Wall clock time and date at job start Mon Mar 30 2020 05:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34455 * 124.91737 * 2 1 4 4 C 1.34811 * 110.88735 * 179.97438 * 3 2 1 5 5 C 1.38945 * 133.49988 * 179.97438 * 4 3 2 6 6 C 1.37843 * 119.81971 * 180.02562 * 5 4 3 7 7 C 1.38746 * 120.68341 * 0.03337 * 6 5 4 8 8 C 1.50704 * 119.78696 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47331 * 269.98102 * 8 7 6 10 10 C 1.50695 * 109.47335 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99637 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00171 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99970 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 120.00195 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46932 * 59.99689 * 14 12 10 16 16 H 1.48497 * 109.47148 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46855 * 300.00135 * 14 12 10 18 18 C 1.36731 * 120.42263 * 359.97438 * 7 6 5 19 19 C 1.39410 * 119.71327 * 0.02562 * 18 7 6 20 20 C 1.33996 * 124.92588 * 179.97438 * 2 1 3 21 21 C 1.50693 * 126.90760 * 0.02562 * 20 2 1 22 22 H 1.08996 * 109.47711 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46892 * 120.02611 * 1 2 3 24 24 H 1.09009 * 109.46951 * 240.02389 * 1 2 3 25 25 H 1.08003 * 120.08713 * 0.02562 * 5 4 3 26 26 H 1.08003 * 119.65765 * 180.02562 * 6 5 4 27 27 H 1.08997 * 109.47251 * 29.98318 * 8 7 6 28 28 H 1.08996 * 109.46977 * 149.98003 * 8 7 6 29 29 H 1.08997 * 109.47130 * 300.00291 * 9 8 7 30 30 H 1.09008 * 109.46797 * 59.99956 * 9 8 7 31 31 H 0.96999 * 119.99636 * 180.02562 * 13 12 10 32 32 H 1.08002 * 120.14449 * 180.02562 * 18 7 6 33 33 H 1.09006 * 109.46941 * 90.01975 * 21 20 2 34 34 H 1.08993 * 109.47410 * 210.02016 * 21 20 2 35 35 H 1.08998 * 109.47153 * 330.02696 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2766 1.1025 0.0000 4 6 3.5845 0.7757 0.0006 5 6 4.7568 1.5216 0.0004 6 6 5.9771 0.8806 0.0006 7 6 6.0491 -0.5049 0.0003 8 6 7.3941 -1.1848 0.0011 9 6 7.8501 -1.4149 -1.4411 10 6 9.1953 -2.0942 -1.4402 11 1 9.6767 -2.3377 -0.5046 12 6 9.8116 -2.4046 -2.6338 13 7 9.2252 -2.1085 -3.7732 14 14 11.4788 -3.2473 -2.6328 15 1 11.3731 -4.5529 -1.9333 16 1 11.9215 -3.4705 -4.0326 17 1 12.4669 -2.3887 -1.9316 18 6 4.9075 -1.2575 0.0004 19 6 3.6642 -0.6270 0.0001 20 6 2.2742 -1.0986 0.0005 21 6 1.8043 -2.5304 0.0006 22 1 -0.3634 1.0276 -0.0005 23 1 -0.3633 -0.5142 -0.8897 24 1 -0.3633 -0.5135 0.8903 25 1 4.7118 2.6007 0.0000 26 1 6.8866 1.4630 0.0008 27 1 8.1195 -0.5544 0.5154 28 1 7.3166 -2.1429 0.5150 29 1 7.1247 -2.0453 -1.9553 30 1 7.9276 -0.4567 -1.9549 31 1 9.6586 -2.3273 -4.6129 32 1 4.9688 -2.3358 0.0006 33 1 1.6918 -2.8760 -1.0271 34 1 2.5362 -3.1530 0.5151 35 1 0.8450 -2.5980 0.5137 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260024603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:46 Heat of formation + Delta-G solvation = -17.994972 kcal Electronic energy + Delta-G solvation = -16576.422822 eV Core-core repulsion = 13924.981361 eV Total energy + Delta-G solvation = -2651.441462 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.42980 -39.39386 -35.76730 -35.32795 -33.74982 -32.01072 -30.74322 -29.42492 -27.12847 -26.73396 -23.94493 -22.89191 -21.74329 -20.95137 -18.57089 -17.94514 -17.32220 -17.30173 -16.52827 -16.20952 -15.11975 -14.99770 -14.54667 -14.27563 -14.18951 -14.14442 -13.85546 -13.77151 -13.52991 -13.22900 -13.06349 -12.82010 -12.77817 -12.46777 -12.28981 -11.95146 -11.61721 -11.53573 -11.20053 -10.74137 -10.54946 -9.34524 -8.94407 -8.19171 -6.31759 -0.03377 0.37715 1.34484 1.40961 1.44320 1.52257 1.77217 2.41428 2.72576 3.13634 3.44210 3.68653 3.92964 4.00613 4.16448 4.32390 4.40120 4.45095 4.58441 4.68960 4.77048 4.78457 4.83655 4.86263 4.95646 5.03977 5.09773 5.15388 5.27419 5.30766 5.49423 5.52234 5.62993 5.74364 5.83944 5.84346 6.21403 6.24082 6.85083 7.37895 8.92268 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.039149 B = 0.004500 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.044617 B = 6221.110070 C = 6552.631051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.020 3.980 3 O -0.205 6.205 4 C 0.017 3.983 5 C -0.104 4.104 6 C -0.099 4.099 7 C -0.092 4.092 8 C -0.061 4.061 9 C 0.036 3.964 10 C -0.545 4.545 11 H 0.065 0.935 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.967 3.033 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.265 1.265 18 C -0.089 4.089 19 C -0.141 4.141 20 C -0.201 4.201 21 C -0.076 4.076 22 H 0.087 0.913 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.156 0.844 26 H 0.148 0.852 27 H 0.071 0.929 28 H 0.063 0.937 29 H -0.014 1.014 30 H -0.009 1.009 31 H 0.263 0.737 32 H 0.123 0.877 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.883 3.680 9.166 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.027 4.027 3 O -0.108 6.108 4 C -0.030 4.030 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.092 4.092 8 C -0.099 4.099 9 C -0.001 4.001 10 C -0.583 4.583 11 H 0.083 0.917 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.791 3.209 15 H -0.191 1.191 16 H -0.210 1.210 17 H -0.189 1.189 18 C -0.107 4.107 19 C -0.142 4.142 20 C -0.202 4.202 21 C -0.133 4.133 22 H 0.106 0.894 23 H 0.123 0.877 24 H 0.128 0.872 25 H 0.173 0.827 26 H 0.166 0.834 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.004 0.996 30 H 0.010 0.990 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.967 3.934 8.989 19.600 hybrid contribution 1.196 -0.465 -0.518 1.384 sum -15.770 3.469 8.471 18.234 Atomic orbital electron populations 1.20620 0.81291 1.05398 1.05514 1.22965 0.95595 0.82553 1.01631 1.83896 1.14807 1.34897 1.77176 1.19806 0.83742 0.93837 1.05599 1.20141 0.87312 1.00681 1.04083 1.21082 0.97522 0.93766 0.99285 1.19899 0.95631 0.94428 0.99211 1.20543 0.91759 0.99318 0.98237 1.18924 0.94699 0.94832 0.91639 1.21685 1.04641 1.39044 0.92915 0.91698 1.26008 1.02143 0.96523 0.95120 1.70117 1.40565 1.48770 0.98033 0.85474 0.79027 0.79213 0.77178 1.19091 1.20951 1.18944 1.20220 0.90048 1.00019 1.00461 1.20150 0.94607 0.93602 1.05840 1.21257 0.89758 0.98187 1.10981 1.20205 1.02056 0.88277 1.02750 0.89442 0.87722 0.87219 0.82652 0.83396 0.91029 0.91830 0.99583 0.99011 0.92793 0.85905 0.90976 0.91976 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 9.86 71.24 0.70 -0.25 16 2 C 0.02 0.49 7.23 24.72 0.18 0.67 16 3 O -0.20 -6.31 10.58 -9.00 -0.10 -6.40 16 4 C 0.02 0.57 7.42 22.99 0.17 0.74 16 5 C -0.10 -3.29 10.07 22.35 0.23 -3.07 16 6 C -0.10 -3.40 9.66 22.30 0.22 -3.19 16 7 C -0.09 -3.57 5.10 -20.09 -0.10 -3.67 16 8 C -0.06 -2.62 5.27 29.85 0.16 -2.47 16 9 C 0.04 1.97 4.95 29.85 0.15 2.12 16 10 C -0.55 -31.39 9.11 25.60 0.23 -31.16 16 11 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 12 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 13 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 14 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 18 C -0.09 -3.38 9.68 22.20 0.21 -3.16 16 19 C -0.14 -4.98 6.38 -20.21 -0.13 -5.10 16 20 C -0.20 -5.66 6.35 -18.60 -0.12 -5.78 16 21 C -0.08 -1.59 10.18 71.23 0.73 -0.86 16 22 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 26 H 0.15 4.54 8.06 -2.91 -0.02 4.51 16 27 H 0.07 2.87 8.08 -2.39 -0.02 2.85 16 28 H 0.06 2.62 8.08 -2.39 -0.02 2.60 16 29 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 30 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 31 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.34 7.85 -2.39 -0.02 1.32 16 Total: -1.00 -70.77 302.68 6.36 -64.41 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.06 Total: 7.95 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 3.08 Total: -54.73 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.28 Total: -57.74 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.10 Total: -6.40 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -70.77 6.36 -64.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260024603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.411 kcal (2) G-P(sol) polarization free energy of solvation -70.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds