Wall clock time and date at job start Mon Mar 30 2020 05:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38435 * 119.81977 * 2 1 4 4 C 1.37863 * 120.16932 * 179.97438 * 3 2 1 5 5 C 1.39874 * 119.82698 * 359.79134 * 4 3 2 6 6 C 1.47168 * 120.17295 * 180.23232 * 5 4 3 7 7 O 1.21253 * 119.99885 * 5.23953 * 6 5 4 8 8 C 1.39830 * 119.65462 * 0.45854 * 5 4 3 9 9 C 1.50706 * 120.09050 * 179.79496 * 8 5 4 10 10 H 1.09002 * 109.46506 * 354.38344 * 9 8 5 11 11 C 1.50691 * 109.47193 * 114.38510 * 9 8 5 12 12 H 1.07997 * 120.00298 * 0.02562 * 11 9 8 13 13 C 1.37885 * 119.99884 * 180.02562 * 11 9 8 14 14 N 1.31510 * 119.99738 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99741 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47385 * 89.99564 * 15 13 11 17 17 H 1.48502 * 109.47401 * 329.99292 * 15 13 11 18 18 H 1.48503 * 109.46575 * 209.99658 * 15 13 11 19 19 C 1.52998 * 109.47258 * 234.38902 * 9 8 5 20 20 C 1.53002 * 117.50049 * 128.74310 * 19 9 8 21 21 C 1.53002 * 117.50014 * 60.08383 * 19 9 8 22 22 C 1.37906 * 119.82662 * 359.52046 * 8 5 4 23 23 H 1.08997 * 109.46603 * 269.97431 * 1 2 3 24 24 H 1.08996 * 109.47390 * 29.98117 * 1 2 3 25 25 H 1.09000 * 109.46577 * 149.98142 * 1 2 3 26 26 H 1.07999 * 119.91292 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.08285 * 180.02562 * 4 3 2 28 28 H 1.07997 * 119.99897 * 185.23444 * 6 5 4 29 29 H 0.96992 * 120.00150 * 0.02562 * 14 13 11 30 30 H 1.09004 * 115.54973 * 274.41448 * 19 9 8 31 31 H 1.09003 * 117.49781 * 359.97438 * 20 19 9 32 32 H 1.09003 * 117.49789 * 145.02103 * 20 19 9 33 33 H 1.09002 * 117.49810 * 214.98078 * 21 19 9 34 34 H 1.09001 * 117.49764 * 359.97438 * 21 19 9 35 35 H 1.07997 * 119.91916 * 180.23139 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2011 0.0000 4 6 3.5741 1.2095 0.0005 5 6 4.2772 0.0003 0.0055 6 6 5.7488 0.0004 0.0113 7 8 6.3546 1.0463 0.1076 8 6 3.5745 -1.2086 0.0002 9 6 4.3221 -2.5172 0.0008 10 1 5.3908 -2.3249 -0.0949 11 6 4.0565 -3.2468 1.2922 12 1 3.4106 -2.8073 2.0378 13 6 4.6382 -4.4757 1.5219 14 7 5.4243 -5.0111 0.6137 15 14 4.3084 -5.3805 3.1225 16 1 3.1168 -6.2521 2.9621 17 1 4.0590 -4.3956 4.2057 18 1 5.4873 -6.2131 3.4724 19 6 3.8508 -3.3744 -1.1756 20 6 4.9224 -3.9560 -2.0999 21 6 4.0366 -2.8052 -2.5836 22 6 2.1954 -1.2004 0.0001 23 1 -0.3632 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3632 -0.8898 -0.5141 26 1 1.6511 2.1338 0.0004 27 1 4.1097 2.1473 0.0010 28 1 6.2892 -0.9311 -0.0703 29 1 5.5952 -4.5414 -0.2175 30 1 2.9634 -3.9796 -0.9905 31 1 5.9632 -3.7276 -1.8702 32 1 4.7398 -4.9438 -2.5232 33 1 3.2715 -3.0363 -3.3249 34 1 4.4942 -1.8198 -2.6718 35 1 1.6512 -2.1333 -0.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260110589.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:29 Heat of formation + Delta-G solvation = 0.133901 kcal Electronic energy + Delta-G solvation = -17512.641119 eV Core-core repulsion = 14861.985784 eV Total energy + Delta-G solvation = -2650.655335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.67216 -37.88344 -36.93701 -33.15467 -32.42271 -31.11867 -27.51092 -27.10036 -23.49359 -23.15286 -21.90485 -21.49879 -19.94801 -19.05960 -16.99996 -16.62457 -15.59348 -14.98305 -14.24797 -14.07831 -13.83473 -13.79702 -13.45919 -13.32230 -13.27032 -12.94781 -12.29661 -11.97962 -11.48634 -11.39832 -10.94664 -10.92382 -10.84908 -10.57352 -10.20364 -10.07866 -9.63794 -9.43054 -9.03361 -8.71381 -8.38791 -8.31132 -7.99357 -6.36241 -4.17780 1.13567 1.94313 2.90415 3.39462 3.43022 3.58547 4.28052 4.48558 4.65111 4.80511 5.10658 5.19584 5.28003 5.40723 5.56662 5.64448 5.67430 5.73649 5.81685 5.86327 5.94980 6.05219 6.11655 6.24221 6.37504 6.48791 6.56771 6.67809 6.78079 6.81568 6.82838 6.98403 7.10272 7.41929 7.45175 7.87471 8.03425 8.36246 8.82238 9.55807 11.00099 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.008735 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.300786 B = 3204.738336 C = 3435.588415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.059 4.059 3 C -0.162 4.162 4 C -0.059 4.059 5 C -0.214 4.214 6 C 0.387 3.613 7 O -0.484 6.484 8 C 0.038 3.962 9 C 0.081 3.919 10 H 0.033 0.967 11 C -0.598 4.598 12 H 0.054 0.946 13 C 0.029 3.971 14 N -0.909 5.909 15 Si 1.066 2.934 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.284 1.284 19 C -0.107 4.107 20 C -0.168 4.168 21 C -0.208 4.208 22 C -0.123 4.123 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.285 0.715 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.686 6.283 -3.319 9.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.059 4.059 3 C -0.180 4.180 4 C -0.078 4.078 5 C -0.215 4.215 6 C 0.249 3.751 7 O -0.360 6.360 8 C 0.037 3.963 9 C 0.062 3.938 10 H 0.051 0.949 11 C -0.635 4.635 12 H 0.072 0.928 13 C -0.178 4.178 14 N -0.545 5.545 15 Si 0.894 3.106 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.210 1.210 19 C -0.126 4.126 20 C -0.205 4.205 21 C -0.245 4.245 22 C -0.141 4.141 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.997 5.447 -2.441 8.461 hybrid contribution -0.510 1.214 -0.830 1.557 sum -6.507 6.661 -3.272 9.870 Atomic orbital electron populations 1.20818 0.91627 1.02447 1.02221 1.20154 0.95795 0.93399 0.96566 1.20763 0.93913 0.97174 1.06181 1.21221 0.93951 0.97277 0.95313 1.20677 0.96220 0.93911 1.10662 1.24278 0.89014 0.92859 0.68955 1.90418 1.71623 1.37156 1.36772 1.20566 0.93797 0.94687 0.87234 1.17872 0.94241 0.87334 0.94308 0.94918 1.21804 1.34191 1.06281 1.01257 0.92816 1.25702 0.93524 0.95085 1.03469 1.70727 1.33479 1.41337 1.09004 0.83583 0.76441 0.75750 0.74792 1.21467 1.21488 1.20988 1.22654 0.99741 1.00983 0.89258 1.22796 0.96537 0.96615 1.04528 1.23040 1.03849 0.97904 0.99745 1.20887 0.93975 0.97168 1.02088 0.91158 0.91876 0.91451 0.86550 0.85971 0.87693 0.90078 0.88806 0.89384 0.89833 0.90273 0.90115 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.00 36.01 0.36 -1.02 16 2 C -0.06 -0.93 5.89 -104.49 -0.62 -1.55 16 3 C -0.16 -2.51 9.68 -39.65 -0.38 -2.89 16 4 C -0.06 -1.02 9.60 -39.11 -0.38 -1.40 16 5 C -0.21 -4.12 5.87 -105.06 -0.62 -4.74 16 6 C 0.39 7.50 10.97 34.36 0.38 7.88 16 7 O -0.48 -10.02 17.18 5.58 0.10 -9.93 16 8 C 0.04 0.76 4.42 -104.15 -0.46 0.30 16 9 C 0.08 1.81 1.72 -92.93 -0.16 1.65 16 10 H 0.03 0.77 5.09 -51.93 -0.26 0.51 16 11 C -0.60 -15.33 8.30 -34.44 -0.29 -15.62 16 12 H 0.05 1.41 7.72 -52.49 -0.41 1.01 16 13 C 0.03 0.77 5.30 -17.82 -0.09 0.67 16 14 N -0.91 -25.08 13.38 55.43 0.74 -24.34 16 15 Si 1.07 23.96 29.90 -169.99 -5.08 18.88 16 16 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.11 -2.26 3.64 -90.62 -0.33 -2.59 16 20 C -0.17 -3.30 8.14 -26.69 -0.22 -3.52 16 21 C -0.21 -3.74 9.87 -26.69 -0.26 -4.00 16 22 C -0.12 -2.28 8.60 -39.65 -0.34 -2.62 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 25 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 26 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.12 1.97 7.66 -52.49 -0.40 1.57 16 28 H 0.11 1.98 5.94 -52.49 -0.31 1.67 16 29 H 0.28 7.46 3.55 -40.82 -0.15 7.32 16 30 H 0.09 2.09 8.11 -51.93 -0.42 1.67 16 31 H 0.09 1.77 7.42 -51.93 -0.39 1.39 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.13 2.34 7.92 -52.49 -0.42 1.93 16 LS Contribution 293.99 15.07 4.43 4.43 Total: -1.00 -28.42 293.99 -7.72 -36.14 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.50 Total: 4.25 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: -3.41 Total: -29.44 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.74 Total: -24.34 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.10 Total: -9.93 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.08 Total: 18.88 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.42 -7.72 -36.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110589.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.272 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds