Wall clock time and date at job start Mon Mar 30 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.66642 * 2 1 4 4 C 1.54711 * 110.74967 * 123.21562 * 2 1 3 5 5 C 1.51645 * 101.90654 * 93.14954 * 4 2 1 6 6 C 1.37741 * 132.17882 * 195.69358 * 5 4 2 7 7 C 1.38344 * 119.97687 * 179.63821 * 6 5 4 8 8 C 1.50700 * 120.11669 * 179.97438 * 7 6 5 9 9 C 1.50704 * 115.54943 * 40.40065 * 8 7 6 10 10 H 1.07997 * 120.00564 * 267.28413 * 9 8 7 11 11 C 1.37880 * 119.99932 * 87.28247 * 9 8 7 12 12 N 1.31509 * 120.00131 * 174.01673 * 11 9 8 13 13 Si 1.86799 * 119.99854 * 354.01801 * 11 9 8 14 14 H 1.48504 * 109.47401 * 85.11114 * 13 11 9 15 15 H 1.48504 * 109.47296 * 205.10941 * 13 11 9 16 16 H 1.48505 * 109.47427 * 325.10800 * 13 11 9 17 17 C 1.53002 * 117.50223 * 254.69620 * 8 7 6 18 18 C 1.52997 * 117.50189 * 186.07111 * 8 7 6 19 19 C 1.38285 * 119.76992 * 359.97438 * 7 6 5 20 20 C 1.37929 * 120.34912 * 0.19146 * 19 7 6 21 21 C 1.38885 * 107.02778 * 15.69694 * 5 4 2 22 22 O 1.36124 * 111.25661 * 0.60886 * 21 5 4 23 23 H 1.08994 * 109.46811 * 296.78302 * 1 2 3 24 24 H 1.08998 * 109.46975 * 56.78821 * 1 2 3 25 25 H 1.09002 * 109.46595 * 176.78812 * 1 2 3 26 26 H 1.08998 * 110.94247 * 211.30399 * 4 2 1 27 27 H 1.09002 * 110.94240 * 334.99463 * 4 2 1 28 28 H 1.08003 * 120.00573 * 359.60471 * 6 5 4 29 29 H 0.97008 * 120.00209 * 180.02562 * 12 11 9 30 30 H 1.08992 * 117.49553 * 0.02562 * 17 8 7 31 31 H 1.08997 * 117.49899 * 145.02042 * 17 8 7 32 32 H 1.09002 * 117.50091 * 214.98212 * 18 8 7 33 33 H 1.08998 * 117.49772 * 359.97438 * 18 8 7 34 34 H 1.07995 * 119.82805 * 180.17331 * 19 7 6 35 35 H 1.07995 * 119.88053 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0781 -0.7925 1.2104 5 6 2.2652 -2.1765 0.6194 6 6 2.4517 -3.4121 1.1988 7 6 2.5903 -4.5350 0.4028 8 6 2.7951 -5.8884 1.0333 9 6 1.9727 -6.1621 2.2662 10 1 2.3782 -5.9490 3.2442 11 6 0.7025 -6.6848 2.1455 12 7 0.0302 -7.0337 3.2205 13 14 -0.0632 -6.8974 0.4550 14 1 0.3691 -8.1945 -0.1247 15 1 -1.5432 -6.8781 0.5759 16 1 0.3756 -5.7888 -0.4303 17 6 4.2003 -6.4906 0.9730 18 6 3.0831 -7.0662 0.1004 19 6 2.5403 -4.4114 -0.9736 20 6 2.3570 -3.1746 -1.5560 21 6 2.2212 -2.0382 -0.7619 22 8 2.0429 -0.7377 -1.1222 23 1 -0.3633 0.4631 0.9174 24 1 -0.3633 0.5629 -0.8598 25 1 -0.3632 -1.0261 -0.0576 26 1 3.0295 -0.3808 1.5471 27 1 1.3534 -0.8111 2.0244 28 1 2.4903 -3.5041 2.2742 29 1 -0.8634 -7.4017 3.1356 30 1 4.9767 -5.9078 0.4775 31 1 4.5302 -7.0849 1.8250 32 1 2.6781 -8.0393 0.3784 33 1 3.1240 -6.8624 -0.9696 34 1 2.6455 -5.2877 -1.5959 35 1 2.3194 -3.0867 -2.6317 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259855316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:21 Heat of formation + Delta-G solvation = 15.376817 kcal Electronic energy + Delta-G solvation = -17553.041051 eV Core-core repulsion = 14903.046698 eV Total energy + Delta-G solvation = -2649.994352 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81031 -38.14025 -35.47030 -32.83515 -32.12764 -30.39836 -29.33130 -26.48629 -25.76654 -22.57564 -22.06261 -21.26266 -20.91211 -18.96202 -16.83201 -16.56611 -16.15858 -15.48566 -15.10213 -14.45696 -13.73629 -13.61309 -13.22325 -12.88326 -12.73118 -12.58449 -12.38482 -12.12812 -11.94866 -11.64174 -11.16480 -11.09170 -11.07425 -10.51633 -10.37373 -10.27438 -9.95063 -9.68878 -9.25129 -8.65998 -8.61716 -8.24880 -7.27617 -6.13887 -4.17733 1.87570 2.01206 3.31600 3.40568 3.50707 3.56386 4.25407 4.44607 4.65135 4.83111 4.96390 5.03481 5.16505 5.27667 5.37119 5.47371 5.63019 5.73127 5.80943 5.86156 5.87783 6.06739 6.12388 6.16894 6.19889 6.27544 6.46180 6.47762 6.72231 6.73002 6.94348 7.09830 7.13809 7.18952 7.43367 7.73516 7.76054 8.45830 8.87476 9.49982 10.97066 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.025266 B = 0.008263 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.940347 B = 3387.755537 C = 3687.367586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.077 3.923 3 H 0.108 0.892 4 C -0.103 4.103 5 C -0.178 4.178 6 C -0.045 4.045 7 C -0.039 4.039 8 C 0.033 3.967 9 C -0.487 4.487 10 H 0.079 0.921 11 C 0.083 3.917 12 N -0.896 5.896 13 Si 0.869 3.131 14 H -0.276 1.276 15 H -0.296 1.296 16 H -0.249 1.249 17 C -0.170 4.170 18 C -0.201 4.201 19 C -0.101 4.101 20 C -0.142 4.142 21 C 0.076 3.924 22 O -0.308 6.308 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.265 0.735 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.204 10.738 -6.728 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.021 3.979 3 H 0.126 0.874 4 C -0.140 4.140 5 C -0.178 4.178 6 C -0.063 4.063 7 C -0.040 4.040 8 C 0.032 3.968 9 C -0.524 4.524 10 H 0.097 0.903 11 C -0.120 4.120 12 N -0.532 5.532 13 Si 0.696 3.304 14 H -0.201 1.201 15 H -0.222 1.222 16 H -0.173 1.173 17 C -0.207 4.207 18 C -0.238 4.238 19 C -0.119 4.119 20 C -0.161 4.161 21 C 0.032 3.968 22 O -0.224 6.224 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.148 0.852 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.141 0.859 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.054 10.780 -6.857 13.136 hybrid contribution -0.696 -0.236 -0.722 1.030 sum 2.358 10.545 -7.579 13.198 Atomic orbital electron populations 1.22235 0.94649 1.03453 1.02479 1.23309 0.94450 0.95972 0.84150 0.87426 1.21788 1.02090 0.92019 0.98136 1.20671 1.08406 0.95155 0.93601 1.20183 0.96331 0.89126 1.00695 1.19721 0.97105 0.95329 0.91813 1.18167 0.95750 0.86527 0.96307 1.20179 0.98770 1.42788 0.90635 0.90299 1.24924 0.96680 0.93847 0.96521 1.69892 1.12546 1.42047 1.28738 0.86947 0.77676 0.79959 0.85773 1.20147 1.22245 1.17300 1.22845 0.91653 1.04312 1.01881 1.23065 1.05269 0.99901 0.95579 1.20850 1.00006 0.95816 0.95186 1.20064 1.07659 0.89591 0.98776 1.19392 1.00027 0.84432 0.92996 1.86783 1.80448 1.17355 1.37768 0.90914 0.91817 0.91605 0.89707 0.89288 0.85219 0.92506 0.90811 0.89254 0.89156 0.90633 0.85900 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.52 37.16 0.35 -1.68 16 2 C 0.08 1.00 4.31 -25.83 -0.11 0.89 16 3 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.10 -1.45 6.65 -26.52 -0.18 -1.62 16 5 C -0.18 -3.23 6.26 -104.10 -0.65 -3.89 16 6 C -0.05 -0.93 9.33 -39.72 -0.37 -1.30 16 7 C -0.04 -0.84 4.50 -104.57 -0.47 -1.31 16 8 C 0.03 0.76 1.23 -156.81 -0.19 0.57 16 9 C -0.49 -13.18 8.61 -34.44 -0.30 -13.48 16 10 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 11 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 12 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 13 Si 0.87 21.55 25.38 -169.99 -4.31 17.24 16 14 H -0.28 -6.65 7.08 56.52 0.40 -6.25 16 15 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 16 H -0.25 -5.97 5.53 56.52 0.31 -5.65 16 17 C -0.17 -3.41 9.94 -26.73 -0.27 -3.68 16 18 C -0.20 -4.21 7.38 -26.73 -0.20 -4.40 16 19 C -0.10 -1.96 8.37 -39.68 -0.33 -2.30 16 20 C -0.14 -2.59 10.06 -39.30 -0.40 -2.99 16 21 C 0.08 1.38 6.93 -38.95 -0.27 1.11 16 22 O -0.31 -5.12 10.82 -20.14 -0.22 -5.33 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.09 1.15 7.92 -51.93 -0.41 0.74 16 28 H 0.13 2.71 7.68 -52.48 -0.40 2.31 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 32 H 0.09 1.99 7.47 -51.93 -0.39 1.60 16 33 H 0.08 1.41 6.13 -51.93 -0.32 1.09 16 34 H 0.12 2.22 5.98 -52.49 -0.31 1.91 16 35 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 284.98 15.07 4.29 4.29 Total: -1.00 -30.04 284.98 -7.80 -37.84 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.86 Total: 3.79 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -3.48 Total: -31.82 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.77 Total: -26.02 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.22 Total: -5.33 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.31 Total: 17.24 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.04 -7.80 -37.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.215 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds