Wall clock time and date at job start Mon Mar 30 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.37619 * 125.13101 * 2 1 4 4 H 0.97001 * 125.07989 * 359.97438 * 3 2 1 5 5 C 1.37653 * 109.83698 * 179.97438 * 3 2 1 6 6 C 1.39167 * 133.38244 * 180.02562 * 5 3 2 7 7 C 1.37728 * 119.78143 * 179.97438 * 6 5 3 8 8 C 1.38857 * 120.66168 * 0.06891 * 7 6 5 9 9 C 1.36615 * 120.52428 * 359.96253 * 8 7 6 10 10 C 1.39607 * 119.78163 * 0.02562 * 9 8 7 11 11 C 1.34596 * 125.12131 * 179.70026 * 2 1 3 12 12 N 1.40723 * 126.52453 * 0.02562 * 11 2 1 13 13 C 1.46893 * 111.00315 * 248.39485 * 12 11 2 14 14 C 1.46897 * 111.00266 * 124.43338 * 12 11 2 15 15 C 1.50696 * 109.47546 * 195.95661 * 14 12 11 16 16 H 1.08006 * 119.99708 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00291 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00029 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00025 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47285 * 59.99753 * 19 17 15 21 21 H 1.48506 * 109.47099 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47174 * 299.99415 * 19 17 15 23 23 H 1.08998 * 109.46975 * 85.05230 * 1 2 3 24 24 H 1.08997 * 109.46969 * 325.05601 * 1 2 3 25 25 H 1.08998 * 109.47495 * 205.05525 * 1 2 3 26 26 H 1.08001 * 120.11098 * 359.97438 * 6 5 3 27 27 H 1.08009 * 119.67460 * 180.02562 * 7 6 5 28 28 H 1.07996 * 119.73894 * 179.97438 * 8 7 6 29 29 H 1.07995 * 120.11060 * 179.97438 * 9 8 7 30 30 H 1.08999 * 109.47891 * 59.99299 * 13 12 11 31 31 H 1.08994 * 109.47571 * 179.97438 * 13 12 11 32 32 H 1.09005 * 109.47104 * 299.99344 * 13 12 11 33 33 H 1.09001 * 109.47208 * 315.95440 * 14 12 11 34 34 H 1.08999 * 109.46902 * 75.94905 * 14 12 11 35 35 H 0.97000 * 120.00011 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2990 1.1255 0.0000 4 1 1.9706 2.0382 -0.0004 5 6 3.6268 0.7624 0.0006 6 6 4.8156 1.4859 0.0013 7 6 6.0214 0.8204 0.0023 8 6 6.0642 -0.5675 0.0012 9 6 4.9093 -1.2973 -0.0002 10 6 3.6759 -0.6435 -0.0010 11 6 2.2814 -1.1009 0.0058 12 7 1.8383 -2.4365 0.0122 13 6 2.1513 -3.0889 1.2906 14 6 2.4089 -3.1860 -1.1149 15 6 1.6339 -4.4632 -1.3128 16 1 0.8010 -4.6952 -0.6655 17 6 1.9888 -5.3361 -2.3193 18 7 3.0033 -5.0539 -3.1071 19 14 1.0285 -6.9196 -2.5640 20 1 -0.3921 -6.5975 -2.8528 21 1 1.6054 -7.6772 -3.7036 22 1 1.1087 -7.7427 -1.3307 23 1 -0.3633 0.0886 -1.0238 24 1 -0.3633 0.8424 0.5886 25 1 -0.3634 -0.9309 0.4352 26 1 4.7927 2.5657 0.0010 27 1 6.9430 1.3836 0.0032 28 1 7.0180 -1.0741 0.0016 29 1 4.9504 -2.3765 -0.0015 30 1 1.6587 -2.5533 2.1022 31 1 1.7976 -4.1196 1.2688 32 1 3.2296 -3.0777 1.4498 33 1 2.3502 -2.5816 -2.0201 34 1 3.4516 -3.4227 -0.9031 35 1 3.2528 -5.6678 -3.8154 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258990350.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:59 Heat of formation + Delta-G solvation = 36.597858 kcal Electronic energy + Delta-G solvation = -17356.038654 eV Core-core repulsion = 14739.257266 eV Total energy + Delta-G solvation = -2616.781388 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.21442 -38.18584 -37.61363 -34.66840 -32.35527 -31.75256 -30.13411 -29.16378 -27.72156 -26.24200 -23.65283 -23.14721 -22.12305 -20.18571 -18.49577 -18.44227 -17.30479 -16.68331 -16.06670 -15.88647 -15.73197 -15.22006 -14.91678 -14.79043 -14.32121 -13.97596 -13.72178 -13.39509 -13.17352 -13.05978 -12.88208 -12.56120 -12.44279 -12.30456 -12.29028 -12.03237 -11.90267 -11.37414 -10.60207 -10.41561 -9.11828 -9.02809 -8.45083 -8.16355 -6.29635 0.21048 0.70504 1.41540 1.45935 1.53591 1.69706 2.17980 2.42439 2.98882 3.13470 3.42670 3.80009 3.96257 4.20387 4.35703 4.47298 4.52361 4.54954 4.66363 4.74164 4.77543 4.84478 5.02771 5.06401 5.17954 5.21075 5.22967 5.30230 5.49392 5.62589 5.72083 5.74173 5.93743 6.10997 6.24557 6.29735 6.80044 6.86435 6.94016 7.40027 8.92910 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025716 B = 0.006953 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.561191 B = 4025.846290 C = 4678.443799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.094 3.906 3 N -0.580 5.580 4 H 0.433 0.567 5 C 0.091 3.909 6 C -0.128 4.128 7 C -0.101 4.101 8 C -0.154 4.154 9 C -0.099 4.099 10 C -0.158 4.158 11 C -0.035 4.035 12 N -0.473 5.473 13 C 0.050 3.950 14 C 0.228 3.772 15 C -0.525 4.525 16 H 0.067 0.933 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.974 3.026 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.266 1.266 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.156 0.844 27 H 0.161 0.839 28 H 0.134 0.866 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.004 0.996 33 H -0.015 1.015 34 H -0.035 1.035 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 14.423 7.927 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.014 4.014 3 N -0.187 5.187 4 H 0.273 0.727 5 C -0.017 4.017 6 C -0.148 4.148 7 C -0.119 4.119 8 C -0.173 4.173 9 C -0.117 4.117 10 C -0.165 4.165 11 C -0.136 4.136 12 N -0.194 5.194 13 C -0.097 4.097 14 C 0.102 3.898 15 C -0.563 4.563 16 H 0.085 0.915 17 C -0.198 4.198 18 N -0.577 5.577 19 Si 0.798 3.202 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.190 1.190 23 H 0.095 0.905 24 H 0.115 0.885 25 H 0.098 0.902 26 H 0.174 0.826 27 H 0.179 0.821 28 H 0.152 0.848 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.022 0.978 33 H 0.003 0.997 34 H -0.018 1.018 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.344 14.448 7.736 16.393 hybrid contribution 0.710 -0.956 -0.473 1.282 sum 0.366 13.492 7.263 15.327 Atomic orbital electron populations 1.20390 0.85046 1.04428 1.03424 1.20437 0.94474 0.84312 1.02219 1.41551 1.02883 1.08227 1.66019 0.72657 1.18392 0.86132 0.92914 1.04276 1.20417 0.88649 1.00404 1.05357 1.21168 0.98195 0.93390 0.99190 1.20876 0.97328 0.95269 1.03813 1.20408 0.92403 0.98605 1.00324 1.20144 0.94509 0.94400 1.07440 1.19381 0.89553 0.90885 1.13754 1.59669 1.57584 0.98586 1.03513 1.22158 0.97354 0.99492 0.90690 1.19227 0.91563 0.91791 0.87182 1.21475 1.15272 1.04102 1.15498 0.91482 1.25981 0.96229 1.02281 0.95303 1.70124 1.29077 1.38610 1.19844 0.85375 0.78768 0.78258 0.77829 1.19065 1.20937 1.19046 0.90521 0.88479 0.90232 0.82608 0.82109 0.84779 0.89655 0.90867 0.91752 0.97769 0.99682 1.01777 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 10.34 71.24 0.74 -1.21 16 2 C 0.09 3.15 7.13 40.82 0.29 3.44 16 3 N -0.58 -15.88 6.10 -175.11 -1.07 -16.95 16 4 H 0.43 7.76 8.96 -92.71 -0.83 6.93 16 5 C 0.09 2.95 7.27 39.05 0.28 3.23 16 6 C -0.13 -3.27 10.08 22.37 0.23 -3.04 16 7 C -0.10 -2.57 10.01 22.30 0.22 -2.35 16 8 C -0.15 -4.95 9.97 22.04 0.22 -4.73 16 9 C -0.10 -4.07 9.46 22.22 0.21 -3.86 16 10 C -0.16 -6.52 6.01 -20.12 -0.12 -6.64 16 11 C -0.03 -1.49 4.90 39.11 0.19 -1.30 16 12 N -0.47 -22.57 4.61 -718.98 -3.31 -25.88 16 13 C 0.05 2.16 9.35 127.69 1.19 3.35 16 14 C 0.23 13.16 4.37 85.56 0.37 13.54 16 15 C -0.53 -31.09 8.54 25.60 0.22 -30.87 16 16 H 0.07 3.82 7.53 -2.91 -0.02 3.80 16 17 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 18 N -0.94 -58.78 13.29 21.45 0.28 -58.50 16 19 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.08 2.30 8.01 -2.39 -0.02 2.28 16 26 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 27 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 28 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.09 3.99 6.67 -2.91 -0.02 3.97 16 30 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.06 2.82 7.20 -2.39 -0.02 2.80 16 32 H 0.00 0.16 7.68 -2.38 -0.02 0.15 16 33 H -0.01 -0.97 7.98 -2.39 -0.02 -0.99 16 34 H -0.04 -2.23 6.54 -2.39 -0.02 -2.25 16 35 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -74.38 295.21 2.70 -71.68 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.26 Total: 12.25 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 4.51 Total: -30.00 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -4.10 Total: -101.33 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.38 2.70 -71.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258990350.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.279 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds