Wall clock time and date at job start Mon Mar 30 2020 05:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38435 * 119.81977 * 2 1 4 4 C 1.37863 * 120.16932 * 179.97438 * 3 2 1 5 5 C 1.39874 * 119.82698 * 359.79134 * 4 3 2 6 6 C 1.47168 * 120.17295 * 180.23232 * 5 4 3 7 7 O 1.21253 * 119.99885 * 5.23953 * 6 5 4 8 8 C 1.39830 * 119.65462 * 0.45854 * 5 4 3 9 9 C 1.50706 * 120.09050 * 179.79496 * 8 5 4 10 10 H 1.09002 * 109.46506 * 354.38344 * 9 8 5 11 11 C 1.50691 * 109.47193 * 114.38510 * 9 8 5 12 12 H 1.07997 * 120.00298 * 0.02562 * 11 9 8 13 13 C 1.37885 * 119.99884 * 180.02562 * 11 9 8 14 14 N 1.31510 * 119.99738 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99741 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47385 * 89.99564 * 15 13 11 17 17 H 1.48502 * 109.47401 * 329.99292 * 15 13 11 18 18 H 1.48503 * 109.46575 * 209.99658 * 15 13 11 19 19 C 1.52998 * 109.47258 * 234.38902 * 9 8 5 20 20 C 1.53002 * 117.50049 * 128.74310 * 19 9 8 21 21 C 1.53002 * 117.50014 * 60.08383 * 19 9 8 22 22 C 1.37906 * 119.82662 * 359.52046 * 8 5 4 23 23 H 1.08997 * 109.46603 * 269.97431 * 1 2 3 24 24 H 1.08996 * 109.47390 * 29.98117 * 1 2 3 25 25 H 1.09000 * 109.46577 * 149.98142 * 1 2 3 26 26 H 1.07999 * 119.91292 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.08285 * 180.02562 * 4 3 2 28 28 H 1.07997 * 119.99897 * 185.23444 * 6 5 4 29 29 H 0.96992 * 120.00150 * 0.02562 * 14 13 11 30 30 H 1.09004 * 115.54973 * 274.41448 * 19 9 8 31 31 H 1.09003 * 117.49781 * 359.97438 * 20 19 9 32 32 H 1.09003 * 117.49789 * 145.02103 * 20 19 9 33 33 H 1.09002 * 117.49810 * 214.98078 * 21 19 9 34 34 H 1.09001 * 117.49764 * 359.97438 * 21 19 9 35 35 H 1.07997 * 119.91916 * 180.23139 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2011 0.0000 4 6 3.5741 1.2095 0.0005 5 6 4.2772 0.0003 0.0055 6 6 5.7488 0.0004 0.0113 7 8 6.3546 1.0463 0.1076 8 6 3.5745 -1.2086 0.0002 9 6 4.3221 -2.5172 0.0008 10 1 5.3908 -2.3249 -0.0949 11 6 4.0565 -3.2468 1.2922 12 1 3.4106 -2.8073 2.0378 13 6 4.6382 -4.4757 1.5219 14 7 5.4243 -5.0111 0.6137 15 14 4.3084 -5.3805 3.1225 16 1 3.1168 -6.2521 2.9621 17 1 4.0590 -4.3956 4.2057 18 1 5.4873 -6.2131 3.4724 19 6 3.8508 -3.3744 -1.1756 20 6 4.9224 -3.9560 -2.0999 21 6 4.0366 -2.8052 -2.5836 22 6 2.1954 -1.2004 0.0001 23 1 -0.3632 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3632 -0.8898 -0.5141 26 1 1.6511 2.1338 0.0004 27 1 4.1097 2.1473 0.0010 28 1 6.2892 -0.9311 -0.0703 29 1 5.5952 -4.5414 -0.2175 30 1 2.9634 -3.9796 -0.9905 31 1 5.9632 -3.7276 -1.8702 32 1 4.7398 -4.9438 -2.5232 33 1 3.2715 -3.0363 -3.3249 34 1 4.4942 -1.8198 -2.6718 35 1 1.6512 -2.1333 -0.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260110589.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:28 Heat of formation + Delta-G solvation = -12.969648 kcal Electronic energy + Delta-G solvation = -17513.209331 eV Core-core repulsion = 14861.985784 eV Total energy + Delta-G solvation = -2651.223547 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14157 -39.44000 -38.47224 -34.84877 -33.93548 -32.60151 -28.78490 -28.73419 -25.35907 -24.51015 -23.41504 -23.04817 -21.42958 -20.63598 -18.83767 -18.11710 -17.08284 -16.54624 -15.77781 -15.58671 -15.48859 -15.30200 -14.97041 -14.74868 -14.54783 -14.43023 -13.94736 -13.03029 -13.01588 -12.77060 -12.65607 -12.39971 -12.33084 -12.21325 -11.94906 -11.67628 -11.35019 -11.01739 -10.67985 -10.48719 -10.26886 -9.67669 -9.46360 -8.41360 -6.23683 -0.29595 0.56513 1.43997 1.56393 1.62817 1.80226 2.60183 2.90851 3.07010 3.25816 3.34674 3.90664 3.92757 3.98891 4.10750 4.23803 4.25655 4.31758 4.49276 4.57757 4.74834 4.76079 4.83939 4.86909 4.92468 5.04774 5.17375 5.24048 5.25929 5.27398 5.42464 5.47108 5.65074 5.80091 6.04679 6.14631 6.30593 6.37538 6.81164 7.55847 8.97051 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.008735 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.300786 B = 3204.738336 C = 3435.588415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.049 4.049 3 C -0.152 4.152 4 C -0.062 4.062 5 C -0.233 4.233 6 C 0.391 3.609 7 O -0.501 6.501 8 C 0.019 3.981 9 C 0.081 3.919 10 H 0.016 0.984 11 C -0.604 4.604 12 H 0.040 0.960 13 C -0.015 4.015 14 N -0.938 5.938 15 Si 1.104 2.896 16 H -0.276 1.276 17 H -0.280 1.280 18 H -0.287 1.287 19 C -0.124 4.124 20 C -0.173 4.173 21 C -0.174 4.174 22 C -0.139 4.139 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.156 0.844 27 H 0.133 0.867 28 H 0.104 0.896 29 H 0.284 0.716 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.750 7.723 -3.653 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.049 4.049 3 C -0.170 4.170 4 C -0.080 4.080 5 C -0.234 4.234 6 C 0.254 3.746 7 O -0.379 6.379 8 C 0.018 3.982 9 C 0.063 3.937 10 H 0.034 0.966 11 C -0.641 4.641 12 H 0.059 0.941 13 C -0.217 4.217 14 N -0.577 5.577 15 Si 0.928 3.072 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.213 1.213 19 C -0.143 4.143 20 C -0.210 4.210 21 C -0.211 4.211 22 C -0.157 4.157 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.090 0.910 26 H 0.174 0.826 27 H 0.151 0.849 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.075 6.893 -2.786 10.976 hybrid contribution 0.066 0.839 -0.737 1.119 sum -8.009 7.732 -3.524 11.676 Atomic orbital electron populations 1.20912 0.88517 1.04103 1.03439 1.20573 0.97992 0.92341 0.93992 1.21199 0.93215 0.98633 1.03940 1.21458 0.95042 0.96750 0.94739 1.20679 0.95854 0.94598 1.12290 1.24297 0.89548 0.92493 0.68266 1.90399 1.71987 1.37493 1.37993 1.20395 0.94596 0.93798 0.89389 1.17704 0.93643 0.88735 0.93587 0.96616 1.22062 1.33288 1.06418 1.02376 0.94148 1.26779 0.93261 0.96193 1.05433 1.70782 1.35007 1.42095 1.09767 0.83078 0.76554 0.75223 0.72347 1.20149 1.20527 1.21306 1.22368 0.99600 1.01858 0.90458 1.22773 0.95900 0.97718 1.04637 1.23037 1.02985 0.97281 0.97772 1.20931 0.93337 0.98238 1.03220 0.89947 0.89160 0.90965 0.82620 0.84901 0.87997 0.90141 0.90509 0.90463 0.89329 0.87807 0.89675 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 10.00 71.24 0.71 -1.54 16 2 C -0.05 -1.39 5.89 -19.78 -0.12 -1.51 16 3 C -0.15 -4.13 9.68 22.23 0.22 -3.92 16 4 C -0.06 -2.00 9.60 22.58 0.22 -1.78 16 5 C -0.23 -8.92 5.87 -20.15 -0.12 -9.04 16 6 C 0.39 15.40 10.97 70.17 0.77 16.17 16 7 O -0.50 -20.86 17.18 -2.95 -0.05 -20.91 16 8 C 0.02 0.75 4.42 -19.56 -0.09 0.67 16 9 C 0.08 3.76 1.72 -12.29 -0.02 3.74 16 10 H 0.02 0.78 5.09 -2.39 -0.01 0.77 16 11 C -0.60 -31.77 8.30 25.60 0.21 -31.56 16 12 H 0.04 2.17 7.72 -2.91 -0.02 2.15 16 13 C -0.01 -0.80 5.30 84.66 0.45 -0.35 16 14 N -0.94 -53.03 13.38 21.45 0.29 -52.74 16 15 Si 1.10 48.83 29.90 68.60 2.05 50.88 16 16 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 19 C -0.12 -5.29 3.64 -10.79 -0.04 -5.33 16 20 C -0.17 -6.88 8.14 30.62 0.25 -6.63 16 21 C -0.17 -6.07 9.87 30.62 0.30 -5.77 16 22 C -0.14 -5.01 8.60 22.22 0.19 -4.82 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.09 1.35 8.08 -2.39 -0.02 1.33 16 25 H 0.07 1.39 8.08 -2.39 -0.02 1.38 16 26 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 27 H 0.13 3.98 7.66 -2.91 -0.02 3.96 16 28 H 0.10 4.04 5.94 -2.91 -0.02 4.02 16 29 H 0.28 15.40 3.55 -92.71 -0.33 15.07 16 30 H 0.08 3.50 8.11 -2.38 -0.02 3.48 16 31 H 0.08 3.22 7.42 -2.39 -0.02 3.20 16 32 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.12 4.37 7.92 -2.91 -0.02 4.34 16 Total: -1.00 -61.63 293.99 6.74 -54.88 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 1.52 Total: 19.57 kcal Atomic # 6 Polarization: -54.61 SS G_CDS: 2.94 Total: -51.68 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.29 Total: -52.74 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.05 Total: -20.91 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.05 Total: 50.88 kcal Total: -61.63 6.74 -54.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110589.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.915 kcal (2) G-P(sol) polarization free energy of solvation -61.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds