Wall clock time and date at job start Mon Mar 30 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00053 * 2 1 4 4 H 1.09002 * 109.46967 * 320.35967 * 3 2 1 5 5 C 1.50705 * 109.46865 * 200.36038 * 3 2 1 6 6 H 1.07994 * 119.99737 * 245.47411 * 5 3 2 7 7 C 1.37874 * 119.99904 * 65.47802 * 5 3 2 8 8 N 1.31518 * 119.99927 * 187.62840 * 7 5 3 9 9 Si 1.86801 * 120.00096 * 7.62731 * 7 5 3 10 10 H 1.48501 * 109.46895 * 91.28493 * 9 7 5 11 11 H 1.48500 * 109.47288 * 211.28346 * 9 7 5 12 12 H 1.48502 * 109.47066 * 331.28448 * 9 7 5 13 13 C 1.50700 * 109.47183 * 80.36210 * 3 2 1 14 14 C 1.34241 * 126.49618 * 226.82967 * 13 3 2 15 15 C 1.50695 * 125.04036 * 0.02647 * 14 13 3 16 16 N 1.36828 * 109.92649 * 180.02562 * 14 13 3 17 17 H 0.97010 * 125.06146 * 180.02562 * 16 14 13 18 18 C 1.37686 * 109.87729 * 0.02562 * 16 14 13 19 19 C 1.39129 * 133.51132 * 179.97438 * 18 16 14 20 20 C 1.37749 * 119.77996 * 180.02562 * 19 18 16 21 21 C 1.38836 * 120.66412 * 0.02562 * 20 19 18 22 22 C 1.36618 * 120.52824 * 359.97438 * 21 20 19 23 23 C 1.39633 * 119.76693 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47341 * 182.79484 * 1 2 3 25 25 H 1.09004 * 109.46945 * 302.79145 * 1 2 3 26 26 H 1.08997 * 109.46789 * 62.78881 * 1 2 3 27 27 H 1.00909 * 110.99568 * 123.94768 * 2 1 3 28 28 H 0.96995 * 119.99625 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47308 * 266.57111 * 15 14 13 30 30 H 1.09010 * 109.46927 * 26.56277 * 15 14 13 31 31 H 1.08996 * 109.47532 * 146.56144 * 15 14 13 32 32 H 1.08004 * 120.10709 * 0.05262 * 19 18 16 33 33 H 1.07994 * 119.66352 * 180.02562 * 20 19 18 34 34 H 1.08000 * 119.72818 * 180.27783 * 21 20 19 35 35 H 1.08006 * 120.11954 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3869 1.9942 -0.6556 5 6 3.4191 1.3629 -0.4944 6 1 4.2235 1.6390 0.1713 7 6 3.6946 1.0028 -1.7964 8 7 4.9412 0.8497 -2.1866 9 14 2.2973 0.7324 -3.0063 10 1 2.0003 2.0049 -3.7119 11 1 2.6925 -0.3018 -3.9959 12 1 1.0882 0.2792 -2.2728 13 6 1.9535 1.9256 1.4008 14 6 1.4947 3.1325 1.7685 15 6 0.9294 4.1663 0.8290 16 7 1.6165 3.2848 3.1228 17 1 1.3515 4.0740 3.6209 18 6 2.1711 2.1513 3.6734 19 6 2.5059 1.7826 4.9725 20 6 3.0620 0.5450 5.2107 21 6 3.2930 -0.3403 4.1665 22 6 2.9719 0.0012 2.8833 23 6 2.4073 1.2506 2.6190 24 1 -0.3634 -1.0264 0.0501 25 1 -0.3633 0.5566 0.8639 26 1 -0.3633 0.4699 -0.9139 27 1 1.8306 -0.5261 0.7815 28 1 5.1349 0.5967 -3.1028 29 1 1.7212 4.8491 0.5211 30 1 0.5149 3.6711 -0.0492 31 1 0.1432 4.7262 1.3354 32 1 2.3300 2.4643 5.7915 33 1 3.3207 0.2607 6.2199 34 1 3.7256 -1.3085 4.3711 35 1 3.1542 -0.6928 2.0760 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259468111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:28 Heat of formation + Delta-G solvation = 61.762133 kcal Electronic energy + Delta-G solvation = -17719.932021 eV Core-core repulsion = 15104.241838 eV Total energy + Delta-G solvation = -2615.690183 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.85355 -36.69178 -35.67933 -32.07105 -31.45143 -30.54207 -29.18130 -27.55309 -26.00820 -23.71343 -21.88686 -21.78766 -20.64599 -18.57627 -17.06912 -16.85078 -15.80794 -14.72056 -14.55376 -14.38820 -14.09513 -13.49631 -13.28538 -13.08717 -12.77709 -12.57570 -12.54158 -12.31913 -11.88742 -11.31437 -11.05961 -11.00750 -10.92043 -10.69831 -10.42688 -10.17654 -9.64726 -9.16261 -8.88026 -8.37868 -7.66671 -7.24848 -6.95854 -5.92306 -3.96335 1.60068 2.09057 3.26703 3.48490 3.54056 3.58247 3.77174 4.40603 4.69862 5.15807 5.19327 5.25378 5.41187 5.50065 5.60874 5.76166 5.85355 5.88197 5.96586 6.03325 6.10212 6.23466 6.25507 6.40413 6.49019 6.52782 6.57543 6.81060 6.98592 7.11256 7.28359 7.42184 7.65720 7.77418 8.01494 8.33650 8.42280 8.75146 9.13869 9.74134 11.18423 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.008780 C = 0.007913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.872153 B = 3188.391801 C = 3537.635185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.679 5.679 3 C 0.249 3.751 4 H 0.040 0.960 5 C -0.501 4.501 6 H 0.069 0.931 7 C 0.088 3.912 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.295 1.295 11 H -0.297 1.297 12 H -0.228 1.228 13 C -0.136 4.136 14 C 0.047 3.953 15 C -0.084 4.084 16 N -0.600 5.600 17 H 0.405 0.595 18 C 0.093 3.907 19 C -0.142 4.142 20 C -0.106 4.106 21 C -0.161 4.161 22 C -0.055 4.055 23 C -0.091 4.091 24 H 0.047 0.953 25 H 0.007 0.993 26 H 0.054 0.946 27 H 0.328 0.672 28 H 0.261 0.739 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.647 2.743 10.988 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.310 5.310 3 C 0.142 3.858 4 H 0.058 0.942 5 C -0.539 4.539 6 H 0.087 0.913 7 C -0.116 4.116 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.222 1.222 11 H -0.224 1.224 12 H -0.151 1.151 13 C -0.144 4.144 14 C -0.059 4.059 15 C -0.142 4.142 16 N -0.204 5.204 17 H 0.241 0.759 18 C -0.015 4.015 19 C -0.163 4.163 20 C -0.125 4.125 21 C -0.180 4.180 22 C -0.074 4.074 23 C -0.096 4.096 24 H 0.066 0.934 25 H 0.026 0.974 26 H 0.072 0.928 27 H 0.148 0.852 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.552 2.726 10.160 13.558 hybrid contribution -0.728 0.577 0.552 1.080 sum -9.280 3.302 10.713 14.553 Atomic orbital electron populations 1.22176 0.91689 0.99643 0.99080 1.61564 1.04253 1.16636 1.48541 1.18154 0.96687 0.85016 0.85983 0.94198 1.20755 0.90084 1.46280 0.96818 0.91272 1.24918 0.95293 0.92931 0.98420 1.69973 1.18812 1.47081 1.17784 0.86883 0.85856 0.76906 0.80008 1.22235 1.22371 1.15088 1.21436 1.02783 0.93739 0.96408 1.20046 1.05671 0.97606 0.82536 1.20357 0.99999 0.96372 0.97439 1.41567 1.57067 1.15236 1.06505 0.75936 1.18225 1.00835 0.88067 0.94338 1.19855 1.05757 0.97932 0.92740 1.20655 0.99888 0.93375 0.98593 1.20547 1.04699 1.00071 0.92727 1.20473 0.95418 0.94920 0.96552 1.19114 1.03337 0.94724 0.92422 0.93386 0.97421 0.92771 0.85243 0.92940 0.90741 0.89878 0.92513 0.87180 0.86569 0.86562 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.95 60.07 0.60 1.05 16 2 N -0.68 -14.88 4.80 -116.49 -0.56 -15.44 16 3 C 0.25 5.80 1.65 -70.01 -0.12 5.69 16 4 H 0.04 0.93 5.29 -51.93 -0.27 0.66 16 5 C -0.50 -14.03 9.25 -34.44 -0.32 -14.35 16 6 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 7 C 0.09 2.54 5.46 -17.82 -0.10 2.44 16 8 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 9 Si 0.88 21.84 26.83 -169.99 -4.56 17.28 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 11 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 12 H -0.23 -5.33 4.34 56.52 0.25 -5.09 16 13 C -0.14 -2.86 4.64 -102.71 -0.48 -3.34 16 14 C 0.05 0.85 7.08 -81.77 -0.58 0.27 16 15 C -0.08 -1.24 10.18 36.00 0.37 -0.87 16 16 N -0.60 -9.52 6.07 -6.95 -0.04 -9.56 16 17 H 0.41 4.89 8.96 -40.82 -0.37 4.53 16 18 C 0.09 1.64 7.28 -83.99 -0.61 1.03 16 19 C -0.14 -2.15 10.08 -39.43 -0.40 -2.55 16 20 C -0.11 -1.54 10.01 -39.54 -0.40 -1.94 16 21 C -0.16 -2.57 9.97 -39.95 -0.40 -2.97 16 22 C -0.06 -1.04 9.24 -39.65 -0.37 -1.41 16 23 C -0.09 -1.83 6.06 -105.14 -0.64 -2.47 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.01 0.13 7.77 -51.93 -0.40 -0.27 16 26 H 0.05 1.01 7.07 -51.93 -0.37 0.64 16 27 H 0.33 6.98 5.87 -39.29 -0.23 6.75 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.27 6.78 -51.92 -0.35 0.92 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.13 2.48 6.62 -52.48 -0.35 2.13 16 LS Contribution 284.33 15.07 4.28 4.28 Total: -1.00 -32.26 284.33 -8.12 -40.38 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.59 Total: 9.44 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -3.43 Total: -19.42 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.17 Total: -51.97 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.56 Total: 17.28 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.26 -8.12 -40.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259468111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.147 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds