Wall clock time and date at job start Mon Mar 30 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36957 * 125.06565 * 2 1 4 4 H 0.97002 * 125.07055 * 0.02562 * 3 2 1 5 5 C 1.37685 * 109.85671 * 179.85827 * 3 2 1 6 6 C 1.39260 * 133.35715 * 180.13393 * 5 3 2 7 7 C 1.37733 * 120.06250 * 180.28952 * 6 5 3 8 8 C 1.38747 * 120.74023 * 0.02562 * 7 6 5 9 9 C 1.38337 * 120.29148 * 359.95069 * 8 7 6 10 10 N 1.39568 * 120.23989 * 180.02562 * 9 8 7 11 11 C 1.40205 * 119.51784 * 0.05155 * 9 8 7 12 12 C 1.34214 * 125.06345 * 180.30813 * 2 1 3 13 13 C 1.50709 * 126.50479 * 359.97438 * 12 2 1 14 14 C 1.53002 * 109.46842 * 89.97926 * 13 12 2 15 15 C 1.50697 * 109.46893 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00248 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00007 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99889 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00015 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47393 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47593 * 119.99935 * 19 17 15 22 22 H 1.48510 * 109.47117 * 239.99697 * 19 17 15 23 23 H 1.09002 * 109.47152 * 269.69375 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69475 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69456 * 1 2 3 26 26 H 1.07998 * 119.97168 * 0.26177 * 6 5 3 27 27 H 1.07995 * 119.63121 * 179.97438 * 7 6 5 28 28 H 1.08005 * 119.85618 * 179.97438 * 8 7 6 29 29 H 0.96998 * 120.00084 * 180.02562 * 10 9 8 30 30 H 0.97004 * 120.00189 * 359.97438 * 10 9 8 31 31 H 1.08999 * 109.46908 * 209.97982 * 13 12 2 32 32 H 1.08999 * 109.46873 * 329.98094 * 13 12 2 33 33 H 1.08998 * 109.46694 * 299.99931 * 14 13 12 34 34 H 1.08994 * 109.47465 * 59.99997 * 14 13 12 35 35 H 0.96997 * 119.99846 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.1210 0.0000 4 1 1.9643 2.0333 0.0004 5 6 3.6225 0.7598 0.0032 6 6 4.8107 1.4861 0.0069 7 6 6.0211 0.8288 0.0036 8 6 6.0753 -0.5576 -0.0041 9 6 4.9089 -1.3015 -0.0074 10 7 4.9647 -2.6960 -0.0146 11 6 3.6704 -0.6443 -0.0041 12 6 2.2781 -1.0986 -0.0059 13 6 1.8016 -2.5283 -0.0131 14 6 1.6393 -3.0045 -1.4580 15 6 1.1622 -4.4340 -1.4652 16 1 0.9922 -4.9512 -0.5324 17 6 0.9438 -5.0819 -2.6625 18 7 1.1514 -4.4522 -3.7983 19 14 0.3532 -6.8539 -2.6713 20 1 0.1977 -7.3310 -1.2737 21 1 -0.9539 -6.9367 -3.3713 22 1 1.3467 -7.7034 -3.3762 23 1 -0.3633 -0.0055 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8927 -0.5091 26 1 4.7831 2.5657 0.0120 27 1 6.9383 1.3989 0.0061 28 1 7.0322 -1.0583 -0.0071 29 1 4.1447 -3.2142 -0.0173 30 1 5.8234 -3.1471 -0.0177 31 1 2.5314 -3.1570 0.4970 32 1 0.8427 -2.5943 0.5011 33 1 0.9095 -2.3757 -1.9679 34 1 2.5981 -2.9385 -1.9722 35 1 0.9974 -4.9078 -4.6406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259638579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:01 Heat of formation + Delta-G solvation = 33.033510 kcal Electronic energy + Delta-G solvation = -17163.132860 eV Core-core repulsion = 14546.196911 eV Total energy + Delta-G solvation = -2616.935949 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.85466 -37.04381 -34.76515 -33.29309 -31.80856 -30.52860 -29.25671 -27.72517 -26.25537 -24.45353 -21.77100 -21.28552 -20.88150 -18.39819 -17.26669 -16.26353 -16.19213 -15.89558 -14.72319 -14.53820 -14.27497 -14.14592 -13.27244 -13.01534 -12.72711 -12.52140 -12.10154 -11.90559 -11.85058 -11.57772 -11.18543 -11.06165 -10.93968 -10.74176 -10.51919 -10.03414 -9.71548 -9.57061 -9.04774 -8.33280 -8.06189 -7.69121 -6.48131 -5.97521 -4.01180 1.78067 2.13802 3.21068 3.30903 3.38912 3.42498 3.54273 4.36939 4.42220 4.47506 5.15567 5.28798 5.37494 5.51173 5.59883 5.65129 5.82582 5.88001 5.93121 6.11397 6.29786 6.31643 6.40681 6.57560 6.71657 6.84490 6.98336 7.01599 7.16095 7.40083 7.58430 7.73861 7.87066 8.00228 8.05320 8.05645 8.29801 8.43472 9.07389 9.63039 11.12867 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.006482 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.652515 B = 4318.654318 C = 5018.604526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.039 3.961 3 N -0.596 5.596 4 H 0.407 0.593 5 C 0.142 3.858 6 C -0.207 4.207 7 C -0.048 4.048 8 C -0.258 4.258 9 C 0.281 3.719 10 N -0.868 5.868 11 C -0.167 4.167 12 C -0.122 4.122 13 C -0.046 4.046 14 C 0.030 3.970 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.408 0.592 30 H 0.393 0.607 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 10.073 8.317 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.066 4.066 3 N -0.199 5.199 4 H 0.243 0.757 5 C 0.032 3.968 6 C -0.230 4.230 7 C -0.068 4.068 8 C -0.284 4.284 9 C 0.172 3.828 10 N -0.407 5.407 11 C -0.175 4.175 12 C -0.129 4.129 13 C -0.084 4.084 14 C -0.007 4.007 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.085 0.915 24 H 0.109 0.891 25 H 0.078 0.922 26 H 0.126 0.874 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.241 0.759 30 H 0.220 0.780 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.685 10.127 8.127 13.805 hybrid contribution -0.358 -0.828 -0.280 0.945 sum 4.328 9.299 7.847 12.914 Atomic orbital electron populations 1.20381 0.88198 1.03637 1.02179 1.19911 0.93024 0.85241 1.08408 1.41608 1.03973 1.07706 1.66624 0.75685 1.17915 0.84373 0.93246 1.01254 1.19578 0.89677 0.98067 1.15683 1.20332 0.96084 0.93463 0.96930 1.20130 0.95689 0.93873 1.18665 1.17251 0.91728 0.83763 0.90014 1.42871 1.11471 1.03549 1.82827 1.18603 0.92137 0.92229 1.14557 1.20400 0.89834 0.95530 1.07123 1.20244 0.98946 0.88115 1.01085 1.19062 0.97307 0.95205 0.89111 1.21324 1.44754 0.97732 0.92224 0.92618 1.25021 0.95678 0.97908 0.95739 1.69994 1.49183 1.36746 0.97228 0.86592 0.78414 0.85266 0.78039 1.19739 1.21075 1.21109 0.91479 0.89121 0.92230 0.87390 0.86609 0.86829 0.75857 0.78002 0.93120 0.92355 0.96548 0.96462 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 9.99 36.01 0.36 -0.87 16 2 C 0.04 0.68 7.09 -81.72 -0.58 0.10 16 3 N -0.60 -9.16 6.08 -6.94 -0.04 -9.20 16 4 H 0.41 4.76 8.96 -40.82 -0.37 4.40 16 5 C 0.14 2.44 7.27 -84.01 -0.61 1.83 16 6 C -0.21 -3.10 10.06 -39.39 -0.40 -3.50 16 7 C -0.05 -0.69 10.00 -39.58 -0.40 -1.08 16 8 C -0.26 -4.01 9.88 -39.36 -0.39 -4.40 16 9 C 0.28 5.01 6.78 -83.56 -0.57 4.45 16 10 N -0.87 -14.36 9.09 32.53 0.30 -14.07 16 11 C -0.17 -3.22 6.27 -105.00 -0.66 -3.88 16 12 C -0.12 -2.42 5.57 -102.73 -0.57 -2.99 16 13 C -0.05 -0.96 4.57 -27.88 -0.13 -1.09 16 14 C 0.03 0.78 4.96 -27.88 -0.14 0.64 16 15 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.09 1.45 7.66 -51.93 -0.40 1.05 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 27 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.41 7.39 5.77 -40.82 -0.24 7.16 16 30 H 0.39 5.27 8.84 -40.82 -0.36 4.91 16 31 H 0.05 1.03 5.96 -51.93 -0.31 0.72 16 32 H 0.06 1.17 7.69 -51.93 -0.40 0.77 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 294.01 15.07 4.43 4.43 Total: -1.00 -31.98 294.01 -8.66 -40.63 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -4.57 Total: 11.92 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -4.49 Total: -24.02 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.99 Total: -49.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.98 -8.66 -40.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259638579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.664 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds