Wall clock time and date at job start Mon Mar 30 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33407 * 126.27254 * 2 1 4 4 C 1.30897 * 109.86924 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.30945 * 180.02562 * 4 3 2 6 6 N 1.35034 * 109.37572 * 0.02562 * 4 3 2 7 7 C 1.37066 * 133.11735 * 180.02562 * 6 4 3 8 8 C 1.34669 * 120.55741 * 180.02562 * 7 6 4 9 9 C 1.40816 * 120.61528 * 359.97375 * 8 7 6 10 10 C 1.50697 * 120.11263 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47491 * 89.99578 * 10 9 8 12 12 C 1.50702 * 109.47159 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.35880 * 119.77616 * 0.25174 * 9 8 7 21 21 C 1.37997 * 126.26729 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.47060 * 270.02529 * 1 2 3 23 23 H 1.09001 * 109.46925 * 30.02425 * 1 2 3 24 24 H 1.08995 * 109.47201 * 150.02287 * 1 2 3 25 25 H 1.08998 * 109.47188 * 269.97778 * 5 4 3 26 26 H 1.08999 * 109.47357 * 29.98029 * 5 4 3 27 27 H 1.09002 * 109.46912 * 149.97733 * 5 4 3 28 28 H 1.08004 * 119.71872 * 359.97438 * 7 6 4 29 29 H 1.07997 * 119.69153 * 180.02562 * 8 7 6 30 30 H 1.09004 * 109.46801 * 329.99617 * 10 9 8 31 31 H 1.09000 * 109.47461 * 210.00149 * 10 9 8 32 32 H 1.09004 * 109.47066 * 60.00201 * 11 10 9 33 33 H 1.08994 * 109.47405 * 300.00031 * 11 10 9 34 34 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 35 35 H 1.07996 * 120.41035 * 179.74608 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2962 1.0755 0.0000 4 6 3.5519 0.7059 0.0006 5 6 4.7348 1.6397 0.0013 6 7 3.6219 -0.6426 0.0004 7 6 4.6697 -1.5263 0.0012 8 6 4.4454 -2.8542 0.0002 9 6 3.1310 -3.3595 -0.0011 10 6 2.8931 -4.8475 -0.0028 11 6 2.8118 -5.3527 1.4391 12 6 2.5732 -6.8407 1.4373 13 1 2.4885 -7.3730 0.5014 14 6 2.4693 -7.5237 2.6306 15 7 2.2665 -8.8231 2.6291 16 14 2.6164 -6.6032 4.2494 17 1 1.2721 -6.1435 4.6814 18 1 3.1864 -7.5057 5.2819 19 1 3.5078 -5.4289 4.0719 20 6 2.0780 -2.5008 -0.0066 21 6 2.3233 -1.1126 0.0005 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 5.0208 1.8647 -1.0262 26 1 4.4683 2.5634 0.5148 27 1 5.5711 1.1663 0.5158 28 1 5.6837 -1.1545 0.0018 29 1 5.2814 -3.5379 0.0013 30 1 3.7149 -5.3463 -0.5167 31 1 1.9572 -5.0653 -0.5174 32 1 1.9900 -4.8540 1.9530 33 1 3.7476 -5.1351 1.9537 34 1 2.1931 -9.3035 3.4686 35 1 1.0657 -2.8771 -0.0118 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259716325.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:15 Heat of formation + Delta-G solvation = 43.433162 kcal Electronic energy + Delta-G solvation = -16777.708864 eV Core-core repulsion = 14161.223877 eV Total energy + Delta-G solvation = -2616.484987 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.77467 -38.98707 -36.12892 -34.96924 -33.63460 -31.79336 -31.18146 -30.12820 -27.92452 -25.35954 -24.49103 -22.82870 -21.88419 -21.24898 -19.00968 -18.19737 -17.46344 -17.09955 -16.36996 -16.07806 -15.75926 -14.91453 -14.72077 -14.65763 -14.12687 -14.03035 -13.97074 -13.60467 -13.39359 -13.28613 -12.96882 -12.93701 -12.68434 -12.31828 -11.94616 -11.84483 -11.66607 -11.36104 -11.21477 -11.07859 -10.77769 -10.15718 -8.30687 -8.20076 -6.34280 -0.10740 0.29240 1.34229 1.35293 1.46651 1.68514 1.98466 2.33960 2.44507 3.05239 3.41402 3.53463 3.76857 3.79247 3.90260 4.22165 4.35401 4.44777 4.55036 4.67567 4.70261 4.72394 4.82418 4.83992 4.94688 4.97084 5.05077 5.08761 5.17730 5.32884 5.41758 5.57041 5.64011 5.68107 5.75279 6.26681 6.29798 6.73931 6.91716 7.30595 8.86077 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030697 B = 0.005278 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.928173 B = 5303.683892 C = 5508.988837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.023 4.023 3 N -0.483 5.483 4 C 0.151 3.849 5 C -0.058 4.058 6 N -0.373 5.373 7 C 0.045 3.955 8 C -0.129 4.129 9 C -0.080 4.080 10 C -0.056 4.056 11 C 0.000 4.000 12 C -0.531 4.531 13 H 0.038 0.962 14 C 0.009 3.991 15 N -0.949 5.949 16 Si 0.944 3.056 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.250 1.250 20 C -0.096 4.096 21 C -0.012 4.012 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.206 0.794 29 H 0.169 0.831 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.012 0.988 33 H 0.020 0.980 34 H 0.266 0.734 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 20.021 -5.137 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.157 4.157 3 N -0.199 5.199 4 C -0.104 4.104 5 C -0.117 4.117 6 N -0.045 5.045 7 C -0.073 4.073 8 C -0.150 4.150 9 C -0.083 4.083 10 C -0.093 4.093 11 C -0.038 4.038 12 C -0.569 4.569 13 H 0.057 0.943 14 C -0.188 4.188 15 N -0.590 5.590 16 Si 0.768 3.232 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.174 1.174 20 C -0.116 4.116 21 C -0.121 4.121 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.222 0.778 29 H 0.187 0.813 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.030 0.970 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.325 20.797 -5.036 22.051 hybrid contribution -0.013 -1.289 0.753 1.492 sum 5.312 19.509 -4.283 20.668 Atomic orbital electron populations 1.20041 0.85467 1.03409 1.02797 1.21377 0.97482 0.86458 1.10408 1.69804 1.00593 1.30871 1.18650 1.23939 0.96034 0.80191 1.10212 1.20313 0.90266 0.96400 1.04687 1.42914 1.06971 1.07654 1.46989 1.22164 0.92931 0.88920 1.03307 1.21120 0.97903 0.94530 1.01446 1.20105 0.93399 0.96436 0.98351 1.20370 1.02193 0.88983 0.97798 1.19451 0.96411 0.93787 0.94130 1.21483 1.48813 0.93290 0.93281 0.94338 1.25916 0.94252 0.95449 1.03171 1.70052 1.51590 1.09181 1.28162 0.85751 0.79408 0.79165 0.78888 1.19514 1.20806 1.17359 1.20451 1.00728 0.88545 1.01847 1.19598 0.84865 0.95074 1.12515 0.90899 0.90494 0.90243 0.88842 0.88710 0.88717 0.77766 0.81340 0.90904 0.91748 0.96981 0.96146 0.92463 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.42 10.44 71.23 0.74 -0.68 16 2 C -0.02 -0.70 7.21 42.26 0.30 -0.39 16 3 N -0.48 -14.95 11.19 -174.15 -1.95 -16.90 16 4 C 0.15 3.94 7.96 138.02 1.10 5.04 16 5 C -0.06 -0.87 10.33 71.24 0.74 -0.14 16 6 N -0.37 -10.26 2.94 -337.91 -0.99 -11.25 16 7 C 0.05 1.00 10.80 83.06 0.90 1.90 16 8 C -0.13 -3.29 9.66 22.08 0.21 -3.08 16 9 C -0.08 -2.53 5.14 -19.78 -0.10 -2.63 16 10 C -0.06 -2.07 5.29 29.85 0.16 -1.91 16 11 C 0.00 -0.02 4.02 29.85 0.12 0.10 16 12 C -0.53 -29.94 9.66 25.60 0.25 -29.69 16 13 H 0.04 2.37 7.99 -2.91 -0.02 2.34 16 14 C 0.01 0.53 5.47 84.66 0.46 1.00 16 15 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 16 Si 0.94 44.18 27.47 68.60 1.88 46.06 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 19 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 20 C -0.10 -3.03 9.74 22.39 0.22 -2.81 16 21 C -0.01 -0.37 6.74 38.77 0.26 -0.11 16 22 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 23 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.09 0.96 8.04 -2.39 -0.02 0.94 16 28 H 0.21 2.48 7.98 -2.91 -0.02 2.46 16 29 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 30 H 0.07 2.59 8.10 -2.38 -0.02 2.57 16 31 H 0.06 2.39 8.08 -2.39 -0.02 2.37 16 32 H 0.01 0.54 7.58 -2.38 -0.02 0.53 16 33 H 0.02 0.91 7.19 -2.39 -0.02 0.89 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -71.97 298.87 5.61 -66.36 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.01 Total: 7.81 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 5.36 Total: -33.42 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -2.65 Total: -86.82 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -71.97 5.61 -66.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259716325.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.795 kcal (2) G-P(sol) polarization free energy of solvation -71.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds