Wall clock time and date at job start Mon Mar 30 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38822 * 119.67033 * 2 1 4 4 C 1.36632 * 120.53342 * 180.02562 * 3 2 1 5 5 C 1.39629 * 119.76073 * 0.02562 * 4 3 2 6 6 C 1.46490 * 134.03408 * 179.97438 * 5 4 3 7 7 C 1.50698 * 126.50145 * 0.02562 * 6 5 4 8 8 H 1.08991 * 109.47070 * 39.96941 * 7 6 5 9 9 N 1.46899 * 109.47304 * 159.97404 * 7 6 5 10 10 C 1.50698 * 109.46678 * 279.97194 * 7 6 5 11 11 H 1.08002 * 120.00561 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99949 * 179.97438 * 10 7 6 13 13 N 1.31519 * 119.99832 * 0.02562 * 12 10 7 14 14 Si 1.86801 * 120.00330 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.46544 * 60.00757 * 14 12 10 16 16 H 1.48496 * 109.47030 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47142 * 300.00268 * 14 12 10 18 18 C 1.34244 * 106.99654 * 179.97438 * 6 5 4 19 19 N 1.36833 * 109.93092 * 0.02562 * 18 6 5 20 20 C 1.46499 * 125.06296 * 180.02562 * 19 18 6 21 21 C 1.37692 * 109.87406 * 0.26052 * 19 18 6 22 22 C 1.37747 * 119.66504 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47123 * 89.99218 * 1 2 3 24 24 H 1.09000 * 109.46916 * 209.99849 * 1 2 3 25 25 H 1.09000 * 109.46872 * 329.99756 * 1 2 3 26 26 H 1.08007 * 119.73805 * 359.97438 * 3 2 1 27 27 H 1.07991 * 120.11963 * 179.97438 * 4 3 2 28 28 H 1.00905 * 111.00096 * 59.99597 * 9 7 6 29 29 H 1.00892 * 111.00009 * 183.95135 * 9 7 6 30 30 H 0.97003 * 120.00276 * 179.97438 * 13 12 10 31 31 H 1.08003 * 125.03279 * 180.02562 * 18 6 5 32 32 H 1.09002 * 109.47391 * 90.01941 * 20 19 18 33 33 H 1.09001 * 109.46813 * 330.01997 * 20 19 18 34 34 H 1.09004 * 109.47041 * 210.02124 * 20 19 18 35 35 H 1.08006 * 120.11153 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2062 0.0000 4 6 3.5604 1.2268 -0.0005 5 6 4.2716 0.0252 -0.0016 6 6 5.6966 -0.3145 -0.0029 7 6 6.8495 0.6559 -0.0028 8 1 6.6208 1.4918 0.6582 9 7 8.0624 -0.0246 0.4701 10 6 7.0744 1.1688 -1.4019 11 1 6.4451 0.8266 -2.2102 12 6 8.0828 2.0758 -1.6499 13 7 8.8488 2.4929 -0.6655 14 14 8.3621 2.7110 -3.3842 15 1 7.1358 3.3984 -3.8629 16 1 9.4981 3.6674 -3.3841 17 1 8.6746 1.5720 -4.2843 18 6 5.7806 -1.6543 -0.0030 19 7 4.5259 -2.2003 -0.0024 20 6 4.2327 -3.6357 -0.0018 21 6 3.5800 -1.1997 -0.0079 22 6 2.1888 -1.1969 0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6445 2.1360 -0.0004 27 1 4.0881 2.1689 -0.0009 28 1 8.2957 -0.8041 -0.1267 29 1 8.8349 0.6206 0.5405 30 1 9.5586 3.1307 -0.8400 31 1 6.7020 -2.2178 -0.0034 32 1 4.1599 -3.9912 1.0260 33 1 5.0320 -4.1700 -0.5153 34 1 3.2880 -3.8137 -0.5157 35 1 1.6451 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259642847.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:52 Heat of formation + Delta-G solvation = 32.959312 kcal Electronic energy + Delta-G solvation = -17195.869139 eV Core-core repulsion = 14578.929972 eV Total energy + Delta-G solvation = -2616.939167 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.07930 -38.30195 -36.76129 -34.08294 -32.98803 -31.24737 -30.93275 -28.31155 -26.92499 -26.65016 -24.03000 -22.99344 -21.54470 -19.90481 -18.52351 -17.85574 -17.06364 -16.55805 -16.07121 -15.94471 -15.50887 -14.89060 -14.73509 -14.69764 -14.34254 -14.23800 -13.46831 -13.32035 -13.05705 -12.97049 -12.83776 -12.72606 -12.68528 -12.25321 -12.02198 -11.84836 -11.65943 -11.39508 -10.72766 -10.20346 -9.19979 -8.85501 -8.34171 -7.97494 -6.33513 0.33149 0.80626 1.36043 1.37293 1.45652 1.99103 2.10959 2.39929 3.06875 3.07257 3.88797 4.03563 4.11431 4.15435 4.32872 4.46857 4.52616 4.59394 4.70341 4.75843 4.82829 4.95741 4.99493 5.03684 5.09587 5.23043 5.35327 5.61160 5.66339 5.78105 5.81379 6.02429 6.12739 6.15855 6.45233 6.64043 6.72043 6.97969 7.15430 7.42776 8.85405 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.007194 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.620979 B = 3891.041619 C = 4570.995390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.075 4.075 3 C -0.158 4.158 4 C -0.084 4.084 5 C -0.143 4.143 6 C -0.153 4.153 7 C 0.282 3.718 8 H -0.003 1.003 9 N -0.839 5.839 10 C -0.549 4.549 11 H 0.037 0.963 12 C 0.022 3.978 13 N -0.917 5.917 14 Si 0.955 3.045 15 H -0.278 1.278 16 H -0.278 1.278 17 H -0.272 1.272 18 C 0.037 3.963 19 N -0.493 5.493 20 C 0.078 3.922 21 C 0.086 3.914 22 C -0.137 4.137 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.137 0.863 27 H 0.098 0.902 28 H 0.318 0.682 29 H 0.345 0.655 30 H 0.267 0.733 31 H 0.177 0.823 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.365 -10.143 0.527 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.077 4.077 3 C -0.177 4.177 4 C -0.103 4.103 5 C -0.148 4.148 6 C -0.160 4.160 7 C 0.172 3.828 8 H 0.015 0.985 9 N -0.367 5.367 10 C -0.589 4.589 11 H 0.056 0.944 12 C -0.178 4.178 13 N -0.557 5.557 14 Si 0.781 3.219 15 H -0.204 1.204 16 H -0.203 1.203 17 H -0.197 1.197 18 C -0.086 4.086 19 N -0.177 5.177 20 C -0.062 4.062 21 C -0.021 4.021 22 C -0.158 4.158 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.155 0.845 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.159 0.841 30 H 0.077 0.923 31 H 0.194 0.806 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.652 -10.553 1.260 17.301 hybrid contribution 1.265 1.160 -1.747 2.449 sum -12.387 -9.393 -0.486 15.553 Atomic orbital electron populations 1.20759 0.88185 1.03745 1.03068 1.19914 0.97513 0.91445 0.98791 1.20701 0.92657 0.98864 1.05458 1.20408 0.94847 0.96094 0.98974 1.19475 0.93306 0.93859 1.08172 1.20804 0.92826 0.94339 1.08020 1.16979 0.85405 0.88799 0.91656 0.98528 1.59417 1.08668 1.13804 1.54826 1.21978 1.15527 1.25916 0.95482 0.94420 1.25721 0.95624 0.95681 1.00769 1.69839 1.20271 1.33001 1.32635 0.85660 0.77544 0.78256 0.80438 1.20393 1.20300 1.19713 1.21524 0.87894 0.93094 1.06090 1.43908 1.03660 1.06459 1.63673 1.22144 1.04102 0.76137 1.03850 1.18529 0.91752 0.87378 1.04472 1.20075 0.88742 0.99272 1.07693 0.90326 0.90211 0.90627 0.84504 0.88378 0.87289 0.84116 0.92350 0.80591 0.90369 0.88680 0.88879 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 9.99 71.24 0.71 -1.14 16 2 C -0.08 -2.13 5.88 -19.84 -0.12 -2.25 16 3 C -0.16 -5.25 9.61 22.03 0.21 -5.04 16 4 C -0.08 -3.59 10.05 22.23 0.22 -3.36 16 5 C -0.14 -6.45 6.35 -20.20 -0.13 -6.57 16 6 C -0.15 -7.37 5.41 -18.63 -0.10 -7.47 16 7 C 0.28 15.41 3.23 43.42 0.14 15.55 16 8 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 9 N -0.84 -41.98 8.88 -174.97 -1.55 -43.53 16 10 C -0.55 -31.67 8.71 25.60 0.22 -31.45 16 11 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 12 C 0.02 1.22 5.38 84.65 0.46 1.68 16 13 N -0.92 -52.74 11.54 21.45 0.25 -52.49 16 14 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 C 0.04 1.49 10.54 83.00 0.87 2.37 16 19 N -0.49 -16.54 3.18 -539.25 -1.71 -18.25 16 20 C 0.08 1.60 11.03 127.77 1.41 3.01 16 21 C 0.09 3.19 6.81 39.03 0.27 3.46 16 22 C -0.14 -4.08 9.60 22.37 0.21 -3.86 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 24 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 25 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 26 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 27 H 0.10 4.45 8.06 -2.92 -0.02 4.43 16 28 H 0.32 14.66 8.00 -89.69 -0.72 13.94 16 29 H 0.34 18.45 7.08 -89.70 -0.63 17.81 16 30 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.18 6.22 7.31 -2.91 -0.02 6.20 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 1.54 8.10 -2.38 -0.02 1.52 16 35 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -68.38 296.48 3.14 -65.24 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: -0.25 Total: 37.42 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 4.38 Total: -35.07 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -3.02 Total: -114.28 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.38 3.14 -65.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259642847.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.203 kcal (2) G-P(sol) polarization free energy of solvation -68.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds