067 4 H 0.108 0.892 5 C -0.175 4.175 6 C -0.453 4.453 7 S 1.279 4.721 8 O -0.895 6.895 9 C -0.401 4.401 10 C -0.023 4.023 11 C -0.474 4.474 12 H 0.034 0.966 13 C 0.011 3.989 14 N -0.954 5.954 15 Si 0.932 3.068 16 H -0.265 1.265 17 H -0.228 1.228 18 H -0.312 1.312 19 C -0.147 4.147 20 C -0.201 4.201 21 H 0.047 0.953 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.027 0.973 29 H 0.057 0.943 30 H 0.151 0.849 31 H 0.049 0.951 32 H 0.146 0.854 33 H 0.259 0.741 34 H 0.080 0.920 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.913 -13.859 14.219 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.086 4.086 4 H 0.127 0.873 5 C -0.232 4.232 6 C -0.590 4.590 7 S 1.481 4.519 8 O -0.891 6.891 9 C -0.538 4.538 10 C -0.025 4.025 11 C -0.512 4.512 12 H 0.053 0.947 13 C -0.185 4.185 14 N -0.595 5.595 15 Si 0.758 3.242 16 H -0.190 1.190 17 H -0.151 1.151 18 H -0.240 1.240 19 C -0.184 4.184 20 C -0.240 4.240 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.169 0.831 31 H 0.068 0.932 32 H 0.164 0.836 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.152 0.848 36 H 0.124 0.876 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.361 -12.959 13.881 21.172 hybrid contribution 2.059 -1.074 -2.960 3.762 sum -7.302 -14.033 10.921 19.223 Atomic orbital electron populations 1.21849 0.94968 1.02079 1.02301 1.21575 0.96525 0.94924 1.02093 1.20832 0.91580 0.97965 0.98218 0.87344 1.22253 1.02102 1.01041 0.97831 1.27913 1.03094 1.20189 1.07850 1.69136 0.88860 0.87471 1.06447 1.93117 1.81487 1.69646 1.44802 1.27287 1.18696 1.01166 1.06695 1.18802 0.98382 0.92302 0.92986 1.20562 1.07714 1.19191 1.03709 0.94746 1.25883 1.01313 0.96375 0.94939 1.70087 1.38759 1.38742 1.11932 0.86001 0.80220 0.81891 0.76101 1.19014 1.15109 1.24014 1.23114 0.99673 1.01003 0.94611 1.23025 0.91710 1.02507 1.06745 0.93391 0.92054 0.91218 0.93849 0.89916 0.90590 0.93064 0.95362 0.92413 0.83102 0.93236 0.83648 0.93243 0.90187 0.84759 0.87640 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.67 71.98 0.70 -1.67 16 2 C -0.11 -2.03 5.40 30.60 0.17 -1.86 16 3 C -0.07 -1.47 2.46 -10.79 -0.03 -1.50 16 4 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 5 C -0.17 -5.18 8.42 71.98 0.61 -4.57 16 6 C -0.45 -10.98 5.43 71.98 0.39 -10.59 16 7 S 1.28 43.04 12.31 -56.49 -0.70 42.35 16 8 O -0.90 -45.97 14.64 -148.98 -2.18 -48.15 16 9 C -0.40 -14.32 5.69 71.98 0.41 -13.91 16 10 C -0.02 -0.99 0.93 -52.93 -0.05 -1.04 16 11 C -0.47 -27.70 7.84 25.60 0.20 -27.50 16 12 H 0.03 2.28 8.06 -2.91 -0.02 2.26 16 13 C 0.01 0.68 5.47 84.65 0.46 1.15 16 14 N -0.95 -65.08 13.96 21.45 0.30 -64.78 16 15 Si 0.93 47.70 24.80 68.60 1.70 49.40 16 16 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.23 -10.44 5.65 99.48 0.56 -9.88 16 18 H -0.31 -16.54 7.11 99.48 0.71 -15.83 16 19 C -0.15 -4.89 9.92 30.62 0.30 -4.58 16 20 C -0.20 -7.65 7.29 30.62 0.22 -7.43 16 21 H 0.05 0.81 6.56 -2.38 -0.02 0.80 16 22 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 1.86 6.56 -2.39 -0.02 1.84 16 27 H 0.05 1.86 5.47 -2.39 -0.01 1.85 16 28 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.05 2.04 7.04 -2.39 -0.02 2.02 16 32 H 0.15 3.44 8.08 -2.39 -0.02 3.42 16 33 H 0.26 16.70 8.31 -92.71 -0.77 15.93 16 34 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.06 2.70 6.79 -2.38 -0.02 2.68 16 Total: -1.00 -85.68 300.55 3.38 -82.30 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.87 Total: 12.39 kcal Atomic # 6 Polarization: -76.89 SS G_CDS: 3.38 Total: -73.50 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: 0.30 Total: -64.78 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -2.18 Total: -48.15 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.70 Total: 49.40 kcal Atomic # 16 Polarization: 43.04 SS G_CDS: -0.70 Total: 42.35 kcal Total: -85.68 3.38 -82.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234013337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.370 kcal (2) G-P(sol) polarization free energy of solvation -85.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds