Wall clock time and date at job start Mon Mar 30 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.37619 * 125.13101 * 2 1 4 4 H 0.97001 * 125.07989 * 359.97438 * 3 2 1 5 5 C 1.37653 * 109.83698 * 179.97438 * 3 2 1 6 6 C 1.39167 * 133.38244 * 180.02562 * 5 3 2 7 7 C 1.37728 * 119.78143 * 179.97438 * 6 5 3 8 8 C 1.38857 * 120.66168 * 0.06891 * 7 6 5 9 9 C 1.36615 * 120.52428 * 359.96253 * 8 7 6 10 10 C 1.39607 * 119.78163 * 0.02562 * 9 8 7 11 11 C 1.34596 * 125.12131 * 179.70026 * 2 1 3 12 12 N 1.40723 * 126.52453 * 0.02562 * 11 2 1 13 13 C 1.46893 * 111.00315 * 248.39485 * 12 11 2 14 14 C 1.46897 * 111.00266 * 124.43338 * 12 11 2 15 15 C 1.50696 * 109.47546 * 195.95661 * 14 12 11 16 16 H 1.08006 * 119.99708 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00291 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00029 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00025 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47285 * 59.99753 * 19 17 15 21 21 H 1.48506 * 109.47099 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47174 * 299.99415 * 19 17 15 23 23 H 1.08998 * 109.46975 * 85.05230 * 1 2 3 24 24 H 1.08997 * 109.46969 * 325.05601 * 1 2 3 25 25 H 1.08998 * 109.47495 * 205.05525 * 1 2 3 26 26 H 1.08001 * 120.11098 * 359.97438 * 6 5 3 27 27 H 1.08009 * 119.67460 * 180.02562 * 7 6 5 28 28 H 1.07996 * 119.73894 * 179.97438 * 8 7 6 29 29 H 1.07995 * 120.11060 * 179.97438 * 9 8 7 30 30 H 1.08999 * 109.47891 * 59.99299 * 13 12 11 31 31 H 1.08994 * 109.47571 * 179.97438 * 13 12 11 32 32 H 1.09005 * 109.47104 * 299.99344 * 13 12 11 33 33 H 1.09001 * 109.47208 * 315.95440 * 14 12 11 34 34 H 1.08999 * 109.46902 * 75.94905 * 14 12 11 35 35 H 0.97000 * 120.00011 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2990 1.1255 0.0000 4 1 1.9706 2.0382 -0.0004 5 6 3.6268 0.7624 0.0006 6 6 4.8156 1.4859 0.0013 7 6 6.0214 0.8204 0.0023 8 6 6.0642 -0.5675 0.0012 9 6 4.9093 -1.2973 -0.0002 10 6 3.6759 -0.6435 -0.0010 11 6 2.2814 -1.1009 0.0058 12 7 1.8383 -2.4365 0.0122 13 6 2.1513 -3.0889 1.2906 14 6 2.4089 -3.1860 -1.1149 15 6 1.6339 -4.4632 -1.3128 16 1 0.8010 -4.6952 -0.6655 17 6 1.9888 -5.3361 -2.3193 18 7 3.0033 -5.0539 -3.1071 19 14 1.0285 -6.9196 -2.5640 20 1 -0.3921 -6.5975 -2.8528 21 1 1.6054 -7.6772 -3.7036 22 1 1.1087 -7.7427 -1.3307 23 1 -0.3633 0.0886 -1.0238 24 1 -0.3633 0.8424 0.5886 25 1 -0.3634 -0.9309 0.4352 26 1 4.7927 2.5657 0.0010 27 1 6.9430 1.3836 0.0032 28 1 7.0180 -1.0741 0.0016 29 1 4.9504 -2.3765 -0.0015 30 1 1.6587 -2.5533 2.1022 31 1 1.7976 -4.1196 1.2688 32 1 3.2296 -3.0777 1.4498 33 1 2.3502 -2.5816 -2.0201 34 1 3.4516 -3.4227 -0.9031 35 1 3.2528 -5.6678 -3.8154 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258990350.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:00 Heat of formation + Delta-G solvation = 57.120000 kcal Electronic energy + Delta-G solvation = -17355.148747 eV Core-core repulsion = 14739.257266 eV Total energy + Delta-G solvation = -2615.891481 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.88916 -36.78761 -36.00824 -32.52719 -30.99459 -30.50460 -28.71483 -27.16806 -26.37977 -24.42251 -21.87709 -21.79464 -20.75719 -18.69158 -17.17238 -16.29933 -15.94642 -14.84541 -14.75661 -14.32245 -14.14092 -13.64550 -13.52865 -13.16305 -12.81663 -12.59584 -12.19935 -11.92173 -11.88929 -11.23489 -11.11623 -11.06080 -10.91988 -10.73390 -10.60797 -10.41647 -9.95003 -9.27577 -9.01607 -8.38100 -7.75059 -7.32066 -7.05319 -5.96383 -3.98282 1.50607 1.99772 3.08808 3.36798 3.39716 3.40845 3.44035 4.30507 4.47102 5.05034 5.08154 5.17423 5.36026 5.38929 5.50726 5.61524 5.81322 5.92260 5.95897 6.01956 6.22759 6.26931 6.37244 6.38144 6.52756 6.73343 6.78358 6.94446 7.02188 7.23688 7.43420 7.46145 7.54734 7.90653 7.92600 8.22620 8.26446 8.73937 9.09004 9.65184 11.13854 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025716 B = 0.006953 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.561191 B = 4025.846290 C = 4678.443799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.072 3.928 3 N -0.600 5.600 4 H 0.410 0.590 5 C 0.101 3.899 6 C -0.141 4.141 7 C -0.103 4.103 8 C -0.158 4.158 9 C -0.057 4.057 10 C -0.124 4.124 11 C 0.031 3.969 12 N -0.476 5.476 13 C 0.044 3.956 14 C 0.202 3.798 15 C -0.508 4.508 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.277 1.277 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.015 0.985 33 H 0.027 0.973 34 H -0.003 1.003 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 12.254 7.263 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 N -0.205 5.205 4 H 0.246 0.754 5 C -0.006 4.006 6 C -0.162 4.162 7 C -0.122 4.122 8 C -0.177 4.177 9 C -0.075 4.075 10 C -0.132 4.132 11 C -0.070 4.070 12 N -0.197 5.197 13 C -0.104 4.104 14 C 0.078 3.922 15 C -0.546 4.546 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.015 0.985 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.354 12.227 7.048 14.118 hybrid contribution 0.423 -0.414 -0.293 0.661 sum 0.777 11.814 6.754 13.631 Atomic orbital electron populations 1.20295 0.87485 1.03288 1.02422 1.20045 0.93077 0.84613 1.05711 1.41641 1.03807 1.07653 1.67414 0.75381 1.18127 0.84597 0.94023 1.03876 1.19897 0.89883 0.98353 1.08088 1.20690 0.96342 0.94367 1.00801 1.20570 0.97855 0.93862 1.05460 1.20486 0.90639 0.99943 0.96443 1.19969 0.94807 0.92350 1.06069 1.19140 0.87962 0.91213 1.08670 1.59831 1.58059 0.97483 1.04350 1.22198 0.97796 0.99809 0.90554 1.19733 0.93197 0.92254 0.86980 1.21140 1.15038 1.03304 1.15150 0.91874 1.24979 0.95314 0.98398 0.95885 1.69965 1.27378 1.37113 1.19238 0.86571 0.80174 0.83161 0.77533 1.20216 1.21432 1.20293 0.91077 0.92645 0.88902 0.86894 0.86374 0.86505 0.86017 0.93671 0.90650 0.96651 0.95476 0.98495 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.34 36.01 0.37 -0.70 16 2 C 0.07 1.23 7.13 -81.28 -0.58 0.65 16 3 N -0.60 -8.91 6.10 -6.70 -0.04 -8.96 16 4 H 0.41 4.47 8.96 -40.82 -0.37 4.10 16 5 C 0.10 1.72 7.27 -83.99 -0.61 1.11 16 6 C -0.14 -2.05 10.08 -39.42 -0.40 -2.45 16 7 C -0.10 -1.47 10.01 -39.54 -0.40 -1.86 16 8 C -0.16 -2.54 9.97 -39.94 -0.40 -2.94 16 9 C -0.06 -1.09 9.46 -39.66 -0.38 -1.47 16 10 C -0.12 -2.48 6.01 -105.02 -0.63 -3.11 16 11 C 0.03 0.65 4.90 -81.62 -0.40 0.25 16 12 N -0.48 -10.76 4.61 -178.60 -0.82 -11.58 16 13 C 0.04 0.89 9.35 60.06 0.56 1.45 16 14 C 0.20 5.43 4.37 -4.98 -0.02 5.41 16 15 C -0.51 -14.40 8.54 -34.44 -0.29 -14.69 16 16 H 0.06 1.75 7.53 -52.48 -0.39 1.36 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 19 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 1.39 8.01 -51.93 -0.42 0.98 16 26 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 28 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.12 2.49 6.67 -52.49 -0.35 2.14 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.57 7.20 -51.93 -0.37 1.20 16 32 H 0.01 0.31 7.68 -51.93 -0.40 -0.09 16 33 H 0.03 0.81 7.98 -51.93 -0.41 0.39 16 34 H 0.00 -0.08 6.54 -51.93 -0.34 -0.42 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -31.93 295.21 -8.69 -40.62 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.72 Total: 1.88 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -3.27 Total: -16.86 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.13 Total: -46.84 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.93 -8.69 -40.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258990350.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.739 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds