Wall clock time and date at job start Mon Mar 30 2020 05:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34455 * 124.91737 * 2 1 4 4 C 1.34811 * 110.88735 * 179.97438 * 3 2 1 5 5 C 1.38945 * 133.49988 * 179.97438 * 4 3 2 6 6 C 1.37843 * 119.81971 * 180.02562 * 5 4 3 7 7 C 1.38746 * 120.68341 * 0.03337 * 6 5 4 8 8 C 1.50704 * 119.78696 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47331 * 269.98102 * 8 7 6 10 10 C 1.50695 * 109.47335 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99637 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00171 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99970 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 120.00195 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46932 * 59.99689 * 14 12 10 16 16 H 1.48497 * 109.47148 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46855 * 300.00135 * 14 12 10 18 18 C 1.36731 * 120.42263 * 359.97438 * 7 6 5 19 19 C 1.39410 * 119.71327 * 0.02562 * 18 7 6 20 20 C 1.33996 * 124.92588 * 179.97438 * 2 1 3 21 21 C 1.50693 * 126.90760 * 0.02562 * 20 2 1 22 22 H 1.08996 * 109.47711 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46892 * 120.02611 * 1 2 3 24 24 H 1.09009 * 109.46951 * 240.02389 * 1 2 3 25 25 H 1.08003 * 120.08713 * 0.02562 * 5 4 3 26 26 H 1.08003 * 119.65765 * 180.02562 * 6 5 4 27 27 H 1.08997 * 109.47251 * 29.98318 * 8 7 6 28 28 H 1.08996 * 109.46977 * 149.98003 * 8 7 6 29 29 H 1.08997 * 109.47130 * 300.00291 * 9 8 7 30 30 H 1.09008 * 109.46797 * 59.99956 * 9 8 7 31 31 H 0.96999 * 119.99636 * 180.02562 * 13 12 10 32 32 H 1.08002 * 120.14449 * 180.02562 * 18 7 6 33 33 H 1.09006 * 109.46941 * 90.01975 * 21 20 2 34 34 H 1.08993 * 109.47410 * 210.02016 * 21 20 2 35 35 H 1.08998 * 109.47153 * 330.02696 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2766 1.1025 0.0000 4 6 3.5845 0.7757 0.0006 5 6 4.7568 1.5216 0.0004 6 6 5.9771 0.8806 0.0006 7 6 6.0491 -0.5049 0.0003 8 6 7.3941 -1.1848 0.0011 9 6 7.8501 -1.4149 -1.4411 10 6 9.1953 -2.0942 -1.4402 11 1 9.6767 -2.3377 -0.5046 12 6 9.8116 -2.4046 -2.6338 13 7 9.2252 -2.1085 -3.7732 14 14 11.4788 -3.2473 -2.6328 15 1 11.3731 -4.5529 -1.9333 16 1 11.9215 -3.4705 -4.0326 17 1 12.4669 -2.3887 -1.9316 18 6 4.9075 -1.2575 0.0004 19 6 3.6642 -0.6270 0.0001 20 6 2.2742 -1.0986 0.0005 21 6 1.8043 -2.5304 0.0006 22 1 -0.3634 1.0276 -0.0005 23 1 -0.3633 -0.5142 -0.8897 24 1 -0.3633 -0.5135 0.8903 25 1 4.7118 2.6007 0.0000 26 1 6.8866 1.4630 0.0008 27 1 8.1195 -0.5544 0.5154 28 1 7.3166 -2.1429 0.5150 29 1 7.1247 -2.0453 -1.9553 30 1 7.9276 -0.4567 -1.9549 31 1 9.6586 -2.3273 -4.6129 32 1 4.9688 -2.3358 0.0006 33 1 1.6918 -2.8760 -1.0271 34 1 2.5362 -3.1530 0.5151 35 1 0.8450 -2.5980 0.5137 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260024603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:46 Heat of formation + Delta-G solvation = -1.182201 kcal Electronic energy + Delta-G solvation = -16575.693766 eV Core-core repulsion = 13924.981361 eV Total energy + Delta-G solvation = -2650.712405 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.23190 -38.01991 -34.28063 -33.81689 -31.93099 -30.90268 -29.29390 -28.15248 -25.99442 -24.96193 -22.29156 -21.53515 -20.13929 -19.78040 -16.72132 -16.48785 -16.13638 -15.99807 -14.84484 -14.46291 -13.86834 -13.64388 -13.39244 -13.23280 -12.99605 -12.82121 -12.56024 -12.41321 -12.28646 -11.89438 -11.77644 -11.45712 -10.91808 -10.79435 -10.61100 -10.51242 -9.82050 -9.57232 -9.54378 -9.10706 -8.34105 -7.92963 -7.75659 -5.98759 -4.02171 1.20529 1.76197 2.48972 2.89924 3.33914 3.38397 3.40687 4.09022 4.46645 4.53095 4.86378 4.96202 5.11388 5.25573 5.26520 5.36603 5.39823 5.54113 5.66100 5.69493 5.75666 5.80058 5.88214 5.94485 6.19985 6.36859 6.54904 6.61044 6.66215 6.74323 6.91162 7.10767 7.12952 7.47948 7.68662 7.82668 8.01045 8.41221 9.04766 9.61867 11.12199 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.039149 B = 0.004500 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.044617 B = 6221.110070 C = 6552.631051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.013 3.987 3 O -0.198 6.198 4 C 0.036 3.964 5 C -0.111 4.111 6 C -0.087 4.087 7 C -0.072 4.072 8 C -0.077 4.077 9 C 0.029 3.971 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.075 4.075 19 C -0.122 4.122 20 C -0.177 4.177 21 C -0.079 4.079 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.876 3.677 8.247 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 O -0.100 6.100 4 C -0.011 4.011 5 C -0.129 4.129 6 C -0.105 4.105 7 C -0.072 4.072 8 C -0.114 4.114 9 C -0.008 4.008 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.093 4.093 19 C -0.123 4.123 20 C -0.178 4.178 21 C -0.136 4.136 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.144 0.856 26 H 0.152 0.848 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.950 3.929 8.050 18.293 hybrid contribution 1.026 -0.502 -0.225 1.165 sum -14.923 3.427 7.824 17.195 Atomic orbital electron populations 1.20335 0.85276 1.03909 1.03464 1.21956 0.93589 0.83652 1.04195 1.83880 1.15268 1.33660 1.77224 1.19499 0.82787 0.93611 1.05169 1.19846 0.88059 0.99224 1.05785 1.20920 0.96320 0.94388 0.98898 1.19992 0.96546 0.93411 0.97222 1.20818 0.90240 0.98564 1.01794 1.19085 0.95810 0.97137 0.88766 1.21220 1.03713 1.38914 0.92326 0.92619 1.25021 0.97773 0.95917 0.95642 1.69967 1.38564 1.47531 0.97278 0.86657 0.84317 0.80080 0.76939 1.20234 1.21297 1.20214 1.20159 0.89494 0.99943 0.99717 1.19763 0.93517 0.92910 1.06129 1.20832 0.91080 0.96101 1.09780 1.20128 1.00781 0.90501 1.02155 0.90587 0.89647 0.89709 0.85587 0.84780 0.92049 0.92179 0.96451 0.96387 0.92930 0.85791 0.91309 0.91334 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 9.86 36.01 0.35 -0.26 16 2 C 0.01 0.18 7.23 -35.80 -0.26 -0.08 16 3 O -0.20 -3.17 10.58 3.89 0.04 -3.12 16 4 C 0.04 0.62 7.42 -38.47 -0.29 0.33 16 5 C -0.11 -1.78 10.07 -39.46 -0.40 -2.18 16 6 C -0.09 -1.49 9.66 -39.54 -0.38 -1.87 16 7 C -0.07 -1.36 5.10 -104.98 -0.54 -1.89 16 8 C -0.08 -1.60 5.27 -27.88 -0.15 -1.75 16 9 C 0.03 0.76 4.95 -27.88 -0.14 0.62 16 10 C -0.52 -14.83 9.11 -34.45 -0.31 -15.14 16 11 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 14 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 C -0.08 -1.37 9.68 -39.69 -0.38 -1.75 16 19 C -0.12 -2.14 6.38 -105.16 -0.67 -2.81 16 20 C -0.18 -2.58 6.35 -102.67 -0.65 -3.24 16 21 C -0.08 -0.88 10.18 36.00 0.37 -0.52 16 22 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 26 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 27 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 28 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.12 2.14 8.06 -52.49 -0.42 1.71 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.55 7.85 -51.93 -0.41 0.14 16 LS Contribution 302.68 15.07 4.56 4.56 Total: -1.00 -32.09 302.68 -8.24 -40.33 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -5.02 Total: -3.05 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -3.54 Total: -28.97 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.74 Total: -26.39 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.09 -8.24 -40.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260024603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.149 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds