Wall clock time and date at job start Mon Mar 30 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.66620 * 2 1 4 4 C 1.54707 * 110.90690 * 236.67298 * 2 1 3 5 5 C 1.51642 * 101.94381 * 266.83355 * 4 2 1 6 6 C 1.37743 * 132.17164 * 164.39678 * 5 4 2 7 7 C 1.38352 * 119.97831 * 180.89957 * 6 5 4 8 8 C 1.50697 * 120.11548 * 179.97438 * 7 6 5 9 9 C 1.50701 * 115.55189 * 303.65699 * 8 7 6 10 10 H 1.07998 * 119.99737 * 91.21075 * 9 8 7 11 11 C 1.37874 * 120.00017 * 271.21292 * 9 8 7 12 12 N 1.31520 * 119.99808 * 174.00897 * 11 9 8 13 13 Si 1.86803 * 120.00313 * 354.00287 * 11 9 8 14 14 H 1.48502 * 109.47234 * 272.44593 * 13 11 9 15 15 H 1.48502 * 109.46694 * 32.44147 * 13 11 9 16 16 H 1.48493 * 109.47221 * 152.44447 * 13 11 9 17 17 C 1.52998 * 117.51933 * 89.36240 * 8 7 6 18 18 C 1.53001 * 117.49748 * 157.99214 * 8 7 6 19 19 C 1.38292 * 119.76779 * 0.26986 * 7 6 5 20 20 C 1.37932 * 120.34691 * 359.25878 * 19 7 6 21 21 C 1.38886 * 107.04205 * 344.86044 * 5 4 2 22 22 O 1.36132 * 111.22264 * 358.56340 * 21 5 4 23 23 H 1.09003 * 109.47342 * 298.22751 * 1 2 3 24 24 H 1.09003 * 109.47529 * 58.22942 * 1 2 3 25 25 H 1.09007 * 109.46914 * 178.22939 * 1 2 3 26 26 H 1.08997 * 110.93697 * 148.67117 * 4 2 1 27 27 H 1.09001 * 110.93904 * 24.99385 * 4 2 1 28 28 H 1.07999 * 120.01422 * 0.92005 * 6 5 4 29 29 H 0.96994 * 119.99579 * 179.97438 * 12 11 9 30 30 H 1.08997 * 117.50069 * 214.97060 * 17 8 7 31 31 H 1.09004 * 117.49562 * 359.97438 * 17 8 7 32 32 H 1.09008 * 117.50092 * 359.97210 * 18 8 7 33 33 H 1.08997 * 117.50343 * 144.99881 * 18 8 7 34 34 H 1.08001 * 119.82867 * 179.51534 * 19 7 6 35 35 H 1.08005 * 119.88428 * 180.25954 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0821 -0.7940 -1.2075 5 6 2.2706 -2.1768 -0.6142 6 6 2.4623 -3.4125 -1.1916 7 6 2.5898 -4.5359 -0.3941 8 6 2.7990 -5.8895 -1.0226 9 6 1.7492 -6.3136 -2.0171 10 1 1.8755 -6.0866 -3.0654 11 6 0.6276 -6.9915 -1.5888 12 7 -0.3430 -7.2580 -2.4353 13 14 0.4866 -7.5316 0.1939 14 1 1.1156 -8.8668 0.3579 15 1 1.1787 -6.5481 1.0652 16 1 -0.9463 -7.6091 0.5758 17 6 4.2399 -6.3324 -1.2842 18 6 3.4334 -6.9799 -0.1568 19 6 2.5186 -4.4131 0.9815 20 6 2.3364 -3.1752 1.5621 21 6 2.2109 -2.0388 0.7665 22 8 2.0394 -0.7367 1.1247 23 1 -0.3634 0.4861 0.9055 24 1 -0.3634 0.5411 -0.8737 25 1 -0.3633 -1.0273 -0.0318 26 1 3.0334 -0.3812 -1.5431 27 1 1.3591 -0.8155 -2.0230 28 1 2.5132 -3.5046 -2.2665 29 1 -1.1318 -7.7352 -2.1340 30 1 4.4286 -6.9304 -2.1757 31 1 5.0370 -5.6444 -1.0022 32 1 3.6998 -6.7180 0.8673 33 1 3.0915 -8.0040 -0.3066 34 1 2.6102 -5.2904 1.6046 35 1 2.2861 -3.0874 2.6374 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259855321.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:22 Heat of formation + Delta-G solvation = -1.759023 kcal Electronic energy + Delta-G solvation = -17514.425612 eV Core-core repulsion = 14863.688194 eV Total energy + Delta-G solvation = -2650.737418 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.09181 -39.66499 -37.04739 -34.25513 -33.99677 -31.65237 -30.76369 -27.82576 -27.65960 -24.03947 -23.76553 -22.42784 -22.38445 -20.69564 -18.56162 -18.09180 -17.38504 -16.93310 -16.69840 -16.25404 -15.07803 -14.94919 -14.76584 -14.59286 -14.46142 -14.03330 -13.57634 -13.34465 -13.12995 -13.11749 -12.98458 -12.78435 -12.26597 -12.00804 -11.90173 -11.82602 -11.63155 -11.42994 -11.03480 -10.63989 -10.33219 -9.70302 -8.78495 -8.30942 -6.37989 0.43860 0.53433 1.35689 1.40563 1.52860 2.34601 2.40051 2.82082 3.05306 3.26278 3.55104 3.68215 3.99182 4.01051 4.11309 4.27223 4.30292 4.38733 4.43559 4.55446 4.67408 4.69866 4.81106 4.85371 4.93072 4.93925 5.02148 5.10335 5.23690 5.28015 5.45455 5.48782 5.54858 5.70762 5.77487 5.90061 6.29846 6.36011 6.69691 7.32233 8.83690 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.026435 B = 0.007815 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.929463 B = 3581.821982 C = 3776.328101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.075 3.925 3 H 0.146 0.854 4 C -0.103 4.103 5 C -0.181 4.181 6 C -0.071 4.071 7 C -0.057 4.057 8 C 0.012 3.988 9 C -0.483 4.483 10 H 0.034 0.966 11 C 0.023 3.977 12 N -0.947 5.947 13 Si 0.931 3.069 14 H -0.268 1.268 15 H -0.217 1.217 16 H -0.307 1.307 17 C -0.159 4.159 18 C -0.194 4.194 19 C -0.104 4.104 20 C -0.143 4.143 21 C 0.073 3.927 22 O -0.315 6.315 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.035 0.965 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.265 0.735 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.137 0.863 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 13.088 7.554 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.019 3.981 3 H 0.164 0.836 4 C -0.140 4.140 5 C -0.181 4.181 6 C -0.089 4.089 7 C -0.058 4.058 8 C 0.011 3.989 9 C -0.520 4.520 10 H 0.052 0.948 11 C -0.175 4.175 12 N -0.587 5.587 13 Si 0.756 3.244 14 H -0.194 1.194 15 H -0.139 1.139 16 H -0.235 1.235 17 C -0.196 4.196 18 C -0.230 4.230 19 C -0.122 4.122 20 C -0.161 4.161 21 C 0.029 3.971 22 O -0.230 6.230 23 H 0.094 0.906 24 H 0.115 0.885 25 H 0.054 0.946 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.128 0.872 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.154 0.846 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.399 13.138 7.729 16.171 hybrid contribution -0.681 -0.891 -0.085 1.125 sum 4.718 12.247 7.645 15.189 Atomic orbital electron populations 1.22260 0.94050 1.02079 1.04324 1.23692 0.95038 0.97063 0.82264 0.83617 1.21937 1.03483 0.89717 0.98845 1.21000 1.06705 0.96023 0.94405 1.20101 0.98679 0.90506 0.99645 1.19557 0.99033 0.94207 0.93007 1.17970 0.93212 0.89601 0.98090 1.20365 1.03419 1.35500 0.92755 0.94761 1.25824 0.94477 0.95257 1.01917 1.70052 1.08436 1.42429 1.37736 0.86039 0.76180 0.80504 0.81655 1.19395 1.13949 1.23528 1.22908 0.94028 1.03284 0.99374 1.23070 1.05965 0.97810 0.96185 1.20986 1.00033 0.96881 0.94329 1.20368 1.06410 0.89123 1.00231 1.19587 0.99208 0.85359 0.92991 1.86802 1.80658 1.16282 1.39302 0.90632 0.88460 0.94575 0.87686 0.88481 0.87226 0.92666 0.89876 0.88293 0.87668 0.90381 0.84576 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 9.51 71.98 0.68 -2.87 16 2 C 0.07 1.66 4.30 31.18 0.13 1.79 16 3 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.10 -2.58 6.66 30.73 0.20 -2.37 16 5 C -0.18 -6.26 6.27 -19.53 -0.12 -6.38 16 6 C -0.07 -2.88 9.49 22.18 0.21 -2.67 16 7 C -0.06 -2.42 5.14 -19.83 -0.10 -2.52 16 8 C 0.01 0.55 1.12 -53.68 -0.06 0.49 16 9 C -0.48 -27.35 9.21 25.60 0.24 -27.12 16 10 H 0.03 2.17 8.06 -2.91 -0.02 2.14 16 11 C 0.02 1.34 5.47 84.65 0.46 1.80 16 12 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 13 Si 0.93 44.25 24.91 68.60 1.71 45.96 16 14 H -0.27 -12.18 7.04 99.48 0.70 -11.48 16 15 H -0.22 -9.17 4.32 99.48 0.43 -8.74 16 16 H -0.31 -15.00 7.11 99.48 0.71 -14.29 16 17 C -0.16 -6.20 9.94 30.59 0.30 -5.89 16 18 C -0.19 -7.68 6.79 30.59 0.21 -7.47 16 19 C -0.10 -3.90 8.24 22.21 0.18 -3.72 16 20 C -0.14 -4.85 10.06 22.45 0.23 -4.63 16 21 C 0.07 2.50 6.94 22.68 0.16 2.66 16 22 O -0.32 -9.42 10.82 -95.05 -1.03 -10.45 16 23 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.03 0.97 8.13 -2.38 -0.02 0.95 16 26 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 27 H 0.10 2.27 7.92 -2.39 -0.02 2.25 16 28 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 29 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 32 H 0.11 3.57 6.68 -2.38 -0.02 3.55 16 33 H 0.08 3.27 6.57 -2.39 -0.02 3.25 16 34 H 0.14 4.69 5.45 -2.91 -0.02 4.67 16 35 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -67.46 283.38 4.50 -62.96 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.79 Total: 19.65 kcal Atomic # 6 Polarization: -61.64 SS G_CDS: 2.73 Total: -58.91 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.30 Total: -59.21 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -1.03 Total: -10.45 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.71 Total: 45.96 kcal Total: -67.46 4.50 -62.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855321.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.202 kcal (2) G-P(sol) polarization free energy of solvation -67.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds