Wall clock time and date at job start Mon Mar 30 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.36828 * 125.03474 * 2 1 4 4 H 0.97000 * 125.06510 * 359.94788 * 3 2 1 5 5 C 1.37692 * 109.87456 * 179.97438 * 3 2 1 6 6 C 1.39119 * 133.50647 * 180.02562 * 5 3 2 7 7 C 1.37759 * 119.77553 * 179.26337 * 6 5 3 8 8 C 1.38831 * 120.66685 * 0.63866 * 7 6 5 9 9 C 1.36628 * 120.52615 * 359.57705 * 8 7 6 10 10 C 1.39628 * 119.76392 * 0.02562 * 9 8 7 11 11 C 1.34238 * 125.03340 * 179.97438 * 2 1 3 12 12 C 1.50701 * 126.50303 * 0.02562 * 11 2 1 13 13 H 1.09000 * 109.46890 * 359.44198 * 12 11 2 14 14 C 1.50707 * 109.46937 * 119.44183 * 12 11 2 15 15 H 1.07999 * 119.99965 * 0.02562 * 14 12 11 16 16 C 1.37882 * 119.99794 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00056 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99812 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47138 * 89.99959 * 18 16 14 20 20 H 1.48503 * 109.46733 * 209.99625 * 18 16 14 21 21 H 1.48496 * 109.47361 * 329.99475 * 18 16 14 22 22 C 1.52995 * 109.47039 * 239.44038 * 12 11 2 23 23 N 1.46895 * 109.47130 * 64.37025 * 22 12 11 24 24 H 1.08998 * 109.47284 * 266.52878 * 1 2 3 25 25 H 1.09007 * 109.47012 * 26.52931 * 1 2 3 26 26 H 1.09004 * 109.47219 * 146.52560 * 1 2 3 27 27 H 1.07996 * 120.11457 * 359.97438 * 6 5 3 28 28 H 1.07997 * 119.66668 * 180.23647 * 7 6 5 29 29 H 1.07998 * 119.73962 * 179.60578 * 8 7 6 30 30 H 1.08000 * 120.11735 * 180.02562 * 9 8 7 31 31 H 0.96996 * 120.00172 * 180.02562 * 17 16 14 32 32 H 1.09003 * 109.47234 * 304.36463 * 22 12 11 33 33 H 1.09000 * 109.46809 * 184.37033 * 22 12 11 34 34 H 1.00897 * 111.00293 * 56.04584 * 23 22 12 35 35 H 1.00904 * 111.00146 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9623 2.0324 -0.0007 5 6 3.6215 0.7603 0.0006 6 6 4.8098 1.4837 0.0013 7 6 6.0158 0.8182 0.0171 8 6 6.0589 -0.5694 0.0191 9 6 4.9041 -1.2996 0.0141 10 6 3.6705 -0.6456 0.0063 11 6 2.2776 -1.0992 0.0005 12 6 1.8003 -2.5286 0.0006 13 1 0.7105 -2.5477 0.0102 14 6 2.3041 -3.2265 -1.2365 15 1 2.9097 -2.6888 -1.9510 16 6 1.9919 -4.5514 -1.4560 17 7 1.2549 -5.2063 -0.5856 18 14 2.6158 -5.4162 -2.9897 19 1 3.9375 -6.0319 -2.7078 20 1 1.6522 -6.4735 -3.3883 21 1 2.7537 -4.4310 -4.0921 22 6 2.3340 -3.2443 1.2430 23 7 1.7598 -2.6292 2.4470 24 1 -0.3634 -0.0622 1.0257 25 1 -0.3633 0.9195 -0.4590 26 1 -0.3634 -0.8572 -0.5668 27 1 4.7868 2.5634 0.0010 28 1 6.9372 1.3816 0.0215 29 1 7.0128 -1.0758 0.0252 30 1 4.9453 -2.3788 0.0161 31 1 1.0355 -6.1384 -0.7399 32 1 3.4202 -3.1581 1.2736 33 1 2.0541 -4.2971 1.2041 34 1 0.7514 -2.6388 2.4123 35 1 2.0968 -3.0849 3.2818 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259532325.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:31 Heat of formation + Delta-G solvation = 26.303128 kcal Electronic energy + Delta-G solvation = -17644.343468 eV Core-core repulsion = 15027.115668 eV Total energy + Delta-G solvation = -2617.227801 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.99247 -37.84201 -36.94423 -34.05058 -32.94366 -31.67486 -30.69099 -29.14068 -27.24964 -25.71427 -22.96662 -22.93995 -21.82127 -19.72178 -18.57812 -18.11183 -16.88522 -16.59350 -16.09927 -15.77998 -15.51641 -15.15124 -14.88782 -14.58301 -14.01070 -13.87098 -13.64317 -13.30790 -13.10068 -12.95337 -12.85997 -12.51583 -12.20922 -12.13548 -11.97612 -11.66164 -11.37330 -11.08160 -10.45020 -10.13497 -9.23814 -8.82071 -8.21124 -7.96793 -6.16984 0.43927 0.91545 1.39398 1.41159 1.50894 2.09685 2.43878 2.48311 3.18507 3.23497 4.05512 4.14053 4.15321 4.34391 4.45534 4.57078 4.64918 4.75430 4.82617 4.86940 5.01843 5.16221 5.18586 5.27479 5.34976 5.39801 5.57912 5.72282 5.85969 5.92960 6.01404 6.14588 6.19831 6.42214 6.52070 6.65218 6.80021 6.97826 7.04638 7.49357 8.96354 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.009076 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.502608 B = 3084.317605 C = 3620.994304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.040 3.960 3 N -0.586 5.586 4 H 0.422 0.578 5 C 0.077 3.923 6 C -0.137 4.137 7 C -0.106 4.106 8 C -0.164 4.164 9 C -0.085 4.085 10 C -0.118 4.118 11 C -0.127 4.127 12 C 0.124 3.876 13 H 0.010 0.990 14 C -0.510 4.510 15 H 0.039 0.961 16 C 0.019 3.981 17 N -0.914 5.914 18 Si 0.944 3.056 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.275 1.275 22 C 0.083 3.917 23 N -0.844 5.844 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.145 0.855 28 H 0.155 0.845 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.260 0.740 32 H 0.028 0.972 33 H 0.034 0.966 34 H 0.332 0.668 35 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 11.812 2.690 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.065 4.065 3 N -0.192 5.192 4 H 0.261 0.739 5 C -0.031 4.031 6 C -0.158 4.158 7 C -0.125 4.125 8 C -0.184 4.184 9 C -0.103 4.103 10 C -0.123 4.123 11 C -0.133 4.133 12 C 0.104 3.896 13 H 0.028 0.972 14 C -0.549 4.549 15 H 0.057 0.943 16 C -0.180 4.180 17 N -0.554 5.554 18 Si 0.771 3.229 19 H -0.203 1.203 20 H -0.206 1.206 21 H -0.200 1.200 22 C -0.048 4.048 23 N -0.372 5.372 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.163 0.837 28 H 0.172 0.828 29 H 0.152 0.848 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.144 0.856 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.130 12.407 2.462 13.030 hybrid contribution -0.340 -1.667 -0.628 1.813 sum 2.791 10.740 1.834 11.247 Atomic orbital electron populations 1.20330 0.86616 1.03259 1.03148 1.20270 0.94204 0.85347 1.06716 1.41391 1.03109 1.07967 1.66767 0.73874 1.18532 0.85871 0.93815 1.04890 1.20284 0.89024 0.99858 1.06647 1.21064 0.97676 0.93739 1.00048 1.20827 0.97452 0.94951 1.05139 1.20435 0.91918 0.99073 0.98920 1.19382 0.93872 0.92908 1.06169 1.20520 0.90812 0.95325 1.06629 1.16984 0.93964 0.86552 0.92083 0.97243 1.21322 1.31686 0.95748 1.06096 0.94305 1.25591 0.95399 0.98033 0.98962 1.69974 1.38742 1.10282 1.36438 0.85764 0.78247 0.78292 0.80636 1.20309 1.20625 1.19996 1.21645 0.96297 0.97212 0.89657 1.58879 1.12187 1.61851 1.04255 0.90143 0.89541 0.91695 0.83697 0.82753 0.84810 0.88591 0.93088 0.95366 0.94767 0.85643 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.33 9.95 71.23 0.71 -1.62 16 2 C 0.04 1.53 7.08 40.86 0.29 1.82 16 3 N -0.59 -19.01 6.07 -175.92 -1.07 -20.08 16 4 H 0.42 9.95 8.96 -92.71 -0.83 9.12 16 5 C 0.08 2.80 7.28 39.03 0.28 3.08 16 6 C -0.14 -4.04 10.08 22.37 0.23 -3.81 16 7 C -0.11 -3.00 10.01 22.30 0.22 -2.77 16 8 C -0.16 -5.50 9.97 22.03 0.22 -5.28 16 9 C -0.08 -3.58 9.50 22.23 0.21 -3.37 16 10 C -0.12 -5.20 6.07 -20.20 -0.12 -5.32 16 11 C -0.13 -5.80 4.59 -18.62 -0.09 -5.88 16 12 C 0.12 6.31 2.23 -12.29 -0.03 6.29 16 13 H 0.01 0.52 6.80 -2.39 -0.02 0.50 16 14 C -0.51 -28.71 8.48 25.60 0.22 -28.49 16 15 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 16 C 0.02 1.03 5.29 84.66 0.45 1.48 16 17 N -0.91 -51.95 11.30 21.45 0.24 -51.71 16 18 Si 0.94 44.48 29.54 68.60 2.03 46.50 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 C 0.08 4.06 5.96 86.30 0.51 4.58 16 23 N -0.84 -34.42 9.32 -186.73 -1.74 -36.16 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.06 2.26 7.22 -2.39 -0.02 2.24 16 27 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 28 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 29 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 30 H 0.10 4.41 7.24 -2.91 -0.02 4.39 16 31 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.03 1.44 6.57 -2.39 -0.02 1.43 16 33 H 0.03 1.87 5.97 -2.39 -0.01 1.85 16 34 H 0.33 12.91 8.99 -89.70 -0.81 12.11 16 35 H 0.33 11.89 9.08 -89.69 -0.81 11.07 16 Total: -1.00 -66.01 291.37 1.25 -64.76 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -1.32 Total: 35.99 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 3.11 Total: -39.31 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -2.57 Total: -107.94 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -66.01 1.25 -64.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259532325.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.063 kcal (2) G-P(sol) polarization free energy of solvation -66.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds