Wall clock time and date at job start Mon Mar 30 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.46487 * 126.50472 * 2 1 4 4 C 1.39634 * 134.02908 * 0.04555 * 3 2 1 5 5 C 1.36624 * 119.76301 * 179.97438 * 4 3 2 6 6 C 1.50695 * 119.73606 * 180.02562 * 5 4 3 7 7 C 1.38835 * 120.52670 * 0.03030 * 5 4 3 8 8 C 1.37746 * 120.66830 * 359.97438 * 7 5 4 9 9 C 1.39127 * 119.77848 * 359.97438 * 8 7 5 10 10 N 1.37684 * 133.50367 * 180.38310 * 9 8 7 11 11 H 0.96998 * 125.06582 * 359.90176 * 10 9 8 12 12 C 1.34245 * 126.50239 * 180.02562 * 2 1 3 13 13 C 1.50700 * 125.03050 * 359.97438 * 12 2 1 14 14 H 1.09004 * 109.47107 * 40.00440 * 13 12 2 15 15 N 1.46904 * 109.46995 * 159.99773 * 13 12 2 16 16 C 1.50698 * 109.47276 * 279.99997 * 13 12 2 17 17 H 1.07997 * 119.99952 * 354.82201 * 16 13 12 18 18 C 1.37877 * 119.99994 * 174.82265 * 16 13 12 19 19 N 1.31515 * 119.99910 * 164.38857 * 18 16 13 20 20 Si 1.86806 * 120.00087 * 344.39320 * 18 16 13 21 21 H 1.48490 * 109.47138 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46845 * 300.00193 * 20 18 16 23 23 H 1.48502 * 109.46989 * 59.99852 * 20 18 16 24 24 H 1.09003 * 109.46851 * 269.97639 * 1 2 3 25 25 H 1.08995 * 109.47040 * 29.96968 * 1 2 3 26 26 H 1.09001 * 109.47201 * 149.97490 * 1 2 3 27 27 H 1.07993 * 120.11734 * 359.97438 * 4 3 2 28 28 H 1.08999 * 109.47526 * 270.01383 * 6 5 4 29 29 H 1.09004 * 109.47043 * 30.01617 * 6 5 4 30 30 H 1.08999 * 109.47266 * 150.01582 * 6 5 4 31 31 H 1.08002 * 119.66545 * 179.97438 * 7 5 4 32 32 H 1.07999 * 120.11042 * 179.97438 * 8 7 5 33 33 H 1.00904 * 110.99471 * 54.09933 * 15 13 12 34 34 H 1.00901 * 110.99943 * 178.04817 * 15 13 12 35 35 H 0.96993 * 120.00200 * 354.84494 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3784 1.1775 0.0000 4 6 2.1488 2.5548 0.0008 5 6 3.2071 3.4188 0.0011 6 6 2.9585 4.9052 0.0025 7 6 4.5097 2.9385 -0.0001 8 6 4.7589 1.5837 -0.0010 9 6 3.6963 0.6857 -0.0002 10 7 3.6170 -0.6889 0.0059 11 1 4.3775 -1.2909 0.0098 12 6 2.3055 -1.0791 -0.0005 13 6 1.8282 -2.5085 -0.0006 14 1 0.9662 -2.6037 -0.6609 15 7 2.9074 -3.3851 -0.4749 16 6 1.4356 -2.9071 1.3987 17 1 1.6009 -2.2263 2.2206 18 6 0.8653 -4.1410 1.6296 19 7 0.8037 -4.6182 2.8536 20 14 0.1803 -5.1350 0.2040 21 1 -0.3728 -6.4152 0.7138 22 1 -0.8960 -4.3621 -0.4663 23 1 1.2660 -5.4179 -0.7689 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5133 26 1 -0.3633 -0.8898 -0.5142 27 1 1.1382 2.9357 0.0012 28 1 2.8979 5.2645 -1.0248 29 1 2.0212 5.1163 0.5172 30 1 3.7768 5.4099 0.5161 31 1 5.3359 3.6340 -0.0003 32 1 5.7758 1.2199 -0.0023 33 1 3.7499 -3.2445 0.0623 34 1 2.6226 -4.3529 -0.4541 35 1 1.2251 -4.1378 3.5832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259690588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:09 Heat of formation + Delta-G solvation = 37.511173 kcal Electronic energy + Delta-G solvation = -17193.885087 eV Core-core repulsion = 14577.143303 eV Total energy + Delta-G solvation = -2616.741783 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.82202 -37.29658 -34.68881 -32.52954 -31.91368 -30.93048 -29.38423 -26.71957 -25.73216 -25.36938 -22.81313 -20.96702 -20.11477 -18.36878 -17.84403 -17.22868 -15.50358 -15.27873 -14.48762 -14.30967 -13.84628 -13.59085 -13.47692 -13.27219 -12.78598 -12.48714 -12.15525 -12.12321 -12.03560 -11.76172 -11.73019 -11.35581 -10.85521 -10.70788 -10.45728 -10.20172 -10.16883 -9.44293 -9.04803 -8.63959 -7.86598 -7.51128 -7.00171 -6.54580 -4.35740 1.58200 2.00084 3.20607 3.30834 3.39064 3.45946 3.71377 4.26546 4.28374 5.01675 5.06339 5.15456 5.30447 5.46348 5.56893 5.70553 5.73673 5.78281 5.85581 6.00454 6.09502 6.23564 6.32190 6.40665 6.45176 6.58703 6.68381 6.71570 6.91990 7.05345 7.28122 7.42497 7.61589 7.72922 8.03899 8.17177 8.21240 8.25682 8.70016 9.36369 10.69943 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.039638 B = 0.006069 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.219077 B = 4612.763697 C = 4871.979929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.203 4.203 3 C -0.088 4.088 4 C -0.077 4.077 5 C -0.126 4.126 6 C -0.103 4.103 7 C -0.115 4.115 8 C -0.126 4.126 9 C 0.083 3.917 10 N -0.585 5.585 11 H 0.411 0.589 12 C 0.155 3.845 13 C 0.232 3.768 14 H 0.061 0.939 15 N -0.861 5.861 16 C -0.625 4.625 17 H 0.060 0.940 18 C 0.036 3.964 19 N -0.893 5.893 20 Si 1.040 2.960 21 H -0.282 1.282 22 H -0.278 1.278 23 H -0.273 1.273 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.318 0.682 34 H 0.338 0.662 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.553 11.436 -6.479 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.209 4.209 3 C -0.093 4.093 4 C -0.095 4.095 5 C -0.127 4.127 6 C -0.160 4.160 7 C -0.134 4.134 8 C -0.147 4.147 9 C -0.024 4.024 10 N -0.187 5.187 11 H 0.248 0.752 12 C 0.046 3.954 13 C 0.122 3.878 14 H 0.079 0.921 15 N -0.392 5.392 16 C -0.664 4.664 17 H 0.078 0.922 18 C -0.172 4.172 19 N -0.526 5.526 20 Si 0.868 3.132 21 H -0.208 1.208 22 H -0.204 1.204 23 H -0.199 1.199 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.133 0.867 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.154 0.846 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.722 10.316 -7.531 13.304 hybrid contribution 1.262 0.700 1.550 2.118 sum 4.984 11.017 -5.981 13.490 Atomic orbital electron populations 1.19913 0.89923 1.00769 1.01288 1.19817 0.95098 0.89622 1.16397 1.19119 0.92160 0.93022 1.05029 1.20022 0.98177 0.90856 1.00457 1.19221 0.93035 0.95306 1.05136 1.20651 1.01729 0.92092 1.01496 1.20478 0.95952 0.93904 1.03048 1.19916 0.96174 0.92159 1.06409 1.18243 0.95476 0.83614 1.05106 1.41678 1.07772 1.04353 1.64857 0.75190 1.20569 0.81569 0.96458 0.96799 1.18157 0.90505 0.82841 0.96255 0.92149 1.59866 1.07758 1.11180 1.60411 1.22518 1.47536 1.03702 0.92691 0.92219 1.25829 0.94316 0.95609 1.01402 1.70821 1.41478 1.39707 1.00592 0.84061 0.77459 0.76832 0.74883 1.20770 1.20425 1.19934 0.92353 0.93327 0.92043 0.86749 0.92040 0.92139 0.92248 0.86579 0.86891 0.87144 0.84605 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.17 36.00 0.37 -0.79 16 2 C -0.20 -4.25 6.31 -102.71 -0.65 -4.90 16 3 C -0.09 -1.71 6.35 -105.14 -0.67 -2.38 16 4 C -0.08 -1.27 9.67 -39.64 -0.38 -1.66 16 5 C -0.13 -1.83 5.85 -104.99 -0.61 -2.44 16 6 C -0.10 -1.12 9.99 36.00 0.36 -0.76 16 7 C -0.11 -1.64 9.66 -39.54 -0.38 -2.02 16 8 C -0.13 -1.97 10.08 -39.43 -0.40 -2.37 16 9 C 0.08 1.55 7.28 -83.99 -0.61 0.94 16 10 N -0.58 -11.18 5.88 -6.95 -0.04 -11.22 16 11 H 0.41 6.93 7.80 -40.82 -0.32 6.61 16 12 C 0.16 3.36 6.00 -81.77 -0.49 2.87 16 13 C 0.23 5.31 2.33 -70.02 -0.16 5.15 16 14 H 0.06 1.41 6.11 -51.93 -0.32 1.10 16 15 N -0.86 -17.81 9.12 -6.65 -0.06 -17.87 16 16 C -0.62 -16.55 9.05 -34.44 -0.31 -16.86 16 17 H 0.06 1.78 7.99 -52.49 -0.42 1.36 16 18 C 0.04 0.96 5.38 -17.82 -0.10 0.87 16 19 N -0.89 -26.07 13.70 55.43 0.76 -25.31 16 20 Si 1.04 23.33 26.42 -169.99 -4.49 18.84 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.55 5.69 56.52 0.32 -5.23 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.16 7.28 -51.93 -0.38 0.78 16 27 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.32 6.17 7.81 -39.29 -0.31 5.87 16 34 H 0.34 7.12 5.49 -39.29 -0.22 6.90 16 35 H 0.27 7.97 8.73 -40.82 -0.36 7.62 16 LS Contribution 289.10 15.07 4.36 4.36 Total: -1.00 -29.35 289.10 -8.08 -37.43 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -4.56 Total: 18.13 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -4.04 Total: -24.36 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.66 Total: -54.40 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.49 Total: 18.84 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.35 -8.08 -37.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259690588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.939 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds