Wall clock time and date at job start Mon Mar 30 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.36830 * 125.03043 * 2 1 4 4 H 0.96999 * 125.06397 * 0.03694 * 3 2 1 5 5 C 1.37682 * 109.87412 * 180.02562 * 3 2 1 6 6 C 1.39127 * 133.50966 * 179.97438 * 5 3 2 7 7 C 1.37750 * 119.77763 * 180.02562 * 6 5 3 8 8 C 1.38836 * 120.66954 * 359.97438 * 7 6 5 9 9 C 1.36625 * 120.52332 * 0.02562 * 8 7 6 10 10 C 1.39628 * 119.76801 * 359.97438 * 9 8 7 11 11 C 1.34234 * 125.03852 * 180.02562 * 2 1 3 12 12 C 1.50706 * 126.50150 * 0.02562 * 11 2 1 13 13 H 1.08997 * 109.46612 * 164.97411 * 12 11 2 14 14 N 1.46895 * 109.46907 * 44.97574 * 12 11 2 15 15 C 1.53002 * 109.47040 * 284.97687 * 12 11 2 16 16 C 1.50699 * 109.46962 * 184.99919 * 15 12 11 17 17 H 1.07998 * 120.00063 * 0.02562 * 16 15 12 18 18 C 1.37875 * 119.99785 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99877 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00125 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47038 * 90.00373 * 20 18 16 22 22 H 1.48504 * 109.47048 * 209.99947 * 20 18 16 23 23 H 1.48498 * 109.47050 * 329.99958 * 20 18 16 24 24 H 1.08999 * 109.47092 * 90.02745 * 1 2 3 25 25 H 1.09001 * 109.46785 * 210.02366 * 1 2 3 26 26 H 1.08997 * 109.47305 * 330.01734 * 1 2 3 27 27 H 1.08001 * 120.11452 * 0.03870 * 6 5 3 28 28 H 1.08006 * 119.66656 * 179.97438 * 7 6 5 29 29 H 1.07996 * 119.73506 * 180.27753 * 8 7 6 30 30 H 1.07994 * 120.11176 * 180.02562 * 9 8 7 31 31 H 1.00900 * 111.00000 * 176.04899 * 14 12 11 32 32 H 1.00900 * 111.00169 * 299.99787 * 14 12 11 33 33 H 1.09004 * 109.46847 * 304.99831 * 15 12 11 34 34 H 1.08996 * 109.47051 * 65.00049 * 15 12 11 35 35 H 0.96999 * 120.00444 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1204 0.0000 4 1 1.9622 2.0325 0.0005 5 6 3.6213 0.7605 -0.0006 6 6 4.8097 1.4840 -0.0013 7 6 6.0158 0.8185 -0.0023 8 6 6.0589 -0.5692 -0.0021 9 6 4.9042 -1.2994 -0.0014 10 6 3.6705 -0.6454 -0.0004 11 6 2.2777 -1.0991 -0.0005 12 6 1.8005 -2.5286 -0.0017 13 1 2.6270 -3.1872 -0.2683 14 7 0.7165 -2.6821 -0.9811 15 6 1.2849 -2.8953 1.3914 16 6 0.9223 -4.3576 1.4240 17 1 1.0475 -4.9648 0.5397 18 6 0.4307 -4.9203 2.5827 19 7 0.1148 -6.1966 2.6113 20 14 0.2148 -3.8702 4.1124 21 1 -1.1466 -3.2770 4.1175 22 1 0.3914 -4.7144 5.3213 23 1 1.2279 -2.7845 4.1146 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8901 0.5135 27 1 4.7867 2.5637 -0.0008 28 1 6.9372 1.3819 -0.0032 29 1 7.0129 -1.0755 0.0017 30 1 4.9455 -2.3785 -0.0008 31 1 0.4227 -3.6451 -1.0474 32 1 -0.0622 -2.0813 -0.7558 33 1 2.0615 -2.6969 2.1301 34 1 0.4032 -2.2971 1.6215 35 1 -0.2307 -6.5927 3.4265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259619882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:25 Heat of formation + Delta-G solvation = 45.146556 kcal Electronic energy + Delta-G solvation = -17273.989681 eV Core-core repulsion = 14657.578992 eV Total energy + Delta-G solvation = -2616.410688 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.08517 -37.04453 -35.59714 -32.49321 -31.21700 -30.76799 -28.86517 -28.49435 -26.71621 -24.05841 -22.03427 -21.18840 -20.70811 -18.58757 -17.45912 -16.73587 -16.13457 -14.97180 -14.66995 -14.56076 -14.07875 -13.90610 -13.60831 -13.26457 -12.99004 -12.71009 -12.41083 -12.11077 -12.03802 -11.78682 -11.38389 -11.20631 -10.86476 -10.75598 -10.37641 -10.14016 -9.79960 -9.25586 -9.17669 -8.58343 -7.88140 -7.82632 -7.15763 -6.09022 -4.07583 1.38750 1.88193 3.01941 3.26136 3.32905 3.35374 3.41261 4.18726 4.41614 4.94669 5.00678 5.19099 5.24336 5.30443 5.43779 5.52425 5.63048 5.70018 5.76546 5.90312 6.02384 6.15477 6.21824 6.24950 6.55740 6.61613 6.73679 6.87993 7.00379 7.14192 7.17579 7.36279 7.45204 7.73072 7.82434 8.06219 8.30772 8.48109 8.94869 9.53983 11.03775 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025009 B = 0.006908 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.327414 B = 4052.306705 C = 4367.275686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.071 3.929 3 N -0.597 5.597 4 H 0.408 0.592 5 C 0.095 3.905 6 C -0.137 4.137 7 C -0.105 4.105 8 C -0.156 4.156 9 C -0.062 4.062 10 C -0.096 4.096 11 C -0.132 4.132 12 C 0.171 3.829 13 H 0.078 0.922 14 N -0.844 5.844 15 C -0.037 4.037 16 C -0.522 4.522 17 H 0.075 0.925 18 C 0.070 3.930 19 N -0.900 5.900 20 Si 0.876 3.124 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.265 1.265 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.349 0.651 32 H 0.327 0.673 33 H 0.019 0.981 34 H 0.009 0.991 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 15.533 -4.952 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.035 4.035 3 N -0.201 5.201 4 H 0.244 0.756 5 C -0.012 4.012 6 C -0.158 4.158 7 C -0.125 4.125 8 C -0.175 4.175 9 C -0.081 4.081 10 C -0.101 4.101 11 C -0.139 4.139 12 C 0.059 3.941 13 H 0.096 0.904 14 N -0.375 5.375 15 C -0.076 4.076 16 C -0.560 4.560 17 H 0.093 0.907 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.703 3.297 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.190 1.190 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.163 0.837 32 H 0.140 0.860 33 H 0.037 0.963 34 H 0.028 0.972 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.843 15.730 -5.376 17.620 hybrid contribution -0.829 0.619 1.851 2.121 sum 5.014 16.349 -3.525 17.460 Atomic orbital electron populations 1.20604 0.88235 1.03494 1.03032 1.19957 0.93123 0.85222 1.05226 1.41593 1.03929 1.07800 1.66776 0.75563 1.18190 0.84539 0.94203 1.04271 1.19907 0.89849 0.98448 1.07608 1.20697 0.96343 0.94442 1.00983 1.20555 0.97825 0.93858 1.05282 1.20374 0.90521 0.99930 0.97263 1.19133 0.93424 0.91789 1.05742 1.20351 0.90038 0.94991 1.08473 1.19605 0.93968 0.88762 0.91768 0.90399 1.59289 1.13324 1.13270 1.51579 1.20300 0.95968 0.97282 0.94041 1.21092 1.42983 0.92812 0.99113 0.90740 1.24990 0.94793 0.94730 0.98630 1.69908 1.44333 1.11431 1.28190 0.86835 0.78878 0.80885 0.83077 1.20424 1.21361 1.18980 0.90258 0.89065 0.92022 0.86868 0.86313 0.86384 0.85875 0.83737 0.85953 0.96252 0.97235 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 8.66 36.01 0.31 -0.97 16 2 C 0.07 1.15 7.03 -81.77 -0.57 0.57 16 3 N -0.60 -8.43 6.07 -6.95 -0.04 -8.47 16 4 H 0.41 4.27 8.96 -40.82 -0.37 3.90 16 5 C 0.10 1.50 7.28 -83.99 -0.61 0.89 16 6 C -0.14 -1.83 10.08 -39.43 -0.40 -2.23 16 7 C -0.11 -1.34 10.01 -39.54 -0.40 -1.74 16 8 C -0.16 -2.16 9.97 -39.94 -0.40 -2.56 16 9 C -0.06 -1.03 10.05 -39.65 -0.40 -1.43 16 10 C -0.10 -1.73 6.35 -105.14 -0.67 -2.39 16 11 C -0.13 -2.48 5.28 -102.71 -0.54 -3.03 16 12 C 0.17 3.52 3.02 -68.86 -0.21 3.31 16 13 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 14 N -0.84 -15.90 9.12 -5.65 -0.05 -15.95 16 15 C -0.04 -0.87 3.62 -27.88 -0.10 -0.97 16 16 C -0.52 -14.33 9.10 -34.44 -0.31 -14.65 16 17 H 0.07 2.17 7.39 -52.49 -0.39 1.78 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 19 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 20 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 24 H 0.08 0.94 7.96 -51.93 -0.41 0.52 16 25 H 0.09 1.37 4.96 -51.93 -0.26 1.11 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 31 H 0.35 6.89 7.90 -39.29 -0.31 6.58 16 32 H 0.33 5.61 5.39 -39.29 -0.21 5.40 16 33 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 34 H 0.01 0.22 5.92 -51.93 -0.31 -0.09 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 285.81 15.07 4.31 4.31 Total: -1.00 -31.60 285.81 -8.41 -40.01 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.33 Total: 12.81 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -4.39 Total: -23.27 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.68 Total: -50.89 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.60 -8.41 -40.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259619882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.153 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds