Wall clock time and date at job start Mon Mar 30 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46895 * 111.00016 * 2 1 4 4 H 1.08995 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47312 * 299.95280 * 3 2 1 6 6 H 1.08006 * 119.99756 * 114.59504 * 5 3 2 7 7 C 1.37872 * 119.99985 * 294.60158 * 5 3 2 8 8 N 1.31520 * 120.00126 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00293 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47211 * 89.99529 * 9 7 5 11 11 H 1.48500 * 109.47427 * 210.00121 * 9 7 5 12 12 H 1.48507 * 109.46870 * 330.00462 * 9 7 5 13 13 C 1.50703 * 109.47145 * 59.95212 * 3 2 1 14 14 C 1.34238 * 126.50528 * 214.38456 * 13 3 2 15 15 C 1.50699 * 125.03085 * 359.97438 * 14 13 3 16 16 N 1.36828 * 109.92979 * 179.83215 * 14 13 3 17 17 H 0.97007 * 125.06070 * 180.18524 * 16 14 13 18 18 C 1.37683 * 109.87631 * 0.44704 * 16 14 13 19 19 C 1.39124 * 133.50853 * 179.71945 * 18 16 14 20 20 C 1.37748 * 119.77858 * 180.02562 * 19 18 16 21 21 C 1.38835 * 120.66640 * 359.97438 * 20 19 18 22 22 C 1.36626 * 120.52623 * 0.02562 * 21 20 19 23 23 C 1.39626 * 119.76805 * 359.97438 * 22 21 20 24 24 H 1.08991 * 109.46900 * 295.48157 * 1 2 3 25 25 H 1.09002 * 109.46892 * 175.48102 * 1 2 3 26 26 H 1.08996 * 109.46920 * 55.48042 * 1 2 3 27 27 H 1.00893 * 110.99972 * 123.95756 * 2 1 3 28 28 H 0.96999 * 120.00393 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47646 * 89.28711 * 15 14 13 30 30 H 1.09004 * 109.47064 * 209.28791 * 15 14 13 31 31 H 1.09000 * 109.47625 * 329.28239 * 15 14 13 32 32 H 1.07996 * 120.11191 * 0.03696 * 19 18 16 33 33 H 1.07998 * 119.66987 * 180.02562 * 20 19 18 34 34 H 1.08001 * 119.73597 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.11374 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 3.0851 1.3424 0.0005 5 6 1.5133 2.0946 -1.2310 6 1 0.8445 2.9373 -1.1351 7 6 1.9256 1.6805 -2.4798 8 7 1.5044 2.3114 -3.5542 9 14 3.0826 0.2234 -2.6458 10 1 2.2902 -1.0267 -2.7661 11 1 3.9239 0.3948 -3.8574 12 1 3.9536 0.1437 -1.4455 13 6 1.5113 2.0953 1.2299 14 6 1.2020 3.3985 1.3195 15 6 1.2859 4.3875 0.1856 16 7 0.7962 3.6950 2.5922 17 1 0.5192 4.5728 2.8985 18 6 0.8451 2.5633 3.3748 19 6 0.5526 2.3094 4.7110 20 6 0.7065 1.0368 5.2152 21 6 1.1506 0.0022 4.4028 22 6 1.4435 0.2292 3.0878 23 6 1.2948 1.5116 2.5558 24 1 -0.3633 0.4421 0.9276 25 1 -0.3633 -1.0245 -0.0810 26 1 -0.3633 0.5823 -0.8467 27 1 1.8306 -0.5261 0.7813 28 1 1.7948 2.0203 -4.4327 29 1 0.3385 4.4038 -0.3533 30 1 1.4942 5.3804 0.5842 31 1 2.0856 4.0938 -0.4943 32 1 0.2060 3.1074 5.3509 33 1 0.4785 0.8416 6.2526 34 1 1.2654 -0.9900 4.8137 35 1 1.7881 -0.5805 2.4618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259468119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:30 Heat of formation + Delta-G solvation = 50.508534 kcal Electronic energy + Delta-G solvation = -17879.959226 eV Core-core repulsion = 15263.781051 eV Total energy + Delta-G solvation = -2616.178176 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.25023 -38.10081 -37.45938 -34.18727 -32.77374 -31.83841 -30.57179 -28.76176 -27.55104 -26.00877 -23.33416 -22.98527 -22.00980 -19.99400 -18.74549 -18.32106 -17.10766 -16.57350 -16.24861 -15.87096 -15.70826 -14.93050 -14.68822 -14.64848 -14.45805 -14.14246 -13.69989 -13.38443 -13.12987 -13.04466 -12.60822 -12.44568 -12.31389 -12.24669 -12.13977 -11.75611 -11.46525 -10.86834 -10.61440 -10.25395 -9.09469 -8.95254 -8.33010 -8.10939 -6.15811 0.29457 0.79648 1.51552 1.57616 1.69159 1.87153 2.31015 2.59227 3.06318 3.21813 3.82700 3.94435 4.03833 4.24853 4.34717 4.52370 4.59658 4.62886 4.72272 4.78810 4.86776 4.90620 5.10731 5.13656 5.15795 5.27177 5.40543 5.44424 5.59039 5.72645 5.79128 5.94125 6.06696 6.22270 6.32506 6.63684 6.84781 6.85268 7.05443 7.55645 8.99260 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029519 B = 0.008753 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.320348 B = 3198.154177 C = 3847.347050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.691 5.691 3 C 0.247 3.753 4 H 0.030 0.970 5 C -0.502 4.502 6 H 0.079 0.921 7 C 0.035 3.965 8 N -0.944 5.944 9 Si 0.963 3.037 10 H -0.283 1.283 11 H -0.319 1.319 12 H -0.263 1.263 13 C -0.197 4.197 14 C 0.083 3.917 15 C -0.075 4.075 16 N -0.588 5.588 17 H 0.423 0.577 18 C 0.077 3.923 19 C -0.134 4.134 20 C -0.105 4.105 21 C -0.150 4.150 22 C -0.095 4.095 23 C -0.126 4.126 24 H 0.013 0.987 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.322 0.678 28 H 0.260 0.740 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.155 0.845 34 H 0.144 0.856 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -0.279 17.036 17.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.323 5.323 3 C 0.138 3.862 4 H 0.048 0.952 5 C -0.540 4.540 6 H 0.096 0.904 7 C -0.164 4.164 8 N -0.584 5.584 9 Si 0.794 3.206 10 H -0.209 1.209 11 H -0.249 1.249 12 H -0.188 1.188 13 C -0.205 4.205 14 C -0.025 4.025 15 C -0.132 4.132 16 N -0.193 5.193 17 H 0.262 0.738 18 C -0.030 4.030 19 C -0.154 4.154 20 C -0.124 4.124 21 C -0.169 4.169 22 C -0.114 4.114 23 C -0.131 4.131 24 H 0.032 0.968 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.141 0.859 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.160 0.840 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.418 -0.226 16.178 16.242 hybrid contribution 0.134 0.072 0.165 0.224 sum -1.284 -0.155 16.343 16.395 Atomic orbital electron populations 1.21745 0.88389 0.99789 0.99265 1.60922 1.08390 1.15745 1.47244 1.17952 0.93858 0.84637 0.89726 0.95190 1.21569 1.28513 1.14678 0.89221 0.90366 1.25547 0.97198 0.98011 0.95629 1.70033 1.47137 1.42848 0.98424 0.85433 0.78952 0.80992 0.75254 1.20894 1.24870 1.18803 1.21249 1.10477 0.93987 0.94779 1.20276 1.00772 0.95754 0.85683 1.20615 1.03355 0.95263 0.93930 1.41629 1.59642 1.10190 1.07884 0.73825 1.18559 1.03887 0.86795 0.93784 1.20336 1.05227 0.98991 0.90867 1.21138 0.99127 0.91353 1.00753 1.20903 1.02387 1.00566 0.93006 1.20515 1.00160 0.94390 0.96291 1.19413 1.05756 0.94653 0.93295 0.96805 0.92203 0.93652 0.85851 0.93149 0.92090 0.90790 0.89643 0.83979 0.82694 0.83843 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.43 10.05 127.69 1.28 3.71 16 2 N -0.69 -30.29 4.71 -522.48 -2.46 -32.75 16 3 C 0.25 11.64 2.38 43.43 0.10 11.74 16 4 H 0.03 1.52 6.82 -2.39 -0.02 1.50 16 5 C -0.50 -26.88 5.66 25.60 0.14 -26.73 16 6 H 0.08 4.36 4.44 -2.91 -0.01 4.35 16 7 C 0.03 1.98 5.47 84.65 0.46 2.44 16 8 N -0.94 -57.29 13.96 21.45 0.30 -56.99 16 9 Si 0.96 48.59 26.35 68.60 1.81 50.40 16 10 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 11 H -0.32 -16.21 7.11 99.48 0.71 -15.50 16 12 H -0.26 -12.76 6.39 99.48 0.64 -12.13 16 13 C -0.20 -8.28 4.75 -18.63 -0.09 -8.37 16 14 C 0.08 3.16 6.96 40.87 0.28 3.45 16 15 C -0.07 -2.76 8.36 71.24 0.60 -2.16 16 16 N -0.59 -18.10 6.07 -175.91 -1.07 -19.17 16 17 H 0.42 9.74 8.96 -92.70 -0.83 8.91 16 18 C 0.08 2.46 7.28 39.03 0.28 2.75 16 19 C -0.13 -3.30 10.08 22.37 0.23 -3.08 16 20 C -0.10 -2.32 10.01 22.30 0.22 -2.10 16 21 C -0.15 -3.73 9.97 22.04 0.22 -3.51 16 22 C -0.09 -3.01 9.39 22.23 0.21 -2.80 16 23 C -0.13 -4.63 5.11 -20.20 -0.10 -4.74 16 24 H 0.01 0.56 6.32 -2.39 -0.02 0.55 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.04 2.19 6.93 -2.39 -0.02 2.18 16 27 H 0.32 12.49 5.88 -89.70 -0.53 11.97 16 28 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.06 2.41 7.20 -2.38 -0.02 2.39 16 30 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.08 3.72 6.17 -2.39 -0.01 3.71 16 32 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 35 H 0.12 3.58 5.76 -2.91 -0.02 3.56 16 Total: -1.00 -66.01 274.41 2.12 -63.88 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.30 Total: 24.02 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 3.84 Total: -29.39 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -3.23 Total: -108.91 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.81 Total: 50.40 kcal Total: -66.01 2.12 -63.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259468119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.391 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds