Wall clock time and date at job start Mon Mar 30 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36824 * 125.03741 * 2 1 4 4 H 0.97005 * 125.06242 * 0.03152 * 3 2 1 5 5 C 1.37689 * 109.87428 * 180.29894 * 3 2 1 6 6 C 1.39125 * 133.51019 * 179.71511 * 5 3 2 7 7 C 1.37742 * 119.77744 * 180.02562 * 6 5 3 8 8 C 1.38823 * 120.66817 * 359.97438 * 7 6 5 9 9 C 1.36622 * 120.53324 * 0.02562 * 8 7 6 10 10 C 1.39630 * 119.75859 * 359.97438 * 9 8 7 11 11 C 1.34236 * 125.02960 * 179.83205 * 2 1 3 12 12 C 1.50703 * 126.50556 * 359.97438 * 11 2 1 13 13 H 1.08997 * 109.47213 * 179.69307 * 12 11 2 14 14 C 1.50698 * 109.47113 * 59.69049 * 12 11 2 15 15 H 1.08002 * 120.00108 * 264.80686 * 14 12 11 16 16 C 1.37878 * 119.99561 * 84.79932 * 14 12 11 17 17 N 1.31508 * 120.00572 * 5.19363 * 16 14 12 18 18 Si 1.86804 * 119.99643 * 185.18558 * 16 14 12 19 19 H 1.48499 * 109.47187 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47060 * 120.00581 * 18 16 14 21 21 H 1.48498 * 109.47448 * 240.00490 * 18 16 14 22 22 C 1.53007 * 109.46810 * 299.69119 * 12 11 2 23 23 N 1.46900 * 109.46510 * 185.53102 * 22 12 11 24 24 H 1.08992 * 109.47288 * 270.17044 * 1 2 3 25 25 H 1.09006 * 109.46868 * 30.17275 * 1 2 3 26 26 H 1.08998 * 109.47109 * 150.16778 * 1 2 3 27 27 H 1.08001 * 120.10852 * 0.04546 * 6 5 3 28 28 H 1.08002 * 119.66025 * 180.02562 * 7 6 5 29 29 H 1.08009 * 119.73697 * 180.02562 * 8 7 6 30 30 H 1.07993 * 120.12120 * 180.02562 * 9 8 7 31 31 H 0.96997 * 120.00760 * 179.97438 * 17 16 14 32 32 H 1.08993 * 109.47371 * 305.52950 * 22 12 11 33 33 H 1.08997 * 109.46646 * 65.53215 * 22 12 11 34 34 H 1.00903 * 110.99478 * 174.63604 * 23 22 12 35 35 H 1.00907 * 111.00072 * 298.58269 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2926 1.1203 0.0000 4 1 1.9624 2.0324 0.0004 5 6 3.6215 0.7601 -0.0068 6 6 4.8099 1.4835 -0.0147 7 6 6.0158 0.8179 -0.0207 8 6 6.0588 -0.5697 -0.0185 9 6 4.9041 -1.2998 -0.0107 10 6 3.6705 -0.6457 -0.0045 11 6 2.2776 -1.0992 0.0032 12 6 1.8003 -2.5286 0.0080 13 1 2.6599 -3.1988 0.0043 14 6 0.9606 -2.7819 -1.2175 15 1 -0.1146 -2.6966 -1.1625 16 6 1.5651 -3.1224 -2.4090 17 7 2.8636 -3.3261 -2.4530 18 14 0.5396 -3.2945 -3.9609 19 1 -0.8845 -3.0148 -3.6467 20 1 1.0200 -2.3284 -4.9813 21 1 0.6683 -4.6766 -4.4885 22 6 0.9614 -2.7820 1.2623 23 7 0.6071 -4.2058 1.3349 24 1 -0.3633 0.0031 1.0276 25 1 -0.3633 0.8885 -0.5165 26 1 -0.3633 -0.8915 -0.5112 27 1 4.7869 2.5633 -0.0158 28 1 6.9372 1.3813 -0.0265 29 1 7.0128 -1.0761 -0.0229 30 1 4.9453 -2.3790 -0.0086 31 1 3.2889 -3.5660 -3.2911 32 1 1.5363 -2.5052 2.1459 33 1 0.0519 -2.1830 1.2181 34 1 0.1280 -4.4156 2.1977 35 1 0.0536 -4.4818 0.5376 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259532330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:33 Heat of formation + Delta-G solvation = 25.690370 kcal Electronic energy + Delta-G solvation = -17688.694257 eV Core-core repulsion = 15071.439885 eV Total energy + Delta-G solvation = -2617.254372 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.97204 -37.96146 -36.79329 -34.09678 -32.92874 -31.65269 -30.67438 -28.88752 -27.26141 -26.02359 -23.14594 -22.36146 -21.94402 -19.85047 -18.52614 -18.13602 -16.90316 -16.57813 -16.17473 -15.81031 -15.49541 -15.11946 -14.70030 -14.54547 -14.39214 -13.70059 -13.45668 -13.31424 -13.06466 -12.95667 -12.73744 -12.44456 -12.32092 -12.22353 -12.09767 -11.61887 -11.24827 -10.91393 -10.41529 -10.11262 -9.22778 -8.82161 -8.17591 -7.90196 -6.03563 0.44606 0.90814 1.40803 1.44032 1.52314 2.11681 2.47155 2.50281 3.20480 3.36924 4.06434 4.09509 4.21544 4.34220 4.47546 4.60133 4.67517 4.69111 4.80976 4.86385 4.89422 4.96698 5.25874 5.26936 5.34621 5.37893 5.59417 5.69917 5.79081 5.92582 5.96141 6.16981 6.34497 6.41463 6.56755 6.65070 6.97792 7.02362 7.13575 7.59932 9.10972 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.009300 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.915003 B = 3010.142687 C = 3313.968265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.046 3.954 3 N -0.590 5.590 4 H 0.421 0.579 5 C 0.074 3.926 6 C -0.140 4.140 7 C -0.107 4.107 8 C -0.166 4.166 9 C -0.078 4.078 10 C -0.130 4.130 11 C -0.135 4.135 12 C 0.109 3.891 13 H 0.013 0.987 14 C -0.495 4.495 15 H 0.060 0.940 16 C 0.019 3.981 17 N -0.910 5.910 18 Si 0.938 3.062 19 H -0.258 1.258 20 H -0.296 1.296 21 H -0.288 1.288 22 C 0.086 3.914 23 N -0.853 5.853 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.091 0.909 31 H 0.251 0.749 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.338 0.662 35 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 9.614 5.823 11.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.059 4.059 3 N -0.196 5.196 4 H 0.260 0.740 5 C -0.033 4.033 6 C -0.161 4.161 7 C -0.126 4.126 8 C -0.185 4.185 9 C -0.097 4.097 10 C -0.135 4.135 11 C -0.142 4.142 12 C 0.089 3.911 13 H 0.031 0.969 14 C -0.533 4.533 15 H 0.078 0.922 16 C -0.181 4.181 17 N -0.549 5.549 18 Si 0.765 3.235 19 H -0.182 1.182 20 H -0.223 1.223 21 H -0.214 1.214 22 C -0.045 4.045 23 N -0.383 5.383 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.163 0.837 28 H 0.173 0.827 29 H 0.151 0.849 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.150 0.850 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.520 9.535 5.684 11.113 hybrid contribution -1.217 0.173 -1.208 1.723 sum -1.737 9.708 4.476 10.830 Atomic orbital electron populations 1.20510 0.86654 1.03932 1.02786 1.20209 0.94187 0.85016 1.06510 1.41472 1.03158 1.08121 1.66853 0.74024 1.18537 0.85942 0.93831 1.05032 1.20279 0.89077 0.99809 1.06926 1.21051 0.97687 0.93688 1.00132 1.20792 0.97371 0.94958 1.05400 1.20347 0.92055 0.98848 0.98462 1.19608 0.94369 0.93158 1.06352 1.20970 0.90041 0.96632 1.06541 1.17086 0.94532 0.87337 0.92099 0.96896 1.21149 0.92573 1.45189 0.94380 0.92204 1.25625 0.95521 0.95405 1.01508 1.70124 1.10625 1.48202 1.25946 0.85824 0.79983 0.76873 0.80810 1.18158 1.22291 1.21400 1.21685 0.97462 0.88047 0.97266 1.58527 1.53115 1.19415 1.07254 0.90211 0.90593 0.90119 0.83715 0.82699 0.84897 0.89097 0.93948 0.94362 0.95328 0.85022 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.60 8.77 71.24 0.62 -1.98 16 2 C 0.05 1.83 6.92 40.87 0.28 2.11 16 3 N -0.59 -20.40 6.07 -175.91 -1.07 -21.47 16 4 H 0.42 10.80 8.96 -92.70 -0.83 9.96 16 5 C 0.07 2.90 7.28 39.03 0.28 3.18 16 6 C -0.14 -4.45 10.08 22.37 0.23 -4.23 16 7 C -0.11 -3.27 10.01 22.29 0.22 -3.04 16 8 C -0.17 -6.02 9.97 22.03 0.22 -5.80 16 9 C -0.08 -3.57 10.05 22.23 0.22 -3.34 16 10 C -0.13 -6.08 6.35 -20.20 -0.13 -6.20 16 11 C -0.13 -6.39 5.04 -18.62 -0.09 -6.48 16 12 C 0.11 5.46 2.20 -12.28 -0.03 5.44 16 13 H 0.01 0.77 7.54 -2.39 -0.02 0.75 16 14 C -0.49 -25.68 6.06 25.60 0.16 -25.53 16 15 H 0.06 2.95 6.76 -2.91 -0.02 2.93 16 16 C 0.02 1.03 5.45 84.66 0.46 1.50 16 17 N -0.91 -54.45 12.93 21.45 0.28 -54.17 16 18 Si 0.94 43.77 29.54 68.60 2.03 45.80 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 C 0.09 3.58 5.98 86.31 0.52 4.10 16 23 N -0.85 -32.88 9.58 -186.72 -1.79 -34.67 16 24 H 0.08 2.17 7.92 -2.39 -0.02 2.15 16 25 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.08 2.95 5.19 -2.39 -0.01 2.94 16 27 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 28 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.03 1.08 6.18 -2.39 -0.01 1.07 16 34 H 0.34 10.40 9.08 -89.69 -0.81 9.59 16 35 H 0.34 13.55 8.24 -89.69 -0.74 12.81 16 Total: -1.00 -67.67 290.30 1.17 -66.51 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -1.25 Total: 38.28 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 2.97 Total: -40.28 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -2.58 Total: -110.31 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -67.67 1.17 -66.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259532330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.199 kcal (2) G-P(sol) polarization free energy of solvation -67.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds