Wall clock time and date at job start Mon Mar 30 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.37626 * 125.12511 * 2 1 4 4 H 0.96998 * 125.08423 * 359.97438 * 3 2 1 5 5 C 1.37656 * 109.83140 * 179.97438 * 3 2 1 6 6 C 1.39174 * 133.38070 * 180.02562 * 5 3 2 7 7 C 1.37732 * 119.78220 * 179.97438 * 6 5 3 8 8 C 1.38847 * 120.65826 * 0.06802 * 7 6 5 9 9 C 1.36623 * 120.53080 * 359.96381 * 8 7 6 10 10 C 1.39607 * 119.77558 * 0.02562 * 9 8 7 11 11 C 1.34593 * 125.12851 * 179.68963 * 2 1 3 12 12 N 1.40731 * 126.51552 * 0.03123 * 11 2 1 13 13 C 1.46894 * 111.00214 * 60.01866 * 12 11 2 14 14 C 1.52994 * 109.47020 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47284 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99862 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00186 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00260 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99955 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47191 * 89.99905 * 19 17 15 21 21 H 1.48505 * 109.47288 * 209.99758 * 19 17 15 22 22 H 1.48498 * 109.47318 * 329.99635 * 19 17 15 23 23 H 1.09002 * 109.47152 * 90.02563 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.02663 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.02644 * 1 2 3 26 26 H 1.08003 * 120.11103 * 0.02562 * 6 5 3 27 27 H 1.07993 * 119.66909 * 180.02562 * 7 6 5 28 28 H 1.08002 * 119.74115 * 179.97438 * 8 7 6 29 29 H 1.07995 * 120.10829 * 179.97438 * 9 8 7 30 30 H 1.00902 * 110.99328 * 296.06245 * 12 11 2 31 31 H 1.09004 * 109.47450 * 300.00395 * 13 12 11 32 32 H 1.09005 * 109.46995 * 60.00126 * 13 12 11 33 33 H 1.09002 * 109.47479 * 299.99972 * 14 13 12 34 34 H 1.08997 * 109.47664 * 60.00362 * 14 13 12 35 35 H 0.96991 * 120.00468 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2989 1.1256 0.0000 4 1 1.9705 2.0383 -0.0004 5 6 3.6267 0.7625 0.0006 6 6 4.8155 1.4861 0.0013 7 6 6.0214 0.8206 0.0023 8 6 6.0642 -0.5672 0.0012 9 6 4.9094 -1.2971 -0.0002 10 6 3.6759 -0.6433 -0.0010 11 6 2.2815 -1.1008 0.0060 12 7 1.8383 -2.4365 0.0126 13 6 1.0226 -2.7264 -1.1742 14 6 0.5609 -4.1844 -1.1318 15 6 -0.2765 -4.4817 -2.3490 16 1 -0.4605 -3.7082 -3.0799 17 6 -0.8067 -5.7415 -2.5301 18 7 -1.5371 -6.0012 -3.5926 19 14 -0.4878 -7.0796 -1.2663 20 1 -1.5547 -7.0498 -0.2338 21 1 -0.4856 -8.4042 -1.9376 22 1 0.8304 -6.8487 -0.6227 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 0.8902 0.5134 25 1 -0.3633 -0.8898 0.5143 26 1 4.7927 2.5659 0.0019 27 1 6.9428 1.3839 0.0032 28 1 7.0180 -1.0738 0.0016 29 1 4.9506 -2.3763 -0.0014 30 1 1.3313 -2.6449 0.8597 31 1 0.1528 -2.0696 -1.1866 32 1 1.6166 -2.5597 -2.0729 33 1 1.4309 -4.8409 -1.1197 34 1 -0.0329 -4.3516 -0.2332 35 1 -1.9104 -6.8873 -3.7198 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258839912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:58 Heat of formation + Delta-G solvation = 47.229163 kcal Electronic energy + Delta-G solvation = -16733.933248 eV Core-core repulsion = 14117.612868 eV Total energy + Delta-G solvation = -2616.320380 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.17479 -37.21438 -35.70064 -32.94149 -31.32604 -30.92700 -29.79178 -28.27868 -26.29611 -23.94453 -22.10507 -21.26442 -20.38343 -19.45681 -17.57399 -16.70441 -16.29085 -15.47253 -15.02413 -14.61214 -14.22635 -13.90980 -13.69234 -13.39530 -13.22372 -12.90484 -12.56506 -12.44775 -12.36618 -11.59046 -11.38773 -11.32012 -11.00255 -10.84156 -10.08734 -9.90943 -9.83276 -9.35268 -9.21353 -8.52057 -8.06339 -8.03121 -7.41506 -6.02751 -4.01130 1.22480 1.73657 2.72061 3.12297 3.33624 3.41553 3.47977 4.04671 4.48180 4.55848 4.81665 4.87936 5.14166 5.22477 5.30813 5.31969 5.52365 5.54750 5.65187 5.77251 5.93806 5.97046 6.16080 6.21803 6.34764 6.57135 6.69142 6.75247 6.79597 6.86772 7.22678 7.30289 7.38127 7.56484 7.70702 7.88197 8.03452 8.54925 9.01329 9.59683 11.10588 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032366 B = 0.005084 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.895617 B = 5506.662624 C = 6021.008131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.038 3.962 3 N -0.594 5.594 4 H 0.411 0.589 5 C 0.100 3.900 6 C -0.139 4.139 7 C -0.101 4.101 8 C -0.158 4.158 9 C -0.053 4.053 10 C -0.088 4.088 11 C 0.027 3.973 12 N -0.623 5.623 13 C 0.076 3.924 14 C -0.011 4.011 15 C -0.520 4.520 16 H 0.070 0.930 17 C 0.068 3.932 18 N -0.905 5.905 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.262 1.262 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.341 0.659 31 H 0.029 0.971 32 H 0.064 0.936 33 H 0.026 0.974 34 H 0.009 0.991 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.117 15.244 9.710 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.070 4.070 3 N -0.199 5.199 4 H 0.247 0.753 5 C -0.007 4.007 6 C -0.160 4.160 7 C -0.120 4.120 8 C -0.178 4.178 9 C -0.071 4.071 10 C -0.094 4.094 11 C -0.076 4.076 12 N -0.254 5.254 13 C -0.051 4.051 14 C -0.049 4.049 15 C -0.558 4.558 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.544 5.544 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.187 1.187 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.163 0.837 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.028 0.972 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.484 14.910 9.343 20.482 hybrid contribution -0.915 0.175 0.674 1.150 sum 9.570 15.085 10.017 20.481 Atomic orbital electron populations 1.20509 0.87735 1.03258 1.03514 1.21041 0.93506 0.86277 1.06205 1.41650 1.03901 1.07687 1.66678 0.75277 1.18174 0.84526 0.93963 1.04050 1.19936 0.89765 0.98597 1.07742 1.20737 0.96424 0.94476 1.00353 1.20618 0.97976 0.93866 1.05317 1.20387 0.90249 1.00150 0.96325 1.19063 0.93060 0.91316 1.05947 1.18772 0.90617 0.88314 1.09859 1.57945 1.45205 1.16143 1.06080 1.22116 0.93717 0.98591 0.90687 1.19571 0.96401 0.91788 0.97098 1.21048 1.30669 0.97813 1.06308 0.91138 1.24997 0.94552 0.98454 0.95356 1.69914 1.34735 1.21934 1.27770 0.86761 0.79502 0.81207 0.81761 1.20400 1.21453 1.18680 0.90066 0.91658 0.89784 0.86669 0.86174 0.86309 0.85587 0.83664 0.95231 0.91706 0.95573 0.97224 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 8.70 36.01 0.31 -0.80 16 2 C 0.04 0.54 7.01 -81.28 -0.57 -0.02 16 3 N -0.59 -7.34 6.10 -6.70 -0.04 -7.38 16 4 H 0.41 3.67 8.96 -40.82 -0.37 3.31 16 5 C 0.10 1.40 7.27 -83.98 -0.61 0.79 16 6 C -0.14 -1.64 10.08 -39.42 -0.40 -2.04 16 7 C -0.10 -1.13 10.01 -39.54 -0.40 -1.53 16 8 C -0.16 -1.96 9.97 -39.94 -0.40 -2.36 16 9 C -0.05 -0.78 10.05 -39.65 -0.40 -1.18 16 10 C -0.09 -1.42 6.37 -105.03 -0.67 -2.09 16 11 C 0.03 0.45 6.19 -81.62 -0.51 -0.05 16 12 N -0.62 -11.19 6.57 -56.89 -0.37 -11.56 16 13 C 0.08 1.55 5.36 -3.83 -0.02 1.53 16 14 C -0.01 -0.26 4.30 -27.88 -0.12 -0.38 16 15 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.75 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 19 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 23 H 0.08 1.01 7.80 -51.93 -0.40 0.61 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.05 7.74 -51.93 -0.40 0.64 16 26 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 27 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.34 5.62 8.77 -39.29 -0.34 5.28 16 31 H 0.03 0.58 5.65 -51.93 -0.29 0.29 16 32 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 34 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 293.81 15.07 4.43 4.43 Total: -1.00 -32.39 293.81 -8.79 -41.18 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.70 Total: 4.84 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -4.20 Total: -21.45 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.36 Total: -46.19 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.39 -8.79 -41.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258839912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.408 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds