Wall clock time and date at job start Mon Mar 30 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36957 * 125.06565 * 2 1 4 4 H 0.97002 * 125.07055 * 0.02562 * 3 2 1 5 5 C 1.37685 * 109.85671 * 179.85827 * 3 2 1 6 6 C 1.39260 * 133.35715 * 180.13393 * 5 3 2 7 7 C 1.37733 * 120.06250 * 180.28952 * 6 5 3 8 8 C 1.38747 * 120.74023 * 0.02562 * 7 6 5 9 9 C 1.38337 * 120.29148 * 359.95069 * 8 7 6 10 10 N 1.39568 * 120.23989 * 180.02562 * 9 8 7 11 11 C 1.40205 * 119.51784 * 0.05155 * 9 8 7 12 12 C 1.34214 * 125.06345 * 180.30813 * 2 1 3 13 13 C 1.50709 * 126.50479 * 359.97438 * 12 2 1 14 14 C 1.53002 * 109.46842 * 89.97926 * 13 12 2 15 15 C 1.50697 * 109.46893 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00248 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00007 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99889 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00015 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47393 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47593 * 119.99935 * 19 17 15 22 22 H 1.48510 * 109.47117 * 239.99697 * 19 17 15 23 23 H 1.09002 * 109.47152 * 269.69375 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69475 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69456 * 1 2 3 26 26 H 1.07998 * 119.97168 * 0.26177 * 6 5 3 27 27 H 1.07995 * 119.63121 * 179.97438 * 7 6 5 28 28 H 1.08005 * 119.85618 * 179.97438 * 8 7 6 29 29 H 0.96998 * 120.00084 * 180.02562 * 10 9 8 30 30 H 0.97004 * 120.00189 * 359.97438 * 10 9 8 31 31 H 1.08999 * 109.46908 * 209.97982 * 13 12 2 32 32 H 1.08999 * 109.46873 * 329.98094 * 13 12 2 33 33 H 1.08998 * 109.46694 * 299.99931 * 14 13 12 34 34 H 1.08994 * 109.47465 * 59.99997 * 14 13 12 35 35 H 0.96997 * 119.99846 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.1210 0.0000 4 1 1.9643 2.0333 0.0004 5 6 3.6225 0.7598 0.0032 6 6 4.8107 1.4861 0.0069 7 6 6.0211 0.8288 0.0036 8 6 6.0753 -0.5576 -0.0041 9 6 4.9089 -1.3015 -0.0074 10 7 4.9647 -2.6960 -0.0146 11 6 3.6704 -0.6443 -0.0041 12 6 2.2781 -1.0986 -0.0059 13 6 1.8016 -2.5283 -0.0131 14 6 1.6393 -3.0045 -1.4580 15 6 1.1622 -4.4340 -1.4652 16 1 0.9922 -4.9512 -0.5324 17 6 0.9438 -5.0819 -2.6625 18 7 1.1514 -4.4522 -3.7983 19 14 0.3532 -6.8539 -2.6713 20 1 0.1977 -7.3310 -1.2737 21 1 -0.9539 -6.9367 -3.3713 22 1 1.3467 -7.7034 -3.3762 23 1 -0.3633 -0.0055 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8927 -0.5091 26 1 4.7831 2.5657 0.0120 27 1 6.9383 1.3989 0.0061 28 1 7.0322 -1.0583 -0.0071 29 1 4.1447 -3.2142 -0.0173 30 1 5.8234 -3.1471 -0.0177 31 1 2.5314 -3.1570 0.4970 32 1 0.8427 -2.5943 0.5011 33 1 0.9095 -2.3757 -1.9679 34 1 2.5981 -2.9385 -1.9722 35 1 0.9974 -4.9078 -4.6406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259638579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:01 Heat of formation + Delta-G solvation = 13.030724 kcal Electronic energy + Delta-G solvation = -17164.000246 eV Core-core repulsion = 14546.196911 eV Total energy + Delta-G solvation = -2617.803335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.13286 -38.27706 -36.37929 -34.98104 -33.51815 -31.79851 -30.83774 -28.98231 -27.79707 -26.17144 -23.16115 -23.01013 -22.16862 -19.82621 -18.63635 -18.25466 -17.52317 -17.18550 -16.50673 -15.93811 -15.63679 -15.35768 -14.78598 -14.56550 -14.29686 -13.87564 -13.80639 -13.36733 -13.10248 -12.87411 -12.85137 -12.78375 -12.46281 -12.31199 -12.12672 -11.67115 -11.44784 -11.17644 -11.09323 -10.53059 -9.46434 -8.94542 -8.16758 -7.75349 -6.27921 0.53678 0.88046 1.41261 1.41687 1.54907 1.85660 2.34052 2.43437 3.11420 3.16830 3.17134 3.90660 4.17153 4.29032 4.32854 4.49942 4.52733 4.68681 4.78304 4.87490 4.92123 4.99279 5.04241 5.18326 5.21080 5.27528 5.54631 5.55537 5.75724 5.80069 5.89329 5.93748 6.05607 6.27284 6.30234 6.71774 6.89361 6.91702 7.06155 7.41602 8.95461 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.006482 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.652515 B = 4318.654318 C = 5018.604526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.050 3.950 3 N -0.583 5.583 4 H 0.426 0.574 5 C 0.126 3.874 6 C -0.206 4.206 7 C -0.048 4.048 8 C -0.258 4.258 9 C 0.249 3.751 10 N -0.871 5.871 11 C -0.201 4.201 12 C -0.172 4.172 13 C -0.027 4.027 14 C 0.046 3.954 15 C -0.537 4.537 16 H 0.064 0.936 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.259 1.259 21 H -0.280 1.280 22 H -0.281 1.281 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.139 0.861 27 H 0.154 0.846 28 H 0.135 0.865 29 H 0.398 0.602 30 H 0.404 0.596 31 H 0.052 0.948 32 H 0.063 0.937 33 H -0.014 1.014 34 H -0.018 1.018 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.160 11.026 9.298 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.057 4.057 3 N -0.188 5.188 4 H 0.265 0.735 5 C 0.017 3.983 6 C -0.229 4.229 7 C -0.067 4.067 8 C -0.283 4.283 9 C 0.141 3.859 10 N -0.411 5.411 11 C -0.209 4.209 12 C -0.178 4.178 13 C -0.065 4.065 14 C 0.009 3.991 15 C -0.575 4.575 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.788 3.212 20 H -0.183 1.183 21 H -0.205 1.205 22 H -0.207 1.207 23 H 0.109 0.891 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.157 0.843 27 H 0.172 0.828 28 H 0.153 0.847 29 H 0.229 0.771 30 H 0.233 0.767 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.005 0.995 34 H 0.000 1.000 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.038 11.115 9.128 15.240 hybrid contribution -0.410 -1.024 -0.588 1.250 sum 4.628 10.091 8.540 14.006 Atomic orbital electron populations 1.20437 0.86234 1.03766 1.03745 1.20290 0.94295 0.85274 1.05833 1.41540 1.03326 1.08206 1.65759 0.73476 1.18275 0.85601 0.92806 1.01634 1.20006 0.88941 0.99640 1.14304 1.20821 0.97458 0.93157 0.95298 1.20514 0.95745 0.94730 1.17322 1.17614 0.92375 0.84270 0.91608 1.42819 1.11529 1.03455 1.83269 1.18965 0.92372 0.93748 1.15837 1.20358 0.91165 0.95263 1.11022 1.19897 0.99307 0.89685 0.97616 1.18818 0.94232 0.94335 0.91698 1.21735 1.44396 0.98693 0.92662 0.91827 1.25967 0.95727 1.02763 0.95253 1.70142 1.50433 1.38883 0.97981 0.85425 0.77802 0.79301 0.78656 1.18304 1.20540 1.20696 0.89058 0.91470 0.89590 0.84325 0.82835 0.84745 0.77123 0.76675 0.92947 0.91864 0.99549 0.99956 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.32 9.99 71.24 0.71 -1.60 16 2 C 0.05 1.70 7.09 40.84 0.29 1.99 16 3 N -0.58 -17.10 6.08 -175.88 -1.07 -18.17 16 4 H 0.43 8.94 8.96 -92.71 -0.83 8.11 16 5 C 0.13 4.21 7.27 39.02 0.28 4.49 16 6 C -0.21 -5.63 10.06 22.40 0.23 -5.40 16 7 C -0.05 -1.23 10.00 22.27 0.22 -1.00 16 8 C -0.26 -7.65 9.88 22.42 0.22 -7.42 16 9 C 0.25 8.98 6.78 38.41 0.26 9.24 16 10 N -0.87 -29.84 9.09 -50.98 -0.46 -30.30 16 11 C -0.20 -7.87 6.27 -20.11 -0.13 -7.99 16 12 C -0.17 -6.95 5.57 -18.64 -0.10 -7.06 16 13 C -0.03 -1.18 4.57 29.85 0.14 -1.04 16 14 C 0.05 2.52 4.96 29.85 0.15 2.66 16 15 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 16 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 17 C 0.00 0.02 5.46 84.65 0.46 0.49 16 18 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 19 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.07 2.18 7.66 -2.39 -0.02 2.16 16 25 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 27 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 28 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.40 15.21 5.77 -92.71 -0.54 14.67 16 30 H 0.40 11.13 8.84 -92.71 -0.82 10.31 16 31 H 0.05 2.22 5.96 -2.39 -0.01 2.21 16 32 H 0.06 2.62 7.69 -2.39 -0.02 2.60 16 33 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 34 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 35 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -70.89 294.01 2.69 -68.20 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -1.06 Total: 34.27 kcal Atomic # 6 Polarization: -45.85 SS G_CDS: 2.96 Total: -42.89 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -1.25 Total: -105.92 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -70.89 2.69 -68.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259638579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.236 kcal (2) G-P(sol) polarization free energy of solvation -70.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds