Wall clock time and date at job start Mon Mar 30 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08999 * 109.30553 * 60.11407 * 9 7 2 11 11 C 1.52813 * 109.30600 * 179.71940 * 9 7 2 12 12 C 1.53318 * 108.49849 * 171.32516 * 11 9 7 13 13 C 1.52833 * 108.47528 * 290.16937 * 12 11 9 14 14 C 1.50334 * 110.45014 * 50.78622 * 13 12 11 15 15 C 1.39022 * 118.73448 * 162.71793 * 14 13 12 16 16 N 1.32182 * 119.27653 * 179.80660 * 15 14 13 17 17 C 1.31820 * 120.64384 * 359.96928 * 16 15 14 18 18 C 1.50701 * 119.16516 * 180.08411 * 17 16 15 19 19 C 1.53003 * 117.49981 * 8.62273 * 18 17 16 20 20 C 1.52995 * 59.99925 * 252.50972 * 19 18 17 21 21 N 1.31601 * 121.66739 * 0.10844 * 17 16 15 22 22 C 1.32889 * 121.06218 * 359.97438 * 21 17 16 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.62873 * 291.02921 * 11 9 7 25 25 H 1.09000 * 109.63143 * 51.42738 * 11 9 7 26 26 H 1.09002 * 109.63205 * 49.86410 * 12 11 9 27 27 H 1.08998 * 109.63543 * 170.26643 * 12 11 9 28 28 H 1.09001 * 109.30273 * 171.09283 * 13 12 11 29 29 H 1.08998 * 109.30559 * 290.48277 * 13 12 11 30 30 H 1.08005 * 120.35896 * 359.82622 * 15 14 13 31 31 H 1.09000 * 115.54825 * 154.33435 * 18 17 16 32 32 H 1.09005 * 117.49801 * 0.02562 * 19 18 17 33 33 H 1.08994 * 117.49684 * 145.01978 * 19 18 17 34 34 H 1.09002 * 117.50039 * 252.50582 * 20 19 18 35 35 H 1.09005 * 117.49961 * 107.49227 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6307 -2.5532 -0.9000 11 6 2.2472 -3.6579 -0.0105 12 6 1.4745 -4.9648 0.2029 13 6 0.9581 -4.9928 1.6411 14 6 0.2332 -3.7159 1.9638 15 6 -0.6100 -3.6870 3.0688 16 7 -1.2497 -2.5688 3.3646 17 6 -1.0935 -1.4894 2.6243 18 6 -1.8376 -0.2318 2.9932 19 6 -2.5823 -0.2179 4.3296 20 6 -3.3660 -0.2969 3.0180 21 7 -0.3046 -1.4822 1.5710 22 6 0.3693 -2.5697 1.2116 23 1 -0.4850 0.8401 -0.0004 24 1 2.7653 -3.6910 -0.9689 25 1 2.9713 -3.5218 0.7928 26 1 0.6337 -5.0103 -0.4892 27 1 2.1363 -5.8138 0.0315 28 1 0.2768 -5.8349 1.7629 29 1 1.7993 -5.1122 2.3238 30 1 -0.7407 -4.5686 3.6789 31 1 -1.3788 0.7000 2.6625 32 1 -2.5337 -1.1182 4.9423 33 1 -2.6135 0.7232 4.8786 34 1 -3.9128 0.5923 2.7040 35 1 -3.8334 -1.2492 2.7675 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259893591.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:54 Heat of formation + Delta-G solvation = 70.185488 kcal Electronic energy + Delta-G solvation = -17889.600290 eV Core-core repulsion = 15274.275371 eV Total energy + Delta-G solvation = -2615.324919 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.88763 -38.61618 -37.04707 -35.36829 -33.52247 -31.90155 -30.81800 -26.88299 -25.45498 -25.02638 -23.21230 -22.91104 -22.26411 -20.10257 -18.45826 -18.33476 -17.25261 -16.45427 -16.06570 -15.74817 -15.19438 -15.10227 -14.67337 -14.52307 -14.12272 -13.69604 -13.21990 -12.96752 -12.83402 -12.71639 -12.42977 -12.33344 -11.96785 -11.77996 -11.68290 -11.50977 -11.45815 -11.30566 -10.71434 -10.55462 -10.31631 -9.50630 -9.23223 -7.75721 -5.93731 0.33367 0.68186 1.41715 1.42348 1.48223 2.50155 2.83867 3.22128 3.33939 3.46672 3.63911 3.98997 4.04555 4.04987 4.14764 4.24221 4.27847 4.32442 4.59139 4.74630 4.79596 4.86449 4.92202 4.96394 5.02684 5.03263 5.21331 5.27211 5.30265 5.34869 5.48126 5.53175 5.70843 5.85537 6.09756 6.36192 6.61462 6.95864 7.62505 7.85742 9.11859 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.013535 C = 0.007630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.154681 B = 2068.162901 C = 3668.958080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.036 3.964 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.572 4.572 8 H 0.046 0.954 9 C 0.084 3.916 10 H 0.008 0.992 11 C -0.101 4.101 12 C -0.114 4.114 13 C -0.057 4.057 14 C -0.221 4.221 15 C 0.122 3.878 16 N -0.547 5.547 17 C 0.278 3.722 18 C -0.110 4.110 19 C -0.138 4.138 20 C -0.146 4.146 21 N -0.425 5.425 22 C 0.176 3.824 23 H 0.248 0.752 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.194 0.806 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.817 -7.106 5.828 9.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.172 4.172 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.610 4.610 8 H 0.064 0.936 9 C 0.065 3.935 10 H 0.026 0.974 11 C -0.139 4.139 12 C -0.151 4.151 13 C -0.094 4.094 14 C -0.225 4.225 15 C -0.046 4.046 16 N -0.262 5.262 17 C 0.011 3.989 18 C -0.130 4.130 19 C -0.175 4.175 20 C -0.184 4.184 21 N -0.137 5.137 22 C 0.031 3.969 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.210 0.790 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.497 -6.123 6.028 9.276 hybrid contribution 0.936 0.611 -0.491 1.220 sum -2.561 -5.512 5.537 8.222 Atomic orbital electron populations 1.70382 1.06130 1.24978 1.42748 1.25463 0.95361 1.00988 0.95416 0.86024 0.78726 0.81008 0.78079 1.19839 1.21028 1.21195 1.20981 0.92132 0.91103 1.56750 0.93574 1.17615 0.91799 0.95033 0.89027 0.97415 1.21514 0.97391 0.94039 1.00927 1.21586 0.99859 0.97593 0.96108 1.20270 0.99490 0.92299 0.97388 1.21655 1.02659 0.98762 0.99471 1.23544 0.90757 0.96334 0.93981 1.67913 1.25661 1.00712 1.31917 1.22957 0.94189 0.93213 0.88492 1.20425 0.94443 0.93482 1.04675 1.23009 1.00699 1.04307 0.89502 1.22906 0.90772 1.03359 1.01412 1.69841 1.04429 1.28296 1.11133 1.22929 0.90626 0.87219 0.96082 0.94204 0.92007 0.93155 0.92971 0.88669 0.88312 0.89647 0.78952 0.88168 0.88000 0.86402 0.86612 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.93 9.84 21.45 0.21 -46.72 16 2 C 0.04 2.01 4.92 84.66 0.42 2.43 16 3 Si 0.93 45.14 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 7 C -0.57 -32.34 8.51 25.60 0.22 -32.12 16 8 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 9 C 0.08 4.28 2.33 -12.43 -0.03 4.25 16 10 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 11 C -0.10 -3.97 5.19 30.64 0.16 -3.81 16 12 C -0.11 -3.45 5.98 30.65 0.18 -3.26 16 13 C -0.06 -1.62 5.72 29.68 0.17 -1.45 16 14 C -0.22 -8.70 5.73 -19.90 -0.11 -8.81 16 15 C 0.12 4.41 10.94 84.83 0.93 5.34 16 16 N -0.55 -22.62 9.36 -187.72 -1.76 -24.37 16 17 C 0.28 13.02 7.31 138.80 1.01 14.03 16 18 C -0.11 -4.42 6.24 -11.54 -0.07 -4.49 16 19 C -0.14 -4.18 10.01 30.59 0.31 -3.87 16 20 C -0.15 -4.68 10.23 30.59 0.31 -4.37 16 21 N -0.43 -22.60 5.69 -176.64 -1.00 -23.61 16 22 C 0.18 8.74 6.17 42.21 0.26 9.00 16 23 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 26 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.19 4.99 8.06 -2.91 -0.02 4.97 16 31 H 0.10 4.34 8.14 -2.39 -0.02 4.32 16 32 H 0.10 3.16 7.54 -2.38 -0.02 3.14 16 33 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 Total: -1.00 -67.25 286.12 4.30 -62.94 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.07 Total: 11.74 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.75 Total: -27.15 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -2.55 Total: -94.69 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -67.25 4.30 -62.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259893591.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.130 kcal (2) G-P(sol) polarization free energy of solvation -67.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds