Wall clock time and date at job start Mon Mar 30 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38423 * 119.82859 * 2 1 4 4 C 1.37860 * 120.17565 * 179.97438 * 3 2 1 5 5 C 1.39872 * 119.82351 * 0.03702 * 4 3 2 6 6 C 1.47165 * 120.17370 * 180.26161 * 5 4 3 7 7 O 1.21254 * 119.99783 * 354.80873 * 6 5 4 8 8 C 1.39840 * 119.65870 * 359.97438 * 5 4 3 9 9 C 1.50693 * 120.08929 * 180.02562 * 8 5 4 10 10 H 1.09000 * 109.47318 * 3.60321 * 9 8 5 11 11 C 1.50705 * 109.46793 * 243.61046 * 9 8 5 12 12 H 1.08001 * 119.99386 * 265.71470 * 11 9 8 13 13 C 1.37871 * 120.00527 * 85.71466 * 11 9 8 14 14 N 1.31517 * 119.99767 * 5.35473 * 13 11 9 15 15 Si 1.86799 * 120.00489 * 185.35152 * 13 11 9 16 16 H 1.48500 * 109.46802 * 59.99706 * 15 13 11 17 17 H 1.48491 * 109.47209 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46902 * 300.00270 * 15 13 11 19 19 C 1.53002 * 109.47615 * 123.60701 * 9 8 5 20 20 C 1.52998 * 117.49901 * 254.48205 * 19 9 8 21 21 C 1.52995 * 117.50173 * 185.82009 * 19 9 8 22 22 C 1.37905 * 119.81910 * 359.97438 * 8 5 4 23 23 H 1.08997 * 109.46952 * 269.98114 * 1 2 3 24 24 H 1.09002 * 109.46638 * 29.97735 * 1 2 3 25 25 H 1.08997 * 109.47164 * 149.98089 * 1 2 3 26 26 H 1.08000 * 119.91483 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.09072 * 180.02562 * 4 3 2 28 28 H 1.07999 * 120.00163 * 174.81444 * 6 5 4 29 29 H 0.96997 * 120.00151 * 179.97438 * 14 13 11 30 30 H 1.09004 * 115.54638 * 40.15029 * 19 9 8 31 31 H 1.08998 * 117.49915 * 359.97438 * 20 19 9 32 32 H 1.08999 * 117.49889 * 145.01636 * 20 19 9 33 33 H 1.09001 * 117.49709 * 214.98062 * 21 19 9 34 34 H 1.09001 * 117.49691 * 359.97438 * 21 19 9 35 35 H 1.08003 * 119.91205 * 179.97438 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2008 0.0000 4 6 3.5741 1.2092 0.0005 5 6 4.2771 0.0000 0.0003 6 6 5.7487 -0.0001 0.0067 7 8 6.3554 1.0459 -0.0829 8 6 3.5743 -1.2090 0.0001 9 6 4.3218 -2.5175 0.0004 10 1 5.3926 -2.3242 0.0654 11 6 4.0231 -3.2669 -1.2725 12 1 3.2321 -4.0019 -1.2934 13 6 4.7595 -3.0142 -2.4104 14 7 5.7894 -2.1979 -2.3593 15 14 4.2945 -3.8312 -4.0246 16 1 2.9118 -3.4389 -4.3977 17 1 5.2357 -3.3974 -5.0881 18 1 4.3661 -5.3066 -3.8712 19 6 3.8812 -3.3564 1.2016 20 6 4.8511 -3.4675 2.3796 21 6 4.6251 -4.6685 1.4579 22 6 2.1952 -1.2005 0.0006 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6514 2.1337 -0.0004 27 1 4.1099 2.1469 0.0010 28 1 6.2883 -0.9319 0.0910 29 1 6.3078 -2.0204 -3.1597 30 1 2.8152 -3.3296 1.4280 31 1 5.8033 -2.9433 2.2987 32 1 4.4233 -3.5142 3.3811 33 1 4.0486 -5.5049 1.8534 34 1 5.4281 -4.9343 0.7705 35 1 1.6509 -2.1334 0.0000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260110585.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:27 Heat of formation + Delta-G solvation = -1.839793 kcal Electronic energy + Delta-G solvation = -17525.433153 eV Core-core repulsion = 14874.692232 eV Total energy + Delta-G solvation = -2650.740921 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.28237 -37.43837 -36.64396 -33.33007 -32.11232 -30.87816 -27.30651 -27.22024 -23.82745 -22.83206 -21.65809 -21.35583 -19.60413 -18.90076 -16.60084 -16.22107 -15.24282 -14.93724 -14.66456 -13.88220 -13.76531 -13.52646 -13.22318 -13.04044 -12.98510 -12.46773 -12.13001 -11.81475 -11.46420 -11.25217 -11.03521 -10.84147 -10.83052 -10.62963 -10.38084 -10.06742 -9.54687 -9.48154 -8.89860 -8.76095 -8.44289 -8.03160 -7.74964 -6.20584 -4.22150 1.50956 2.23735 3.24887 3.31088 3.32451 3.34299 4.29302 4.62425 4.68348 5.14315 5.28420 5.33583 5.45959 5.50758 5.72719 5.77469 5.81297 5.86055 5.87137 6.10282 6.15975 6.23280 6.32873 6.41327 6.46070 6.65974 6.68486 6.84793 6.88129 6.93012 7.13858 7.23767 7.30660 7.65166 7.72811 7.79534 8.15457 8.38502 8.81597 9.41237 10.88097 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.009950 C = 0.009476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.392722 B = 2813.429328 C = 2954.261163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 C -0.168 4.168 4 C -0.064 4.064 5 C -0.199 4.199 6 C 0.406 3.594 7 O -0.500 6.500 8 C 0.039 3.961 9 C 0.082 3.918 10 H 0.069 0.931 11 C -0.501 4.501 12 H 0.061 0.939 13 C 0.068 3.932 14 N -0.886 5.886 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.121 4.121 20 C -0.201 4.201 21 C -0.169 4.169 22 C -0.132 4.132 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.111 0.889 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.267 0.733 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 0.697 5.839 8.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.067 4.067 3 C -0.186 4.186 4 C -0.083 4.083 5 C -0.200 4.200 6 C 0.268 3.732 7 O -0.377 6.377 8 C 0.038 3.962 9 C 0.064 3.936 10 H 0.087 0.913 11 C -0.538 4.538 12 H 0.079 0.921 13 C -0.135 4.135 14 N -0.522 5.522 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.139 4.139 20 C -0.238 4.238 21 C -0.206 4.206 22 C -0.151 4.151 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.129 0.871 27 H 0.136 0.864 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.783 1.319 5.667 8.204 hybrid contribution -0.406 -0.442 -1.166 1.311 sum -6.189 0.877 4.501 7.703 Atomic orbital electron populations 1.20781 0.92084 1.02320 1.01678 1.20039 0.95392 0.93563 0.97729 1.20662 0.93950 0.96903 1.07132 1.21228 0.93878 0.97471 0.95687 1.20685 0.96556 0.93568 1.09217 1.24186 0.88691 0.92655 0.67619 1.90367 1.71693 1.37516 1.38131 1.20951 0.93448 0.95699 0.86083 1.17846 0.96846 0.87152 0.91801 0.91326 1.20841 1.18175 1.21132 0.93681 0.92052 1.24969 0.94431 0.94971 0.99169 1.69806 1.17210 1.35643 1.29579 0.86617 0.78504 0.79718 0.83042 1.20176 1.21255 1.20095 1.22426 0.95978 0.99272 0.96231 1.23011 1.01834 1.04080 0.94858 1.22738 1.04064 0.91361 1.02483 1.20787 0.94219 0.96682 1.03362 0.91629 0.92094 0.91666 0.87065 0.86409 0.87280 0.92364 0.89499 0.89476 0.90324 0.90415 0.88553 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.00 36.01 0.36 -1.12 16 2 C -0.07 -1.16 5.89 -104.50 -0.62 -1.78 16 3 C -0.17 -2.94 9.68 -39.65 -0.38 -3.33 16 4 C -0.06 -1.27 9.60 -39.11 -0.38 -1.64 16 5 C -0.20 -4.32 5.87 -105.06 -0.62 -4.94 16 6 C 0.41 9.11 10.87 34.35 0.37 9.48 16 7 O -0.50 -11.94 17.18 5.58 0.10 -11.84 16 8 C 0.04 0.84 4.81 -104.15 -0.50 0.34 16 9 C 0.08 1.81 1.93 -92.92 -0.18 1.63 16 10 H 0.07 1.63 4.63 -51.93 -0.24 1.39 16 11 C -0.50 -12.30 7.81 -34.44 -0.27 -12.57 16 12 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 13 C 0.07 1.74 5.45 -17.82 -0.10 1.64 16 14 N -0.89 -23.51 12.81 55.43 0.71 -22.80 16 15 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 19 C -0.12 -2.29 4.89 -90.62 -0.44 -2.73 16 20 C -0.20 -3.35 10.18 -26.69 -0.27 -3.62 16 21 C -0.17 -2.96 10.03 -26.70 -0.27 -3.23 16 22 C -0.13 -2.58 8.37 -39.65 -0.33 -2.91 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 25 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 26 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 27 H 0.12 2.21 7.66 -52.49 -0.40 1.81 16 28 H 0.11 2.45 5.94 -52.49 -0.31 2.14 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.09 1.57 7.18 -51.93 -0.37 1.20 16 31 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 35 H 0.12 2.21 7.56 -52.48 -0.40 1.82 16 LS Contribution 300.19 15.07 4.52 4.52 Total: -1.00 -27.25 300.19 -7.95 -35.20 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.64 Total: 4.36 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -3.62 Total: -24.78 kcal Atomic # 7 Polarization: -23.51 SS G_CDS: 0.71 Total: -22.80 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.10 Total: -11.84 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.25 -7.95 -35.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110585.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.361 kcal (2) G-P(sol) polarization free energy of solvation -27.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds