Wall clock time and date at job start Mon Mar 30 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46895 * 111.00016 * 2 1 4 4 H 1.08995 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47312 * 299.95280 * 3 2 1 6 6 H 1.08006 * 119.99756 * 114.59504 * 5 3 2 7 7 C 1.37872 * 119.99985 * 294.60158 * 5 3 2 8 8 N 1.31520 * 120.00126 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00293 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47211 * 89.99529 * 9 7 5 11 11 H 1.48500 * 109.47427 * 210.00121 * 9 7 5 12 12 H 1.48507 * 109.46870 * 330.00462 * 9 7 5 13 13 C 1.50703 * 109.47145 * 59.95212 * 3 2 1 14 14 C 1.34238 * 126.50528 * 214.38456 * 13 3 2 15 15 C 1.50699 * 125.03085 * 359.97438 * 14 13 3 16 16 N 1.36828 * 109.92979 * 179.83215 * 14 13 3 17 17 H 0.97007 * 125.06070 * 180.18524 * 16 14 13 18 18 C 1.37683 * 109.87631 * 0.44704 * 16 14 13 19 19 C 1.39124 * 133.50853 * 179.71945 * 18 16 14 20 20 C 1.37748 * 119.77858 * 180.02562 * 19 18 16 21 21 C 1.38835 * 120.66640 * 359.97438 * 20 19 18 22 22 C 1.36626 * 120.52623 * 0.02562 * 21 20 19 23 23 C 1.39626 * 119.76805 * 359.97438 * 22 21 20 24 24 H 1.08991 * 109.46900 * 295.48157 * 1 2 3 25 25 H 1.09002 * 109.46892 * 175.48102 * 1 2 3 26 26 H 1.08996 * 109.46920 * 55.48042 * 1 2 3 27 27 H 1.00893 * 110.99972 * 123.95756 * 2 1 3 28 28 H 0.96999 * 120.00393 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47646 * 89.28711 * 15 14 13 30 30 H 1.09004 * 109.47064 * 209.28791 * 15 14 13 31 31 H 1.09000 * 109.47625 * 329.28239 * 15 14 13 32 32 H 1.07996 * 120.11191 * 0.03696 * 19 18 16 33 33 H 1.07998 * 119.66987 * 180.02562 * 20 19 18 34 34 H 1.08001 * 119.73597 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.11374 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 3.0851 1.3424 0.0005 5 6 1.5133 2.0946 -1.2310 6 1 0.8445 2.9373 -1.1351 7 6 1.9256 1.6805 -2.4798 8 7 1.5044 2.3114 -3.5542 9 14 3.0826 0.2234 -2.6458 10 1 2.2902 -1.0267 -2.7661 11 1 3.9239 0.3948 -3.8574 12 1 3.9536 0.1437 -1.4455 13 6 1.5113 2.0953 1.2299 14 6 1.2020 3.3985 1.3195 15 6 1.2859 4.3875 0.1856 16 7 0.7962 3.6950 2.5922 17 1 0.5192 4.5728 2.8985 18 6 0.8451 2.5633 3.3748 19 6 0.5526 2.3094 4.7110 20 6 0.7065 1.0368 5.2152 21 6 1.1506 0.0022 4.4028 22 6 1.4435 0.2292 3.0878 23 6 1.2948 1.5116 2.5558 24 1 -0.3633 0.4421 0.9276 25 1 -0.3633 -1.0245 -0.0810 26 1 -0.3633 0.5823 -0.8467 27 1 1.8306 -0.5261 0.7813 28 1 1.7948 2.0203 -4.4327 29 1 0.3385 4.4038 -0.3533 30 1 1.4942 5.3804 0.5842 31 1 2.0856 4.0938 -0.4943 32 1 0.2060 3.1074 5.3509 33 1 0.4785 0.8416 6.2526 34 1 1.2654 -0.9900 4.8137 35 1 1.7881 -0.5805 2.4618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259468119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:30 Heat of formation + Delta-G solvation = 69.975273 kcal Electronic energy + Delta-G solvation = -17879.115085 eV Core-core repulsion = 15263.781051 eV Total energy + Delta-G solvation = -2615.334034 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.92117 -36.79945 -35.80372 -32.16424 -31.33573 -30.47037 -29.19481 -27.10503 -26.07131 -24.17162 -21.90700 -21.53305 -20.65701 -18.47533 -17.06029 -16.73876 -15.70706 -14.93790 -14.67467 -14.41438 -14.11883 -13.57639 -13.40806 -12.91040 -12.73643 -12.48891 -12.13261 -11.83580 -11.71916 -11.26488 -11.06050 -10.98120 -10.83504 -10.62849 -10.46685 -9.87590 -9.78018 -9.10493 -8.73055 -8.47659 -7.71375 -7.34882 -6.91380 -5.96959 -4.02609 1.51552 1.99063 3.31812 3.57294 3.57948 3.63154 3.74462 4.29294 4.67810 5.05696 5.21180 5.29726 5.33098 5.53200 5.64723 5.79878 5.85025 5.99473 6.11765 6.26631 6.38220 6.43290 6.50093 6.50768 6.66143 6.77788 6.94086 6.96548 7.00561 7.24875 7.27750 7.47005 7.56921 7.78832 8.03435 8.16205 8.48101 8.75070 9.03167 9.67803 11.10772 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029519 B = 0.008753 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.320348 B = 3198.154177 C = 3847.347050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.684 5.684 3 C 0.241 3.759 4 H 0.049 0.951 5 C -0.520 4.520 6 H 0.093 0.907 7 C 0.083 3.917 8 N -0.901 5.901 9 Si 0.916 3.084 10 H -0.278 1.278 11 H -0.315 1.315 12 H -0.272 1.272 13 C -0.160 4.160 14 C 0.087 3.913 15 C -0.084 4.084 16 N -0.601 5.601 17 H 0.406 0.594 18 C 0.090 3.910 19 C -0.134 4.134 20 C -0.112 4.112 21 C -0.157 4.157 22 C -0.072 4.072 23 C -0.099 4.099 24 H 0.011 0.989 25 H 0.036 0.964 26 H 0.078 0.922 27 H 0.306 0.694 28 H 0.262 0.738 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 0.345 13.541 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.315 5.315 3 C 0.133 3.867 4 H 0.067 0.933 5 C -0.558 4.558 6 H 0.111 0.889 7 C -0.120 4.120 8 N -0.539 5.539 9 Si 0.747 3.253 10 H -0.204 1.204 11 H -0.244 1.244 12 H -0.197 1.197 13 C -0.168 4.168 14 C -0.019 4.019 15 C -0.141 4.141 16 N -0.205 5.205 17 H 0.242 0.758 18 C -0.017 4.017 19 C -0.155 4.155 20 C -0.132 4.132 21 C -0.177 4.177 22 C -0.091 4.091 23 C -0.105 4.105 24 H 0.029 0.971 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.069 0.392 12.638 12.689 hybrid contribution 0.071 -0.126 1.062 1.072 sum -0.999 0.266 13.700 13.739 Atomic orbital electron populations 1.21910 0.88946 0.99011 1.00684 1.61116 1.07894 1.16264 1.46183 1.18282 0.95007 0.83873 0.89570 0.93329 1.21318 1.30534 1.15614 0.88343 0.88947 1.24959 0.95558 0.95987 0.95503 1.69934 1.44887 1.40973 0.98095 0.86194 0.80278 0.83430 0.75392 1.20418 1.24361 1.19688 1.21459 1.08011 0.92910 0.94421 1.20299 1.00948 0.96147 0.84471 1.20868 1.05409 0.93376 0.94479 1.41798 1.60280 1.09312 1.09083 0.75841 1.18206 1.03538 0.87261 0.92743 1.19904 1.06266 0.97502 0.91873 1.20624 1.01224 0.92215 0.99088 1.20502 1.04305 0.98783 0.94066 1.20378 0.98736 0.95081 0.94910 1.19303 1.04142 0.93055 0.93967 0.97072 0.94562 0.90337 0.87619 0.92852 0.90705 0.94401 0.86408 0.87084 0.86570 0.86724 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 10.05 60.07 0.60 1.54 16 2 N -0.68 -15.04 4.71 -116.50 -0.55 -15.58 16 3 C 0.24 5.57 2.38 -70.02 -0.17 5.41 16 4 H 0.05 1.20 6.82 -51.93 -0.35 0.84 16 5 C -0.52 -13.47 5.66 -34.44 -0.19 -13.66 16 6 H 0.09 2.46 4.44 -52.48 -0.23 2.23 16 7 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 8 N -0.90 -26.35 13.96 55.43 0.77 -25.57 16 9 Si 0.92 23.07 26.35 -169.99 -4.48 18.59 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 11 H -0.31 -8.01 7.11 56.52 0.40 -7.61 16 12 H -0.27 -6.67 6.39 56.52 0.36 -6.31 16 13 C -0.16 -3.36 4.75 -102.71 -0.49 -3.85 16 14 C 0.09 1.67 6.96 -81.77 -0.57 1.10 16 15 C -0.08 -1.54 8.36 36.00 0.30 -1.24 16 16 N -0.60 -9.78 6.07 -6.95 -0.04 -9.83 16 17 H 0.41 5.17 8.96 -40.82 -0.37 4.81 16 18 C 0.09 1.55 7.28 -83.99 -0.61 0.94 16 19 C -0.13 -1.95 10.08 -39.43 -0.40 -2.35 16 20 C -0.11 -1.53 10.01 -39.54 -0.40 -1.92 16 21 C -0.16 -2.27 9.97 -39.94 -0.40 -2.67 16 22 C -0.07 -1.22 9.39 -39.65 -0.37 -1.60 16 23 C -0.10 -1.89 5.11 -105.14 -0.54 -2.43 16 24 H 0.01 0.23 6.32 -51.93 -0.33 -0.10 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 1.87 6.93 -51.93 -0.36 1.51 16 27 H 0.31 6.04 5.88 -39.30 -0.23 5.81 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.07 1.43 7.20 -51.93 -0.37 1.05 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.12 2.46 6.17 -51.93 -0.32 2.14 16 32 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.12 1.91 5.76 -52.49 -0.30 1.60 16 LS Contribution 274.41 15.07 4.14 4.14 Total: -1.00 -29.85 274.41 -7.64 -37.49 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -4.16 Total: 9.28 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -3.32 Total: -18.52 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.18 Total: -50.98 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.48 Total: 18.59 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.85 -7.64 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259468119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.466 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds