Wall clock time and date at job start Mon Mar 30 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.36828 * 125.03474 * 2 1 4 4 H 0.97000 * 125.06510 * 359.94788 * 3 2 1 5 5 C 1.37692 * 109.87456 * 179.97438 * 3 2 1 6 6 C 1.39119 * 133.50647 * 180.02562 * 5 3 2 7 7 C 1.37759 * 119.77553 * 179.26337 * 6 5 3 8 8 C 1.38831 * 120.66685 * 0.63866 * 7 6 5 9 9 C 1.36628 * 120.52615 * 359.57705 * 8 7 6 10 10 C 1.39628 * 119.76392 * 0.02562 * 9 8 7 11 11 C 1.34238 * 125.03340 * 179.97438 * 2 1 3 12 12 C 1.50701 * 126.50303 * 0.02562 * 11 2 1 13 13 H 1.09000 * 109.46890 * 359.44198 * 12 11 2 14 14 C 1.50707 * 109.46937 * 119.44183 * 12 11 2 15 15 H 1.07999 * 119.99965 * 0.02562 * 14 12 11 16 16 C 1.37882 * 119.99794 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00056 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99812 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47138 * 89.99959 * 18 16 14 20 20 H 1.48503 * 109.46733 * 209.99625 * 18 16 14 21 21 H 1.48496 * 109.47361 * 329.99475 * 18 16 14 22 22 C 1.52995 * 109.47039 * 239.44038 * 12 11 2 23 23 N 1.46895 * 109.47130 * 64.37025 * 22 12 11 24 24 H 1.08998 * 109.47284 * 266.52878 * 1 2 3 25 25 H 1.09007 * 109.47012 * 26.52931 * 1 2 3 26 26 H 1.09004 * 109.47219 * 146.52560 * 1 2 3 27 27 H 1.07996 * 120.11457 * 359.97438 * 6 5 3 28 28 H 1.07997 * 119.66668 * 180.23647 * 7 6 5 29 29 H 1.07998 * 119.73962 * 179.60578 * 8 7 6 30 30 H 1.08000 * 120.11735 * 180.02562 * 9 8 7 31 31 H 0.96996 * 120.00172 * 180.02562 * 17 16 14 32 32 H 1.09003 * 109.47234 * 304.36463 * 22 12 11 33 33 H 1.09000 * 109.46809 * 184.37033 * 22 12 11 34 34 H 1.00897 * 111.00293 * 56.04584 * 23 22 12 35 35 H 1.00904 * 111.00146 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9623 2.0324 -0.0007 5 6 3.6215 0.7603 0.0006 6 6 4.8098 1.4837 0.0013 7 6 6.0158 0.8182 0.0171 8 6 6.0589 -0.5694 0.0191 9 6 4.9041 -1.2996 0.0141 10 6 3.6705 -0.6456 0.0063 11 6 2.2776 -1.0992 0.0005 12 6 1.8003 -2.5286 0.0006 13 1 0.7105 -2.5477 0.0102 14 6 2.3041 -3.2265 -1.2365 15 1 2.9097 -2.6888 -1.9510 16 6 1.9919 -4.5514 -1.4560 17 7 1.2549 -5.2063 -0.5856 18 14 2.6158 -5.4162 -2.9897 19 1 3.9375 -6.0319 -2.7078 20 1 1.6522 -6.4735 -3.3883 21 1 2.7537 -4.4310 -4.0921 22 6 2.3340 -3.2443 1.2430 23 7 1.7598 -2.6292 2.4470 24 1 -0.3634 -0.0622 1.0257 25 1 -0.3633 0.9195 -0.4590 26 1 -0.3634 -0.8572 -0.5668 27 1 4.7868 2.5634 0.0010 28 1 6.9372 1.3816 0.0215 29 1 7.0128 -1.0758 0.0252 30 1 4.9453 -2.3788 0.0161 31 1 1.0355 -6.1384 -0.7399 32 1 3.4202 -3.1581 1.2736 33 1 2.0541 -4.2971 1.2041 34 1 0.7514 -2.6388 2.4123 35 1 2.0968 -3.0849 3.2818 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259532325.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:32 Heat of formation + Delta-G solvation = 45.221103 kcal Electronic energy + Delta-G solvation = -17643.523123 eV Core-core repulsion = 15027.115668 eV Total energy + Delta-G solvation = -2616.407456 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55352 -36.43984 -35.13722 -32.06723 -31.41727 -30.31563 -29.13751 -27.50372 -25.76583 -23.74754 -21.54712 -21.28506 -20.32074 -18.12603 -16.89977 -16.36894 -15.44030 -14.65550 -14.47887 -14.29154 -14.04024 -13.53339 -13.20482 -13.18532 -12.45555 -12.35602 -11.98329 -11.85514 -11.56843 -11.17658 -10.94763 -10.79627 -10.79227 -10.63264 -10.38179 -9.77781 -9.57880 -9.17391 -8.63882 -8.39495 -7.47115 -7.41379 -6.64194 -5.97830 -4.04340 1.84238 2.31366 3.31213 3.38080 3.42509 3.62317 3.80144 4.45207 4.67736 5.28667 5.37614 5.50487 5.59909 5.70425 5.80690 5.85370 6.11883 6.12268 6.14700 6.31420 6.48007 6.62531 6.67024 6.86566 6.92034 7.11003 7.18810 7.32597 7.51362 7.59967 7.73365 7.83739 8.01110 8.08430 8.20640 8.32042 8.46014 8.58267 9.01104 9.59828 11.04909 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.009076 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.502608 B = 3084.317605 C = 3620.994304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.029 3.971 3 N -0.602 5.602 4 H 0.402 0.598 5 C 0.091 3.909 6 C -0.146 4.146 7 C -0.110 4.110 8 C -0.171 4.171 9 C -0.048 4.048 10 C -0.084 4.084 11 C -0.076 4.076 12 C 0.114 3.886 13 H 0.032 0.968 14 C -0.498 4.498 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.274 1.274 22 C 0.066 3.934 23 N -0.854 5.854 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.259 0.741 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.326 0.674 35 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 9.331 2.711 9.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 N -0.206 5.206 4 H 0.237 0.763 5 C -0.016 4.016 6 C -0.167 4.167 7 C -0.129 4.129 8 C -0.190 4.190 9 C -0.066 4.066 10 C -0.089 4.089 11 C -0.082 4.082 12 C 0.095 3.905 13 H 0.050 0.950 14 C -0.537 4.537 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.064 4.064 23 N -0.381 5.381 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.142 0.858 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.346 9.896 2.471 10.466 hybrid contribution -0.144 -0.969 -0.666 1.185 sum 2.202 8.927 1.806 9.370 Atomic orbital electron populations 1.20283 0.88780 1.02335 1.02238 1.19919 0.92835 0.85380 1.09378 1.41499 1.03832 1.07456 1.67803 0.76324 1.18230 0.84481 0.94623 1.04316 1.19801 0.90071 0.97961 1.08845 1.20580 0.96044 0.94404 1.01853 1.20496 0.97706 0.93798 1.07031 1.20454 0.90532 0.99996 0.95651 1.19142 0.93988 0.91076 1.04730 1.20659 0.89329 0.95758 1.02413 1.17268 0.95683 0.84677 0.92905 0.95000 1.21150 1.31971 0.95306 1.05267 0.92404 1.24961 0.95106 0.97471 0.96478 1.69867 1.38036 1.10189 1.35298 0.86620 0.78599 0.79327 0.83687 1.20685 1.21364 1.19888 1.22014 0.97251 0.98895 0.88273 1.59018 1.11793 1.62365 1.04896 0.91504 0.93035 0.89743 0.87511 0.86961 0.87064 0.85829 0.93089 0.93840 0.91879 0.86383 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 9.95 36.00 0.36 -0.90 16 2 C 0.03 0.55 7.08 -81.77 -0.58 -0.03 16 3 N -0.60 -10.41 6.07 -6.95 -0.04 -10.45 16 4 H 0.40 5.42 8.96 -40.82 -0.37 5.05 16 5 C 0.09 1.74 7.28 -83.99 -0.61 1.13 16 6 C -0.15 -2.41 10.08 -39.43 -0.40 -2.81 16 7 C -0.11 -1.75 10.01 -39.54 -0.40 -2.14 16 8 C -0.17 -2.97 9.97 -39.94 -0.40 -3.37 16 9 C -0.05 -0.98 9.50 -39.64 -0.38 -1.36 16 10 C -0.08 -1.82 6.07 -105.13 -0.64 -2.46 16 11 C -0.08 -1.69 4.59 -102.71 -0.47 -2.16 16 12 C 0.11 2.78 2.23 -92.92 -0.21 2.58 16 13 H 0.03 0.83 6.80 -51.93 -0.35 0.47 16 14 C -0.50 -13.39 8.48 -34.44 -0.29 -13.68 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.62 5.29 -17.82 -0.09 1.53 16 17 N -0.89 -24.60 11.30 55.43 0.63 -23.97 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.07 1.54 5.96 -3.83 -0.02 1.51 16 23 N -0.85 -17.09 9.32 -10.37 -0.10 -17.19 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.46 7.22 -51.93 -0.37 1.09 16 27 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.12 2.63 7.24 -52.49 -0.38 2.25 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 32 H 0.04 1.05 6.57 -51.93 -0.34 0.71 16 33 H 0.06 1.64 5.97 -51.93 -0.31 1.33 16 34 H 0.33 6.25 8.99 -39.29 -0.35 5.89 16 35 H 0.32 5.65 9.08 -39.29 -0.36 5.29 16 LS Contribution 291.37 15.07 4.39 4.39 Total: -1.00 -29.36 291.37 -8.76 -38.12 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -4.49 Total: 15.15 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -4.13 Total: -22.16 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.49 Total: -51.61 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.36 -8.76 -38.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259532325.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.338 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds