Wall clock time and date at job start Mon Mar 30 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38830 * 119.73634 * 2 1 4 4 C 1.37750 * 120.66683 * 179.97438 * 3 2 1 5 5 C 1.39128 * 119.78003 * 0.02562 * 4 3 2 6 6 C 1.40668 * 119.32983 * 359.97438 * 5 4 3 7 7 C 1.36623 * 119.73232 * 179.97438 * 2 1 3 8 8 C 1.46480 * 106.04253 * 180.02562 * 6 5 4 9 9 C 1.50698 * 126.50601 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46665 * 324.99766 * 9 8 6 11 11 N 1.46899 * 109.47365 * 204.99614 * 9 8 6 12 12 C 1.50706 * 109.47294 * 84.99385 * 9 8 6 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 9 8 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 9 8 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47288 * 59.99994 * 16 14 12 18 18 H 1.48503 * 109.47086 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46819 * 299.99648 * 16 14 12 20 20 C 1.34244 * 106.99606 * 0.24006 * 8 6 5 21 21 N 1.36829 * 109.92602 * 359.60938 * 20 8 6 22 22 C 1.46506 * 125.06069 * 180.17064 * 21 20 8 23 23 H 1.08996 * 109.47129 * 89.99948 * 1 2 3 24 24 H 1.08997 * 109.46738 * 210.00054 * 1 2 3 25 25 H 1.09002 * 109.46745 * 329.99928 * 1 2 3 26 26 H 1.07997 * 119.66658 * 0.02562 * 3 2 1 27 27 H 1.07994 * 120.10928 * 179.97438 * 4 3 2 28 28 H 1.07993 * 120.12404 * 0.02562 * 7 2 1 29 29 H 1.00903 * 110.99644 * 176.04275 * 11 9 8 30 30 H 1.00897 * 110.99782 * 299.99792 * 11 9 8 31 31 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 32 32 H 1.07999 * 125.03397 * 179.73072 * 20 8 6 33 33 H 1.09003 * 109.46918 * 270.27044 * 22 21 20 34 34 H 1.08993 * 109.47120 * 30.27394 * 22 21 20 35 35 H 1.09001 * 109.46950 * 150.27401 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2055 0.0000 4 6 3.5730 1.2279 0.0005 5 6 4.2835 0.0317 0.0005 6 6 3.5811 -1.1870 0.0005 7 6 2.1847 -1.1864 0.0005 8 6 4.5986 -2.2408 0.0012 9 6 4.3499 -3.7271 0.0019 10 1 3.4597 -3.9462 0.5915 11 7 5.5071 -4.4169 0.5876 12 6 4.1448 -4.2029 -1.4132 13 1 4.1905 -3.4994 -2.2314 14 6 3.8990 -5.5362 -1.6635 15 7 3.8430 -6.3929 -0.6671 16 14 3.6455 -6.1261 -3.4177 17 1 4.8589 -5.8283 -4.2203 18 1 3.4004 -7.5907 -3.4169 19 1 2.4763 -5.4283 -4.0104 20 6 5.7947 -1.6313 0.0069 21 7 5.6261 -0.2734 0.0012 22 6 6.7126 0.7095 0.0013 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6460 2.1351 0.0004 27 1 4.0995 2.1708 0.0001 28 1 1.6424 -2.1203 0.0005 29 1 5.3386 -5.4092 0.6587 30 1 6.3456 -4.2294 0.0586 31 1 3.6704 -7.3310 -0.8432 32 1 6.7485 -2.1377 0.0129 33 1 6.9816 0.9535 1.0291 34 1 7.5792 0.2932 -0.5121 35 1 6.3851 1.6131 -0.5128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259679478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:18 Heat of formation + Delta-G solvation = 32.859980 kcal Electronic energy + Delta-G solvation = -17234.846224 eV Core-core repulsion = 14617.902750 eV Total energy + Delta-G solvation = -2616.943474 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07527 -38.31286 -36.77190 -33.93823 -32.68699 -32.38273 -29.84686 -28.39095 -27.69547 -26.18664 -23.69514 -23.34785 -21.49555 -19.99744 -18.52559 -17.80973 -17.03697 -16.56184 -16.05990 -15.98769 -15.41914 -14.84783 -14.73585 -14.70736 -14.38012 -14.21127 -13.50889 -13.32520 -13.06319 -13.01582 -12.88208 -12.75126 -12.69952 -12.21136 -12.02687 -11.83051 -11.60742 -11.38291 -10.72543 -10.25206 -9.19880 -8.83278 -8.33484 -7.97240 -6.33871 0.34975 0.79664 1.35761 1.37130 1.45476 2.00220 2.12032 2.39762 3.06434 3.07498 3.89594 4.05011 4.08796 4.18184 4.29274 4.48947 4.52898 4.61523 4.71539 4.74335 4.80929 4.92808 5.02640 5.03127 5.13400 5.22856 5.32808 5.54338 5.65962 5.73334 5.89456 6.03421 6.13393 6.15407 6.45635 6.64515 6.71533 6.97670 7.15340 7.42475 8.85200 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.007883 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.508011 B = 3551.087545 C = 4369.824940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.129 4.129 3 C -0.102 4.102 4 C -0.129 4.129 5 C 0.076 3.924 6 C -0.135 4.135 7 C -0.093 4.093 8 C -0.155 4.155 9 C 0.283 3.717 10 H -0.004 1.004 11 N -0.839 5.839 12 C -0.549 4.549 13 H 0.037 0.963 14 C 0.021 3.979 15 N -0.918 5.918 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.278 1.278 20 C 0.040 3.960 21 N -0.492 5.492 22 C 0.078 3.922 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.158 0.842 27 H 0.149 0.851 28 H 0.093 0.907 29 H 0.344 0.656 30 H 0.318 0.682 31 H 0.267 0.733 32 H 0.176 0.824 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 15.820 0.592 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.130 4.130 3 C -0.120 4.120 4 C -0.149 4.149 5 C -0.031 4.031 6 C -0.140 4.140 7 C -0.111 4.111 8 C -0.162 4.162 9 C 0.172 3.828 10 H 0.014 0.986 11 N -0.367 5.367 12 C -0.589 4.589 13 H 0.056 0.944 14 C -0.179 4.179 15 N -0.558 5.558 16 Si 0.782 3.218 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.084 4.084 21 N -0.177 5.177 22 C -0.062 4.062 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.176 0.824 27 H 0.166 0.834 28 H 0.112 0.888 29 H 0.159 0.841 30 H 0.127 0.873 31 H 0.076 0.924 32 H 0.193 0.807 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.439 16.284 1.304 16.399 hybrid contribution -0.127 -1.659 -1.751 2.415 sum 1.312 14.625 -0.447 14.691 Atomic orbital electron populations 1.20714 0.89489 1.03116 1.02509 1.19673 0.97356 0.92306 1.03682 1.20996 0.92930 0.97825 1.00287 1.20288 0.94066 0.94651 1.05935 1.18562 0.83931 0.95263 1.05323 1.19486 0.93901 0.93288 1.07362 1.20265 0.92248 0.97997 1.00630 1.20789 0.92216 0.94959 1.08222 1.16978 0.89487 0.85246 0.91110 0.98617 1.59427 1.05019 1.16617 1.55681 1.21980 1.49476 0.93236 0.94188 0.94418 1.25734 0.94340 0.96836 1.00979 1.69845 1.50143 1.03534 1.32238 0.85650 0.78623 0.77142 0.80416 1.19655 1.20307 1.20407 1.21510 0.99097 0.81942 1.05877 1.43898 1.04470 1.05647 1.63645 1.22144 0.88558 0.91685 1.03840 0.91105 0.92604 0.89385 0.82409 0.83363 0.88839 0.84138 0.87290 0.92351 0.80698 0.90389 0.88755 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.55 9.99 71.24 0.71 -1.83 16 2 C -0.13 -4.22 5.85 -20.10 -0.12 -4.34 16 3 C -0.10 -2.78 9.66 22.30 0.22 -2.57 16 4 C -0.13 -3.72 9.97 22.37 0.22 -3.50 16 5 C 0.08 2.80 6.81 39.03 0.27 3.07 16 6 C -0.13 -6.09 6.35 -20.20 -0.13 -6.21 16 7 C -0.09 -3.93 9.67 22.23 0.22 -3.72 16 8 C -0.15 -7.47 5.38 -18.63 -0.10 -7.57 16 9 C 0.28 15.47 3.23 43.42 0.14 15.61 16 10 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 11 N -0.84 -42.21 8.95 -174.95 -1.57 -43.78 16 12 C -0.55 -31.70 8.71 25.60 0.22 -31.48 16 13 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 14 C 0.02 1.17 5.38 84.65 0.46 1.62 16 15 N -0.92 -52.87 11.54 21.45 0.25 -52.62 16 16 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 C 0.04 1.58 10.57 83.00 0.88 2.46 16 21 N -0.49 -16.45 3.18 -539.26 -1.71 -18.17 16 22 C 0.08 1.59 11.03 127.77 1.41 3.00 16 23 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 1.45 8.07 -2.39 -0.02 1.43 16 25 H 0.09 1.66 8.08 -2.39 -0.02 1.65 16 26 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 27 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 28 H 0.09 4.29 8.06 -2.91 -0.02 4.27 16 29 H 0.34 18.51 7.08 -89.69 -0.64 17.88 16 30 H 0.32 14.70 7.96 -89.70 -0.71 13.99 16 31 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.18 6.20 7.31 -2.91 -0.02 6.17 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 Total: -1.00 -68.94 296.51 3.14 -65.81 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.25 Total: 37.50 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 4.39 Total: -35.46 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -3.03 Total: -114.56 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.94 3.14 -65.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259679478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.667 kcal (2) G-P(sol) polarization free energy of solvation -68.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds