Wall clock time and date at job start Mon Mar 30 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38830 * 119.73634 * 2 1 4 4 C 1.37750 * 120.66683 * 179.97438 * 3 2 1 5 5 C 1.39128 * 119.78003 * 0.02562 * 4 3 2 6 6 C 1.40668 * 119.32983 * 359.97438 * 5 4 3 7 7 C 1.36623 * 119.73232 * 179.97438 * 2 1 3 8 8 C 1.46480 * 106.04253 * 180.02562 * 6 5 4 9 9 C 1.50698 * 126.50601 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46665 * 324.99766 * 9 8 6 11 11 N 1.46899 * 109.47365 * 204.99614 * 9 8 6 12 12 C 1.50706 * 109.47294 * 84.99385 * 9 8 6 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 9 8 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 9 8 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47288 * 59.99994 * 16 14 12 18 18 H 1.48503 * 109.47086 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46819 * 299.99648 * 16 14 12 20 20 C 1.34244 * 106.99606 * 0.24006 * 8 6 5 21 21 N 1.36829 * 109.92602 * 359.60938 * 20 8 6 22 22 C 1.46506 * 125.06069 * 180.17064 * 21 20 8 23 23 H 1.08996 * 109.47129 * 89.99948 * 1 2 3 24 24 H 1.08997 * 109.46738 * 210.00054 * 1 2 3 25 25 H 1.09002 * 109.46745 * 329.99928 * 1 2 3 26 26 H 1.07997 * 119.66658 * 0.02562 * 3 2 1 27 27 H 1.07994 * 120.10928 * 179.97438 * 4 3 2 28 28 H 1.07993 * 120.12404 * 0.02562 * 7 2 1 29 29 H 1.00903 * 110.99644 * 176.04275 * 11 9 8 30 30 H 1.00897 * 110.99782 * 299.99792 * 11 9 8 31 31 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 32 32 H 1.07999 * 125.03397 * 179.73072 * 20 8 6 33 33 H 1.09003 * 109.46918 * 270.27044 * 22 21 20 34 34 H 1.08993 * 109.47120 * 30.27394 * 22 21 20 35 35 H 1.09001 * 109.46950 * 150.27401 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2055 0.0000 4 6 3.5730 1.2279 0.0005 5 6 4.2835 0.0317 0.0005 6 6 3.5811 -1.1870 0.0005 7 6 2.1847 -1.1864 0.0005 8 6 4.5986 -2.2408 0.0012 9 6 4.3499 -3.7271 0.0019 10 1 3.4597 -3.9462 0.5915 11 7 5.5071 -4.4169 0.5876 12 6 4.1448 -4.2029 -1.4132 13 1 4.1905 -3.4994 -2.2314 14 6 3.8990 -5.5362 -1.6635 15 7 3.8430 -6.3929 -0.6671 16 14 3.6455 -6.1261 -3.4177 17 1 4.8589 -5.8283 -4.2203 18 1 3.4004 -7.5907 -3.4169 19 1 2.4763 -5.4283 -4.0104 20 6 5.7947 -1.6313 0.0069 21 7 5.6261 -0.2734 0.0012 22 6 6.7126 0.7095 0.0013 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6460 2.1351 0.0004 27 1 4.0995 2.1708 0.0001 28 1 1.6424 -2.1203 0.0005 29 1 5.3386 -5.4092 0.6587 30 1 6.3456 -4.2294 0.0586 31 1 3.6704 -7.3310 -0.8432 32 1 6.7485 -2.1377 0.0129 33 1 6.9816 0.9535 1.0291 34 1 7.5792 0.2932 -0.5121 35 1 6.3851 1.6131 -0.5128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259679478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:19 Heat of formation + Delta-G solvation = 51.015983 kcal Electronic energy + Delta-G solvation = -17234.058921 eV Core-core repulsion = 14617.902750 eV Total energy + Delta-G solvation = -2616.156171 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66767 -36.98190 -34.87600 -32.21859 -31.40471 -30.65966 -28.50122 -26.81897 -26.01847 -24.71484 -22.06254 -21.84648 -20.16321 -18.41852 -16.45862 -16.28251 -15.66709 -14.82013 -14.73973 -14.47295 -13.68683 -13.49134 -13.41498 -13.27608 -12.80639 -12.51585 -12.26009 -12.12091 -11.77685 -11.62187 -11.18814 -10.95976 -10.87640 -10.62342 -10.42073 -10.24228 -9.96630 -9.58699 -8.86573 -8.52667 -7.44150 -7.18971 -6.74344 -5.98166 -4.15553 1.74782 2.15325 3.28281 3.33065 3.35517 3.39880 3.56238 4.38029 4.51418 5.03290 5.16714 5.20517 5.37141 5.39078 5.47184 5.51300 5.58542 5.79635 5.95680 5.98522 6.06499 6.24843 6.33005 6.47149 6.60310 6.69074 6.94009 6.99482 7.24975 7.45048 7.46506 7.78339 7.83387 7.90208 8.07393 8.23250 8.78489 9.02907 9.19047 9.55469 10.97041 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.007883 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.508011 B = 3551.087545 C = 4369.824940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.136 4.136 3 C -0.105 4.105 4 C -0.139 4.139 5 C 0.090 3.910 6 C -0.095 4.095 7 C -0.051 4.051 8 C -0.099 4.099 9 C 0.272 3.728 10 H 0.045 0.955 11 N -0.850 5.850 12 C -0.535 4.535 13 H 0.053 0.947 14 C 0.064 3.936 15 N -0.897 5.897 16 Si 0.894 3.106 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.023 3.977 21 N -0.497 5.497 22 C 0.087 3.913 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.355 0.645 30 H 0.308 0.692 31 H 0.265 0.735 32 H 0.160 0.840 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 12.838 1.327 12.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.137 4.137 3 C -0.124 4.124 4 C -0.160 4.160 5 C -0.016 4.016 6 C -0.101 4.101 7 C -0.070 4.070 8 C -0.106 4.106 9 C 0.162 3.838 10 H 0.063 0.937 11 N -0.379 5.379 12 C -0.575 4.575 13 H 0.072 0.928 14 C -0.138 4.138 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.098 4.098 21 N -0.183 5.183 22 C -0.055 4.055 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.140 0.860 29 H 0.171 0.829 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.178 0.822 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.907 13.261 2.035 13.447 hybrid contribution 0.052 -0.823 -2.026 2.187 sum 0.959 12.438 0.009 12.475 Atomic orbital electron populations 1.20642 0.91862 1.01872 1.01524 1.19246 0.95508 0.92889 1.06107 1.20483 0.92791 0.96985 1.02128 1.19792 0.93656 0.94304 1.08214 1.18243 0.83372 0.95248 1.04741 1.19202 0.93137 0.92160 1.05575 1.20244 0.92208 0.97505 0.96995 1.20969 0.89856 0.96140 1.03602 1.17338 0.90887 0.82664 0.92914 0.93747 1.59485 1.05022 1.17657 1.55767 1.21832 1.48891 0.93090 0.93652 0.92848 1.25013 0.94731 0.96824 0.97183 1.69740 1.49988 1.03333 1.30574 0.86623 0.78778 0.77421 0.84970 1.20401 1.21268 1.20201 1.21387 0.99717 0.80456 1.08245 1.43646 1.03621 1.05839 1.65150 1.21739 0.89638 0.92144 1.02006 0.92092 0.91973 0.92472 0.86759 0.87349 0.85964 0.82880 0.88366 0.92556 0.82224 0.92197 0.90507 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 9.99 36.01 0.36 -1.00 16 2 C -0.14 -2.29 5.85 -104.98 -0.61 -2.90 16 3 C -0.10 -1.62 9.66 -39.54 -0.38 -2.00 16 4 C -0.14 -2.24 9.97 -39.43 -0.39 -2.64 16 5 C 0.09 1.72 6.81 -83.99 -0.57 1.15 16 6 C -0.09 -2.06 6.35 -105.14 -0.67 -2.73 16 7 C -0.05 -1.02 9.67 -39.64 -0.38 -1.41 16 8 C -0.10 -2.28 5.38 -102.71 -0.55 -2.83 16 9 C 0.27 6.99 3.23 -70.01 -0.23 6.76 16 10 H 0.04 1.27 8.14 -51.93 -0.42 0.84 16 11 N -0.85 -20.43 8.95 -6.65 -0.06 -20.49 16 12 C -0.53 -14.69 8.71 -34.44 -0.30 -14.99 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.75 5.38 -17.82 -0.10 1.66 16 15 N -0.90 -24.96 11.54 55.43 0.64 -24.32 16 16 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.02 0.46 10.57 -16.73 -0.18 0.28 16 21 N -0.50 -8.72 3.18 -121.80 -0.39 -9.11 16 22 C 0.09 1.05 11.03 59.85 0.66 1.71 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 25 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 26 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 29 H 0.36 9.12 7.08 -39.29 -0.28 8.84 16 30 H 0.31 6.92 7.96 -39.29 -0.31 6.61 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.16 2.87 7.31 -52.49 -0.38 2.48 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 296.51 15.07 4.47 4.47 Total: -1.00 -29.87 296.51 -8.44 -38.30 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -4.73 Total: 13.77 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -3.34 Total: -18.93 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.19 Total: -53.92 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.87 -8.44 -38.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259679478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.319 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds