Wall clock time and date at job start Mon Mar 30 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.66620 * 2 1 4 4 C 1.54707 * 110.90690 * 236.67298 * 2 1 3 5 5 C 1.51642 * 101.94381 * 266.83355 * 4 2 1 6 6 C 1.37743 * 132.17164 * 164.39678 * 5 4 2 7 7 C 1.38352 * 119.97831 * 180.89957 * 6 5 4 8 8 C 1.50697 * 120.11548 * 179.97438 * 7 6 5 9 9 C 1.50701 * 115.55189 * 303.65699 * 8 7 6 10 10 H 1.07998 * 119.99737 * 91.21075 * 9 8 7 11 11 C 1.37874 * 120.00017 * 271.21292 * 9 8 7 12 12 N 1.31520 * 119.99808 * 174.00897 * 11 9 8 13 13 Si 1.86803 * 120.00313 * 354.00287 * 11 9 8 14 14 H 1.48502 * 109.47234 * 272.44593 * 13 11 9 15 15 H 1.48502 * 109.46694 * 32.44147 * 13 11 9 16 16 H 1.48493 * 109.47221 * 152.44447 * 13 11 9 17 17 C 1.52998 * 117.51933 * 89.36240 * 8 7 6 18 18 C 1.53001 * 117.49748 * 157.99214 * 8 7 6 19 19 C 1.38292 * 119.76779 * 0.26986 * 7 6 5 20 20 C 1.37932 * 120.34691 * 359.25878 * 19 7 6 21 21 C 1.38886 * 107.04205 * 344.86044 * 5 4 2 22 22 O 1.36132 * 111.22264 * 358.56340 * 21 5 4 23 23 H 1.09003 * 109.47342 * 298.22751 * 1 2 3 24 24 H 1.09003 * 109.47529 * 58.22942 * 1 2 3 25 25 H 1.09007 * 109.46914 * 178.22939 * 1 2 3 26 26 H 1.08997 * 110.93697 * 148.67117 * 4 2 1 27 27 H 1.09001 * 110.93904 * 24.99385 * 4 2 1 28 28 H 1.07999 * 120.01422 * 0.92005 * 6 5 4 29 29 H 0.96994 * 119.99579 * 179.97438 * 12 11 9 30 30 H 1.08997 * 117.50069 * 214.97060 * 17 8 7 31 31 H 1.09004 * 117.49562 * 359.97438 * 17 8 7 32 32 H 1.09008 * 117.50092 * 359.97210 * 18 8 7 33 33 H 1.08997 * 117.50343 * 144.99881 * 18 8 7 34 34 H 1.08001 * 119.82867 * 179.51534 * 19 7 6 35 35 H 1.08005 * 119.88428 * 180.25954 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0821 -0.7940 -1.2075 5 6 2.2706 -2.1768 -0.6142 6 6 2.4623 -3.4125 -1.1916 7 6 2.5898 -4.5359 -0.3941 8 6 2.7990 -5.8895 -1.0226 9 6 1.7492 -6.3136 -2.0171 10 1 1.8755 -6.0866 -3.0654 11 6 0.6276 -6.9915 -1.5888 12 7 -0.3430 -7.2580 -2.4353 13 14 0.4866 -7.5316 0.1939 14 1 1.1156 -8.8668 0.3579 15 1 1.1787 -6.5481 1.0652 16 1 -0.9463 -7.6091 0.5758 17 6 4.2399 -6.3324 -1.2842 18 6 3.4334 -6.9799 -0.1568 19 6 2.5186 -4.4131 0.9815 20 6 2.3364 -3.1752 1.5621 21 6 2.2109 -2.0388 0.7665 22 8 2.0394 -0.7367 1.1247 23 1 -0.3634 0.4861 0.9055 24 1 -0.3634 0.5411 -0.8737 25 1 -0.3633 -1.0273 -0.0318 26 1 3.0334 -0.3812 -1.5431 27 1 1.3591 -0.8155 -2.0230 28 1 2.5132 -3.5046 -2.2665 29 1 -1.1318 -7.7352 -2.1340 30 1 4.4286 -6.9304 -2.1757 31 1 5.0370 -5.6444 -1.0022 32 1 3.6998 -6.7180 0.8673 33 1 3.0915 -8.0040 -0.3066 34 1 2.6102 -5.2904 1.6046 35 1 2.2861 -3.0874 2.6374 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259855321.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:23 Heat of formation + Delta-G solvation = 15.529374 kcal Electronic energy + Delta-G solvation = -17513.675931 eV Core-core repulsion = 14863.688194 eV Total energy + Delta-G solvation = -2649.987737 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.80706 -38.11599 -35.50092 -32.82528 -32.11712 -30.41118 -29.30939 -26.49220 -25.76181 -22.57845 -22.18376 -21.26440 -20.87909 -18.98272 -16.79874 -16.58092 -16.16758 -15.49085 -15.07331 -14.53819 -13.75573 -13.61246 -13.24072 -12.94098 -12.71768 -12.63735 -12.31429 -12.14003 -11.91909 -11.65279 -11.19351 -11.10063 -10.99605 -10.50820 -10.39116 -10.33685 -9.99644 -9.58372 -9.25403 -8.68828 -8.49001 -8.25182 -7.32543 -6.13951 -4.17504 1.88488 2.01452 3.30326 3.40906 3.44897 3.58283 4.27770 4.43561 4.64916 4.80464 4.94614 5.00070 5.17778 5.27619 5.37325 5.48854 5.64273 5.73425 5.79817 5.86996 5.93667 6.04552 6.09744 6.17631 6.19833 6.25569 6.45554 6.49232 6.69617 6.71724 6.93165 7.07159 7.13629 7.22513 7.42262 7.71061 7.75511 8.45319 8.87353 9.49383 10.97053 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.026435 B = 0.007815 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.929463 B = 3581.821982 C = 3776.328101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.077 3.923 3 H 0.108 0.892 4 C -0.103 4.103 5 C -0.176 4.176 6 C -0.049 4.049 7 C -0.036 4.036 8 C 0.037 3.963 9 C -0.486 4.486 10 H 0.079 0.921 11 C 0.080 3.920 12 N -0.895 5.895 13 Si 0.875 3.125 14 H -0.280 1.280 15 H -0.247 1.247 16 H -0.298 1.298 17 C -0.173 4.173 18 C -0.203 4.203 19 C -0.098 4.098 20 C -0.141 4.141 21 C 0.075 3.925 22 O -0.309 6.309 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.265 0.735 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 11.172 5.199 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.021 3.979 3 H 0.125 0.875 4 C -0.140 4.140 5 C -0.177 4.177 6 C -0.068 4.068 7 C -0.037 4.037 8 C 0.036 3.964 9 C -0.523 4.523 10 H 0.097 0.903 11 C -0.123 4.123 12 N -0.531 5.531 13 Si 0.703 3.297 14 H -0.206 1.206 15 H -0.170 1.170 16 H -0.225 1.225 17 C -0.210 4.210 18 C -0.240 4.240 19 C -0.116 4.116 20 C -0.160 4.160 21 C 0.031 3.969 22 O -0.224 6.224 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.142 0.858 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.144 0.856 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.310 11.205 5.374 13.153 hybrid contribution -0.380 -0.436 0.768 0.961 sum 3.930 10.769 6.142 13.005 Atomic orbital electron populations 1.22237 0.94616 1.03520 1.02489 1.23314 0.94495 0.95972 0.84095 0.87453 1.21774 1.02002 0.92042 0.98171 1.20641 1.08309 0.95090 0.93678 1.20092 0.97076 0.89332 1.00251 1.19677 0.97014 0.94999 0.91980 1.18135 0.93002 0.87892 0.97396 1.20198 1.02166 1.36416 0.93503 0.90284 1.24979 0.94832 0.94924 0.97535 1.69901 1.07438 1.40368 1.35417 0.86927 0.76526 0.79855 0.86342 1.20586 1.17042 1.22490 1.22878 0.94838 1.03607 0.99663 1.23025 1.07047 0.99216 0.94700 1.20908 0.99730 0.95783 0.95146 1.20095 1.07484 0.89580 0.98835 1.19379 1.00073 0.84434 0.92987 1.86802 1.80641 1.17179 1.37741 0.91745 0.90966 0.91534 0.89761 0.89317 0.85752 0.92508 0.89306 0.90851 0.90554 0.89308 0.85604 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.51 37.16 0.35 -1.68 16 2 C 0.08 1.00 4.30 -25.83 -0.11 0.89 16 3 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.10 -1.42 6.66 -26.52 -0.18 -1.59 16 5 C -0.18 -3.18 6.27 -104.10 -0.65 -3.83 16 6 C -0.05 -1.00 9.49 -39.72 -0.38 -1.38 16 7 C -0.04 -0.77 5.14 -104.56 -0.54 -1.31 16 8 C 0.04 0.84 1.12 -156.81 -0.18 0.66 16 9 C -0.49 -13.25 9.21 -34.44 -0.32 -13.57 16 10 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 11 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 12 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 13 Si 0.88 21.43 24.91 -169.99 -4.23 17.19 16 14 H -0.28 -6.70 7.04 56.52 0.40 -6.30 16 15 H -0.25 -5.60 4.32 56.52 0.24 -5.36 16 16 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 17 C -0.17 -3.47 9.94 -26.73 -0.27 -3.73 16 18 C -0.20 -4.24 6.79 -26.73 -0.18 -4.42 16 19 C -0.10 -1.94 8.24 -39.67 -0.33 -2.27 16 20 C -0.14 -2.59 10.06 -39.30 -0.40 -2.99 16 21 C 0.08 1.38 6.94 -38.95 -0.27 1.11 16 22 O -0.31 -5.11 10.82 -20.16 -0.22 -5.32 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.95 8.13 -51.92 -0.42 0.53 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.09 1.13 7.92 -51.93 -0.41 0.71 16 28 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.44 6.68 -51.92 -0.35 1.09 16 33 H 0.09 1.94 6.57 -51.93 -0.34 1.60 16 34 H 0.13 2.39 5.45 -52.49 -0.29 2.11 16 35 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 283.38 15.07 4.27 4.27 Total: -1.00 -30.10 283.38 -7.85 -37.95 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.91 Total: 3.98 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: -3.53 Total: -31.93 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.77 Total: -26.14 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.22 Total: -5.32 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.23 Total: 17.19 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.10 -7.85 -37.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855321.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.481 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds