Wall clock time and date at job start Mon Mar 30 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38822 * 119.67033 * 2 1 4 4 C 1.36632 * 120.53342 * 180.02562 * 3 2 1 5 5 C 1.39629 * 119.76073 * 0.02562 * 4 3 2 6 6 C 1.46490 * 134.03408 * 179.97438 * 5 4 3 7 7 C 1.50698 * 126.50145 * 0.02562 * 6 5 4 8 8 H 1.08991 * 109.47070 * 39.96941 * 7 6 5 9 9 N 1.46899 * 109.47304 * 159.97404 * 7 6 5 10 10 C 1.50698 * 109.46678 * 279.97194 * 7 6 5 11 11 H 1.08002 * 120.00561 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99949 * 179.97438 * 10 7 6 13 13 N 1.31519 * 119.99832 * 0.02562 * 12 10 7 14 14 Si 1.86801 * 120.00330 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.46544 * 60.00757 * 14 12 10 16 16 H 1.48496 * 109.47030 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47142 * 300.00268 * 14 12 10 18 18 C 1.34244 * 106.99654 * 179.97438 * 6 5 4 19 19 N 1.36833 * 109.93092 * 0.02562 * 18 6 5 20 20 C 1.46499 * 125.06296 * 180.02562 * 19 18 6 21 21 C 1.37692 * 109.87406 * 0.26052 * 19 18 6 22 22 C 1.37747 * 119.66504 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47123 * 89.99218 * 1 2 3 24 24 H 1.09000 * 109.46916 * 209.99849 * 1 2 3 25 25 H 1.09000 * 109.46872 * 329.99756 * 1 2 3 26 26 H 1.08007 * 119.73805 * 359.97438 * 3 2 1 27 27 H 1.07991 * 120.11963 * 179.97438 * 4 3 2 28 28 H 1.00905 * 111.00096 * 59.99597 * 9 7 6 29 29 H 1.00892 * 111.00009 * 183.95135 * 9 7 6 30 30 H 0.97003 * 120.00276 * 179.97438 * 13 12 10 31 31 H 1.08003 * 125.03279 * 180.02562 * 18 6 5 32 32 H 1.09002 * 109.47391 * 90.01941 * 20 19 18 33 33 H 1.09001 * 109.46813 * 330.01997 * 20 19 18 34 34 H 1.09004 * 109.47041 * 210.02124 * 20 19 18 35 35 H 1.08006 * 120.11153 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2062 0.0000 4 6 3.5604 1.2268 -0.0005 5 6 4.2716 0.0252 -0.0016 6 6 5.6966 -0.3145 -0.0029 7 6 6.8495 0.6559 -0.0028 8 1 6.6208 1.4918 0.6582 9 7 8.0624 -0.0246 0.4701 10 6 7.0744 1.1688 -1.4019 11 1 6.4451 0.8266 -2.2102 12 6 8.0828 2.0758 -1.6499 13 7 8.8488 2.4929 -0.6655 14 14 8.3621 2.7110 -3.3842 15 1 7.1358 3.3984 -3.8629 16 1 9.4981 3.6674 -3.3841 17 1 8.6746 1.5720 -4.2843 18 6 5.7806 -1.6543 -0.0030 19 7 4.5259 -2.2003 -0.0024 20 6 4.2327 -3.6357 -0.0018 21 6 3.5800 -1.1997 -0.0079 22 6 2.1888 -1.1969 0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6445 2.1360 -0.0004 27 1 4.0881 2.1689 -0.0009 28 1 8.2957 -0.8041 -0.1267 29 1 8.8349 0.6206 0.5405 30 1 9.5586 3.1307 -0.8400 31 1 6.7020 -2.2178 -0.0034 32 1 4.1599 -3.9912 1.0260 33 1 5.0320 -4.1700 -0.5153 34 1 3.2880 -3.8137 -0.5157 35 1 1.6451 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259642847.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:53 Heat of formation + Delta-G solvation = 51.020848 kcal Electronic energy + Delta-G solvation = -17195.085932 eV Core-core repulsion = 14578.929972 eV Total energy + Delta-G solvation = -2616.155960 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66161 -36.97535 -34.87150 -32.51647 -31.24279 -29.92308 -29.53030 -26.53074 -25.59338 -25.15348 -22.29183 -21.54264 -20.19122 -18.33875 -16.46307 -16.29380 -15.72024 -14.82024 -14.72952 -14.47043 -13.73786 -13.54791 -13.39593 -13.36506 -12.80033 -12.50671 -12.30255 -12.14156 -11.84934 -11.59095 -11.17454 -10.96055 -10.86877 -10.62817 -10.45389 -10.25659 -9.98270 -9.58545 -8.83358 -8.51461 -7.46511 -7.18740 -6.74299 -5.98049 -4.15341 1.73114 2.19063 3.28582 3.33304 3.35652 3.39792 3.55486 4.38518 4.53004 5.02977 5.11661 5.20741 5.31933 5.38178 5.49874 5.58163 5.61155 5.65463 5.77108 5.96297 6.00743 6.14628 6.34280 6.45540 6.59815 6.72133 6.94720 7.07094 7.21107 7.45871 7.46982 7.79079 7.83696 7.90980 8.07352 8.23430 8.78818 9.03008 9.18974 9.55677 10.97219 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.007194 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.620979 B = 3891.041619 C = 4570.995390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.078 4.078 3 C -0.164 4.164 4 C -0.048 4.048 5 C -0.101 4.101 6 C -0.099 4.099 7 C 0.272 3.728 8 H 0.045 0.955 9 N -0.851 5.851 10 C -0.535 4.535 11 H 0.054 0.946 12 C 0.064 3.936 13 N -0.897 5.897 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.021 3.979 19 N -0.497 5.497 20 C 0.087 3.913 21 C 0.097 3.903 22 C -0.142 4.142 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.308 0.692 29 H 0.355 0.645 30 H 0.264 0.736 31 H 0.161 0.839 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.127 -8.147 1.269 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.079 4.079 3 C -0.184 4.184 4 C -0.066 4.066 5 C -0.107 4.107 6 C -0.105 4.105 7 C 0.162 3.838 8 H 0.063 0.937 9 N -0.380 5.380 10 C -0.575 4.575 11 H 0.072 0.928 12 C -0.137 4.137 13 N -0.537 5.537 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.204 1.204 18 C -0.100 4.100 19 N -0.183 5.183 20 C -0.055 4.055 21 C -0.010 4.010 22 C -0.163 4.163 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.132 0.868 27 H 0.142 0.858 28 H 0.117 0.883 29 H 0.171 0.829 30 H 0.074 0.926 31 H 0.178 0.822 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.388 -8.519 1.999 14.362 hybrid contribution 0.658 0.570 -2.023 2.203 sum -10.730 -7.949 -0.025 13.353 Atomic orbital electron populations 1.20687 0.91836 1.02003 1.01635 1.19376 0.95017 0.92488 1.01033 1.20375 0.93956 0.96772 1.07273 1.20383 0.93205 0.97166 0.95887 1.19207 0.93366 0.91955 1.06166 1.20984 0.92795 0.93237 1.03498 1.17336 0.83757 0.89002 0.93713 0.93720 1.59476 1.09566 1.14098 1.54830 1.21832 1.15517 1.25176 0.94952 0.92820 1.25013 0.95947 0.95656 0.97111 1.69736 1.20066 1.32821 1.31029 0.86624 0.77700 0.78673 0.84811 1.20198 1.21271 1.20396 1.21396 0.86233 0.93922 1.08463 1.43650 1.04969 1.04482 1.65174 1.21738 1.02240 0.79536 1.02009 1.18221 0.90509 0.88048 1.04175 1.19623 0.89931 0.97381 1.09368 0.91814 0.92294 0.91889 0.86836 0.85821 0.88343 0.82868 0.92557 0.82162 0.92183 0.90517 0.91065 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 9.99 36.01 0.36 -0.84 16 2 C -0.08 -1.21 5.88 -104.58 -0.61 -1.83 16 3 C -0.16 -2.78 9.61 -39.95 -0.38 -3.16 16 4 C -0.05 -0.96 10.05 -39.64 -0.40 -1.36 16 5 C -0.10 -2.20 6.35 -105.13 -0.67 -2.86 16 6 C -0.10 -2.27 5.41 -102.71 -0.56 -2.82 16 7 C 0.27 6.98 3.23 -70.02 -0.23 6.76 16 8 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 9 N -0.85 -20.40 8.88 -6.66 -0.06 -20.46 16 10 C -0.53 -14.70 8.71 -34.44 -0.30 -15.00 16 11 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.76 5.38 -17.82 -0.10 1.66 16 13 N -0.90 -24.97 11.54 55.43 0.64 -24.33 16 14 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.02 0.42 10.54 -16.73 -0.18 0.24 16 19 N -0.50 -8.75 3.18 -121.80 -0.39 -9.14 16 20 C 0.09 1.06 11.03 59.85 0.66 1.72 16 21 C 0.10 1.85 6.81 -83.98 -0.57 1.28 16 22 C -0.14 -2.32 9.60 -39.43 -0.38 -2.70 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 25 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 26 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 27 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 28 H 0.31 6.93 8.00 -39.29 -0.31 6.62 16 29 H 0.36 9.12 7.08 -39.30 -0.28 8.84 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.16 2.88 7.31 -52.48 -0.38 2.50 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 296.48 15.07 4.47 4.47 Total: -1.00 -29.85 296.48 -8.45 -38.29 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -4.74 Total: 13.75 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -3.35 Total: -18.91 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.19 Total: -53.93 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.85 -8.45 -38.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259642847.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.316 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds