Wall clock time and date at job start Mon Mar 30 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38423 * 119.82859 * 2 1 4 4 C 1.37860 * 120.17565 * 179.97438 * 3 2 1 5 5 C 1.39872 * 119.82351 * 0.03702 * 4 3 2 6 6 C 1.47165 * 120.17370 * 180.26161 * 5 4 3 7 7 O 1.21254 * 119.99783 * 354.80873 * 6 5 4 8 8 C 1.39840 * 119.65870 * 359.97438 * 5 4 3 9 9 C 1.50693 * 120.08929 * 180.02562 * 8 5 4 10 10 H 1.09000 * 109.47318 * 3.60321 * 9 8 5 11 11 C 1.50705 * 109.46793 * 243.61046 * 9 8 5 12 12 H 1.08001 * 119.99386 * 265.71470 * 11 9 8 13 13 C 1.37871 * 120.00527 * 85.71466 * 11 9 8 14 14 N 1.31517 * 119.99767 * 5.35473 * 13 11 9 15 15 Si 1.86799 * 120.00489 * 185.35152 * 13 11 9 16 16 H 1.48500 * 109.46802 * 59.99706 * 15 13 11 17 17 H 1.48491 * 109.47209 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46902 * 300.00270 * 15 13 11 19 19 C 1.53002 * 109.47615 * 123.60701 * 9 8 5 20 20 C 1.52998 * 117.49901 * 254.48205 * 19 9 8 21 21 C 1.52995 * 117.50173 * 185.82009 * 19 9 8 22 22 C 1.37905 * 119.81910 * 359.97438 * 8 5 4 23 23 H 1.08997 * 109.46952 * 269.98114 * 1 2 3 24 24 H 1.09002 * 109.46638 * 29.97735 * 1 2 3 25 25 H 1.08997 * 109.47164 * 149.98089 * 1 2 3 26 26 H 1.08000 * 119.91483 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.09072 * 180.02562 * 4 3 2 28 28 H 1.07999 * 120.00163 * 174.81444 * 6 5 4 29 29 H 0.96997 * 120.00151 * 179.97438 * 14 13 11 30 30 H 1.09004 * 115.54638 * 40.15029 * 19 9 8 31 31 H 1.08998 * 117.49915 * 359.97438 * 20 19 9 32 32 H 1.08999 * 117.49889 * 145.01636 * 20 19 9 33 33 H 1.09001 * 117.49709 * 214.98062 * 21 19 9 34 34 H 1.09001 * 117.49691 * 359.97438 * 21 19 9 35 35 H 1.08003 * 119.91205 * 179.97438 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2008 0.0000 4 6 3.5741 1.2092 0.0005 5 6 4.2771 0.0000 0.0003 6 6 5.7487 -0.0001 0.0067 7 8 6.3554 1.0459 -0.0829 8 6 3.5743 -1.2090 0.0001 9 6 4.3218 -2.5175 0.0004 10 1 5.3926 -2.3242 0.0654 11 6 4.0231 -3.2669 -1.2725 12 1 3.2321 -4.0019 -1.2934 13 6 4.7595 -3.0142 -2.4104 14 7 5.7894 -2.1979 -2.3593 15 14 4.2945 -3.8312 -4.0246 16 1 2.9118 -3.4389 -4.3977 17 1 5.2357 -3.3974 -5.0881 18 1 4.3661 -5.3066 -3.8712 19 6 3.8812 -3.3564 1.2016 20 6 4.8511 -3.4675 2.3796 21 6 4.6251 -4.6685 1.4579 22 6 2.1952 -1.2005 0.0006 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6514 2.1337 -0.0004 27 1 4.1099 2.1469 0.0010 28 1 6.2883 -0.9319 0.0910 29 1 6.3078 -2.0204 -3.1597 30 1 2.8152 -3.3296 1.4280 31 1 5.8033 -2.9433 2.2987 32 1 4.4233 -3.5142 3.3811 33 1 4.0486 -5.5049 1.8534 34 1 5.4281 -4.9343 0.7705 35 1 1.6509 -2.1334 0.0000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260110585.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:27 Heat of formation + Delta-G solvation = -14.043945 kcal Electronic energy + Delta-G solvation = -17525.962365 eV Core-core repulsion = 14874.692232 eV Total energy + Delta-G solvation = -2651.270132 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.87220 -39.15402 -38.10951 -35.03381 -33.66082 -32.46129 -29.00848 -28.57553 -25.61369 -24.34313 -23.09653 -22.84500 -21.14231 -20.47599 -18.42340 -17.88251 -16.88022 -16.61896 -16.27726 -15.38978 -15.30522 -15.10293 -14.78301 -14.57375 -14.31115 -14.12860 -13.67424 -13.26632 -12.91686 -12.84802 -12.67868 -12.38454 -12.31038 -12.20261 -11.91251 -11.72916 -11.23570 -10.99313 -10.62312 -10.44141 -10.24306 -9.52917 -9.29760 -8.13106 -6.18850 -0.07982 0.72744 1.42673 1.44685 1.50126 1.68308 2.42698 3.04403 3.19891 3.29749 3.63930 4.01666 4.04919 4.13814 4.31896 4.36374 4.45687 4.50425 4.63351 4.76101 4.90917 4.91821 4.95770 4.96076 5.05383 5.24486 5.26383 5.34992 5.39910 5.48860 5.61494 5.70023 5.72841 5.82193 6.02470 6.22522 6.33752 6.62895 6.90353 7.46204 8.93076 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.009950 C = 0.009476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.392722 B = 2813.429328 C = 2954.261163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.056 4.056 3 C -0.163 4.163 4 C -0.074 4.074 5 C -0.227 4.227 6 C 0.409 3.591 7 O -0.524 6.524 8 C 0.025 3.975 9 C 0.082 3.918 10 H 0.043 0.957 11 C -0.500 4.500 12 H 0.059 0.941 13 C 0.022 3.978 14 N -0.913 5.913 15 Si 0.942 3.058 16 H -0.275 1.275 17 H -0.294 1.294 18 H -0.269 1.269 19 C -0.138 4.138 20 C -0.185 4.185 21 C -0.168 4.168 22 C -0.146 4.146 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.259 0.741 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.977 0.759 6.604 11.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.057 4.057 3 C -0.180 4.180 4 C -0.092 4.092 5 C -0.228 4.228 6 C 0.274 3.726 7 O -0.403 6.403 8 C 0.024 3.976 9 C 0.063 3.937 10 H 0.061 0.939 11 C -0.538 4.538 12 H 0.078 0.922 13 C -0.178 4.178 14 N -0.552 5.552 15 Si 0.769 3.231 16 H -0.200 1.200 17 H -0.220 1.220 18 H -0.194 1.194 19 C -0.156 4.156 20 C -0.222 4.222 21 C -0.205 4.205 22 C -0.164 4.164 23 H 0.107 0.893 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.166 0.834 27 H 0.139 0.861 28 H 0.118 0.882 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.516 1.359 6.441 10.763 hybrid contribution 0.361 -0.446 -1.342 1.460 sum -8.155 0.913 5.099 9.660 Atomic orbital electron populations 1.20872 0.88579 1.03652 1.03534 1.20534 0.97874 0.92498 0.94757 1.21078 0.93031 0.98657 1.05259 1.21421 0.95211 0.96794 0.95762 1.20678 0.95804 0.94796 1.11566 1.24198 0.89642 0.91992 0.66761 1.90338 1.72269 1.37931 1.39737 1.20910 0.94509 0.95024 0.87183 1.17715 0.95629 0.88068 0.92258 0.93908 1.21116 1.17301 1.20772 0.94617 0.92239 1.25586 0.94696 0.95773 1.01700 1.69939 1.18319 1.37386 1.29512 0.85841 0.77874 0.79253 0.80111 1.20014 1.21976 1.19361 1.22339 0.96976 0.99959 0.96302 1.23055 1.00850 1.02772 0.95503 1.22755 1.03412 0.91945 1.02342 1.20963 0.93420 0.98137 1.03911 0.89303 0.90080 0.91101 0.83399 0.86098 0.88168 0.93168 0.88301 0.90344 0.87481 0.87849 0.90723 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 10.00 71.24 0.71 -1.68 16 2 C -0.06 -1.77 5.89 -19.79 -0.12 -1.89 16 3 C -0.16 -5.19 9.68 22.22 0.22 -4.97 16 4 C -0.07 -2.83 9.60 22.58 0.22 -2.62 16 5 C -0.23 -9.99 5.87 -20.15 -0.12 -10.11 16 6 C 0.41 19.16 10.87 70.17 0.76 19.93 16 7 O -0.52 -25.92 17.18 -2.95 -0.05 -25.97 16 8 C 0.02 1.06 4.81 -19.56 -0.09 0.97 16 9 C 0.08 3.66 1.93 -12.29 -0.02 3.64 16 10 H 0.04 2.13 4.63 -2.39 -0.01 2.11 16 11 C -0.50 -24.79 7.81 25.60 0.20 -24.59 16 12 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 13 C 0.02 1.16 5.45 84.65 0.46 1.62 16 14 N -0.91 -50.13 12.81 21.45 0.27 -49.86 16 15 Si 0.94 42.10 29.54 68.60 2.03 44.12 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 C -0.14 -5.11 4.89 -10.80 -0.05 -5.16 16 20 C -0.18 -5.95 10.18 30.62 0.31 -5.64 16 21 C -0.17 -5.69 10.03 30.62 0.31 -5.39 16 22 C -0.15 -5.45 8.37 22.23 0.19 -5.27 16 23 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.08 1.48 8.08 -2.39 -0.02 1.46 16 25 H 0.07 1.50 8.08 -2.39 -0.02 1.48 16 26 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 27 H 0.12 4.49 7.66 -2.91 -0.02 4.46 16 28 H 0.10 4.83 5.94 -2.91 -0.02 4.81 16 29 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.10 3.40 7.18 -2.38 -0.02 3.39 16 31 H 0.08 2.65 8.09 -2.39 -0.02 2.63 16 32 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.13 4.45 7.56 -2.91 -0.02 4.43 16 Total: -1.00 -59.31 300.19 6.30 -53.01 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 1.08 Total: 19.86 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 2.97 Total: -41.16 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.27 Total: -49.86 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -59.31 6.30 -53.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110585.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.966 kcal (2) G-P(sol) polarization free energy of solvation -59.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds