Wall clock time and date at job start Mon Mar 30 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00053 * 2 1 4 4 H 1.09002 * 109.46967 * 320.35967 * 3 2 1 5 5 C 1.50705 * 109.46865 * 200.36038 * 3 2 1 6 6 H 1.07994 * 119.99737 * 245.47411 * 5 3 2 7 7 C 1.37874 * 119.99904 * 65.47802 * 5 3 2 8 8 N 1.31518 * 119.99927 * 187.62840 * 7 5 3 9 9 Si 1.86801 * 120.00096 * 7.62731 * 7 5 3 10 10 H 1.48501 * 109.46895 * 91.28493 * 9 7 5 11 11 H 1.48500 * 109.47288 * 211.28346 * 9 7 5 12 12 H 1.48502 * 109.47066 * 331.28448 * 9 7 5 13 13 C 1.50700 * 109.47183 * 80.36210 * 3 2 1 14 14 C 1.34241 * 126.49618 * 226.82967 * 13 3 2 15 15 C 1.50695 * 125.04036 * 0.02647 * 14 13 3 16 16 N 1.36828 * 109.92649 * 180.02562 * 14 13 3 17 17 H 0.97010 * 125.06146 * 180.02562 * 16 14 13 18 18 C 1.37686 * 109.87729 * 0.02562 * 16 14 13 19 19 C 1.39129 * 133.51132 * 179.97438 * 18 16 14 20 20 C 1.37749 * 119.77996 * 180.02562 * 19 18 16 21 21 C 1.38836 * 120.66412 * 0.02562 * 20 19 18 22 22 C 1.36618 * 120.52824 * 359.97438 * 21 20 19 23 23 C 1.39633 * 119.76693 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47341 * 182.79484 * 1 2 3 25 25 H 1.09004 * 109.46945 * 302.79145 * 1 2 3 26 26 H 1.08997 * 109.46789 * 62.78881 * 1 2 3 27 27 H 1.00909 * 110.99568 * 123.94768 * 2 1 3 28 28 H 0.96995 * 119.99625 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47308 * 266.57111 * 15 14 13 30 30 H 1.09010 * 109.46927 * 26.56277 * 15 14 13 31 31 H 1.08996 * 109.47532 * 146.56144 * 15 14 13 32 32 H 1.08004 * 120.10709 * 0.05262 * 19 18 16 33 33 H 1.07994 * 119.66352 * 180.02562 * 20 19 18 34 34 H 1.08000 * 119.72818 * 180.27783 * 21 20 19 35 35 H 1.08006 * 120.11954 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3869 1.9942 -0.6556 5 6 3.4191 1.3629 -0.4944 6 1 4.2235 1.6390 0.1713 7 6 3.6946 1.0028 -1.7964 8 7 4.9412 0.8497 -2.1866 9 14 2.2973 0.7324 -3.0063 10 1 2.0003 2.0049 -3.7119 11 1 2.6925 -0.3018 -3.9959 12 1 1.0882 0.2792 -2.2728 13 6 1.9535 1.9256 1.4008 14 6 1.4947 3.1325 1.7685 15 6 0.9294 4.1663 0.8290 16 7 1.6165 3.2848 3.1228 17 1 1.3515 4.0740 3.6209 18 6 2.1711 2.1513 3.6734 19 6 2.5059 1.7826 4.9725 20 6 3.0620 0.5450 5.2107 21 6 3.2930 -0.3403 4.1665 22 6 2.9719 0.0012 2.8833 23 6 2.4073 1.2506 2.6190 24 1 -0.3634 -1.0264 0.0501 25 1 -0.3633 0.5566 0.8639 26 1 -0.3633 0.4699 -0.9139 27 1 1.8306 -0.5261 0.7815 28 1 5.1349 0.5967 -3.1028 29 1 1.7212 4.8491 0.5211 30 1 0.5149 3.6711 -0.0492 31 1 0.1432 4.7262 1.3354 32 1 2.3300 2.4643 5.7915 33 1 3.3207 0.2607 6.2199 34 1 3.7256 -1.3085 4.3711 35 1 3.1542 -0.6928 2.0760 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259468111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:28 Heat of formation + Delta-G solvation = 39.766907 kcal Electronic energy + Delta-G solvation = -17720.885806 eV Core-core repulsion = 15104.241838 eV Total energy + Delta-G solvation = -2616.643968 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.18816 -38.00570 -37.33109 -34.23116 -32.81812 -31.79135 -30.63258 -29.20003 -27.39595 -25.48761 -23.54702 -23.08168 -21.99470 -20.09122 -18.94568 -18.39265 -17.10709 -16.40263 -16.10971 -15.89808 -15.57382 -14.90934 -14.79612 -14.67519 -14.41761 -14.20574 -13.79513 -13.73674 -13.09372 -13.00202 -12.63819 -12.47541 -12.37009 -12.24717 -12.19136 -11.75179 -11.43273 -11.21751 -10.59019 -10.30229 -8.97224 -8.93588 -8.35029 -8.15499 -6.23405 0.30275 0.79723 1.47519 1.53325 1.77805 1.85682 2.29972 2.59125 3.07574 3.16881 3.89515 3.97595 4.01833 4.25419 4.33024 4.47308 4.50371 4.57660 4.64065 4.73830 4.76726 4.80405 4.96861 5.06497 5.11505 5.16240 5.17948 5.33801 5.64175 5.69665 5.81069 5.92555 6.00665 6.31490 6.34728 6.58043 6.83234 6.90387 6.94295 7.50708 8.98783 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.008780 C = 0.007913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.872153 B = 3188.391801 C = 3537.635185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.695 5.695 3 C 0.262 3.738 4 H 0.042 0.958 5 C -0.495 4.495 6 H 0.015 0.985 7 C 0.028 3.972 8 N -0.953 5.953 9 Si 0.944 3.056 10 H -0.288 1.288 11 H -0.305 1.305 12 H -0.203 1.203 13 C -0.191 4.191 14 C 0.061 3.939 15 C -0.085 4.085 16 N -0.584 5.584 17 H 0.425 0.575 18 C 0.077 3.923 19 C -0.134 4.134 20 C -0.104 4.104 21 C -0.156 4.156 22 C -0.091 4.091 23 C -0.123 4.123 24 H 0.069 0.931 25 H 0.013 0.987 26 H 0.057 0.943 27 H 0.329 0.671 28 H 0.261 0.739 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 3.523 13.041 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.326 5.326 3 C 0.154 3.846 4 H 0.059 0.941 5 C -0.533 4.533 6 H 0.033 0.967 7 C -0.170 4.170 8 N -0.593 5.593 9 Si 0.769 3.231 10 H -0.214 1.214 11 H -0.233 1.233 12 H -0.125 1.125 13 C -0.199 4.199 14 C -0.046 4.046 15 C -0.142 4.142 16 N -0.190 5.190 17 H 0.265 0.735 18 C -0.030 4.030 19 C -0.155 4.155 20 C -0.123 4.123 21 C -0.175 4.175 22 C -0.110 4.110 23 C -0.128 4.128 24 H 0.087 0.913 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.148 0.852 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.165 0.835 33 H 0.175 0.825 34 H 0.156 0.844 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.001 3.529 12.260 16.846 hybrid contribution 0.091 0.345 0.091 0.369 sum -10.911 3.875 12.351 16.929 Atomic orbital electron populations 1.22185 0.89240 1.01188 0.99454 1.61307 1.06547 1.15827 1.48939 1.17736 0.93350 0.85871 0.87638 0.94062 1.20951 0.91694 1.44814 0.95874 0.96683 1.25822 0.97685 0.92991 1.00500 1.70131 1.21300 1.49659 1.18217 0.85849 0.83329 0.76721 0.77240 1.21447 1.23280 1.12495 1.21286 1.06863 0.95992 0.95778 1.20429 1.03454 0.96948 0.83817 1.20468 1.01081 0.95767 0.96917 1.41477 1.56125 1.15563 1.05812 0.73511 1.18532 1.01476 0.88114 0.94880 1.20333 1.03993 0.98608 0.92545 1.21132 0.98550 0.92680 0.99908 1.20885 1.03303 1.01349 0.91941 1.20481 0.98066 0.95014 0.97466 1.19359 1.04455 0.95817 0.93153 0.91264 0.96857 0.92386 0.85180 0.93073 0.90534 0.90535 0.88587 0.83485 0.82528 0.84400 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 9.95 127.69 1.27 2.30 16 2 N -0.69 -30.56 4.80 -522.46 -2.51 -33.07 16 3 C 0.26 12.43 1.65 43.42 0.07 12.50 16 4 H 0.04 1.92 5.29 -2.39 -0.01 1.91 16 5 C -0.49 -29.13 9.25 25.60 0.24 -28.89 16 6 H 0.01 1.01 7.99 -2.91 -0.02 0.99 16 7 C 0.03 1.67 5.46 84.65 0.46 2.13 16 8 N -0.95 -61.75 13.96 21.45 0.30 -61.45 16 9 Si 0.94 46.11 26.83 68.60 1.84 47.95 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 11 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 12 H -0.20 -9.00 4.34 99.48 0.43 -8.57 16 13 C -0.19 -8.15 4.64 -18.63 -0.09 -8.24 16 14 C 0.06 2.14 7.08 40.87 0.29 2.43 16 15 C -0.09 -2.32 10.18 71.23 0.73 -1.59 16 16 N -0.58 -17.22 6.07 -175.92 -1.07 -18.29 16 17 H 0.43 8.82 8.96 -92.70 -0.83 7.99 16 18 C 0.08 2.61 7.28 39.03 0.28 2.89 16 19 C -0.13 -3.61 10.08 22.37 0.23 -3.38 16 20 C -0.10 -2.68 10.01 22.30 0.22 -2.45 16 21 C -0.16 -4.79 9.97 22.03 0.22 -4.57 16 22 C -0.09 -3.57 9.24 22.23 0.21 -3.36 16 23 C -0.12 -5.01 6.06 -20.20 -0.12 -5.14 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.01 0.45 7.77 -2.38 -0.02 0.43 16 26 H 0.06 2.01 7.07 -2.39 -0.02 1.99 16 27 H 0.33 14.45 5.87 -89.69 -0.53 13.92 16 28 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 2.20 6.78 -2.38 -0.02 2.19 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.10 4.37 6.62 -2.91 -0.02 4.35 16 Total: -1.00 -74.32 284.33 2.05 -72.27 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: -0.52 Total: 27.96 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 4.01 Total: -35.39 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -3.28 Total: -112.80 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.84 Total: 47.95 kcal Total: -74.32 2.05 -72.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259468111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.040 kcal (2) G-P(sol) polarization free energy of solvation -74.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds