Wall clock time and date at job start Mon Mar 30 2020 05:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33991 * 126.90616 * 2 1 4 4 O 1.34449 * 110.15654 * 180.02562 * 3 2 1 5 5 C 1.34812 * 110.88824 * 359.97438 * 4 3 2 6 6 C 1.38939 * 133.49801 * 180.27398 * 5 4 3 7 7 C 1.37855 * 119.81550 * 180.21990 * 6 5 4 8 8 C 1.50705 * 119.65546 * 179.73023 * 7 6 5 9 9 C 1.53005 * 109.46674 * 66.68564 * 8 7 6 10 10 C 1.52997 * 109.47129 * 306.68702 * 8 7 6 11 11 C 1.50699 * 109.46892 * 186.68034 * 8 7 6 12 12 H 1.07994 * 120.00106 * 242.32616 * 11 8 7 13 13 C 1.37881 * 119.99689 * 62.60378 * 11 8 7 14 14 N 1.31512 * 119.99950 * 185.64671 * 13 11 8 15 15 Si 1.86800 * 119.99901 * 5.64532 * 13 11 8 16 16 H 1.48498 * 109.47273 * 90.70307 * 15 13 11 17 17 H 1.48508 * 109.46841 * 210.69910 * 15 13 11 18 18 H 1.48500 * 109.47281 * 330.69648 * 15 13 11 19 19 C 1.38740 * 120.68551 * 359.45444 * 7 6 5 20 20 C 1.36742 * 120.41704 * 0.29917 * 19 7 6 21 21 C 1.39402 * 119.71565 * 359.97438 * 20 19 7 22 22 H 1.08995 * 109.47154 * 269.97891 * 1 2 3 23 23 H 1.09005 * 109.47114 * 29.98176 * 1 2 3 24 24 H 1.09000 * 109.46750 * 149.97963 * 1 2 3 25 25 H 1.08006 * 124.92438 * 0.02562 * 3 2 1 26 26 H 1.07997 * 120.09324 * 359.97080 * 6 5 4 27 27 H 1.08997 * 109.46726 * 179.97438 * 9 8 7 28 28 H 1.09003 * 109.46906 * 299.99556 * 9 8 7 29 29 H 1.08995 * 109.47191 * 60.00011 * 9 8 7 30 30 H 1.08999 * 109.46826 * 294.85708 * 10 8 7 31 31 H 1.08999 * 109.47610 * 54.85099 * 10 8 7 32 32 H 1.09002 * 109.47129 * 174.86294 * 10 8 7 33 33 H 0.96998 * 120.00148 * 180.02562 * 14 13 11 34 34 H 1.07995 * 119.79061 * 180.27540 * 19 7 6 35 35 H 1.08002 * 120.13772 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3117 1.0714 0.0000 4 8 3.5991 0.6839 -0.0006 5 6 3.6964 -0.6607 -0.0004 6 6 4.7706 -1.5418 0.0040 7 6 4.5421 -2.9012 -0.0018 8 6 5.7100 -3.8537 -0.0031 9 6 6.4633 -3.7387 1.3237 10 6 6.6523 -3.5036 -1.1565 11 6 5.2077 -5.2641 -0.1750 12 1 5.3734 -5.9948 0.6028 13 6 4.5417 -5.6230 -1.3277 14 7 4.0066 -6.8197 -1.4324 15 14 4.3996 -4.4093 -2.7406 16 1 5.5493 -4.5871 -3.6634 17 1 3.1325 -4.6522 -3.4761 18 1 4.4037 -3.0241 -2.2056 19 6 3.2481 -3.4017 -0.0007 20 6 2.1771 -2.5516 0.0000 21 6 2.3885 -1.1737 0.0002 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5136 24 1 -0.3633 -0.8898 -0.5142 25 1 1.9749 2.0976 0.0004 26 1 5.7819 -1.1627 0.0080 27 1 7.3077 -4.4279 1.3229 28 1 6.8265 -2.7186 1.4480 29 1 5.7920 -3.9881 2.1454 30 1 6.1436 -3.6733 -2.1055 31 1 6.9435 -2.4558 -1.0827 32 1 7.5410 -4.1325 -1.1033 33 1 3.5383 -7.0724 -2.2435 34 1 3.0857 -4.4694 -0.0008 35 1 1.1717 -2.9460 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260110698.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:06 Heat of formation + Delta-G solvation = 14.728748 kcal Electronic energy + Delta-G solvation = -17822.864812 eV Core-core repulsion = 15172.842357 eV Total energy + Delta-G solvation = -2650.022455 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.31069 -40.04779 -36.60543 -34.67873 -33.91782 -31.36974 -29.92527 -28.20555 -27.96866 -27.23849 -24.03563 -23.40762 -21.08743 -20.71094 -18.69214 -18.05383 -17.50123 -17.05709 -16.78742 -16.21817 -15.12113 -14.94902 -14.79165 -14.58059 -14.32068 -14.12196 -13.97393 -13.75398 -13.45920 -13.23057 -12.75946 -12.50527 -12.36659 -12.17389 -12.05619 -11.99220 -11.50975 -11.14008 -10.99426 -10.61098 -10.49203 -9.36126 -8.81890 -8.31930 -6.32135 0.08756 0.51153 1.27508 1.36923 1.42993 1.50736 1.95409 2.29953 2.86436 3.05050 3.62114 3.75170 4.05302 4.16376 4.29257 4.42121 4.51155 4.54399 4.60467 4.70951 4.78500 4.85312 4.92840 4.95935 5.01486 5.06661 5.11837 5.22121 5.27682 5.45436 5.52795 5.57191 5.67992 5.71533 5.84028 6.00421 6.32466 6.36504 6.75667 7.32837 8.83048 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.026840 B = 0.009128 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.952841 B = 3066.591152 C = 3490.810020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.195 4.195 3 C -0.003 4.003 4 O -0.206 6.206 5 C 0.032 3.968 6 C -0.130 4.130 7 C -0.021 4.021 8 C 0.058 3.942 9 C -0.113 4.113 10 C -0.140 4.140 11 C -0.501 4.501 12 H 0.044 0.956 13 C 0.041 3.959 14 N -0.939 5.939 15 Si 0.921 3.079 16 H -0.285 1.285 17 H -0.315 1.315 18 H -0.228 1.228 19 C -0.138 4.138 20 C -0.091 4.091 21 C -0.162 4.162 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.058 0.942 25 H 0.251 0.749 26 H 0.142 0.858 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.264 0.736 34 H 0.125 0.875 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 16.544 2.425 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.196 4.196 3 C -0.066 4.066 4 O -0.108 6.108 5 C -0.015 4.015 6 C -0.148 4.148 7 C -0.022 4.022 8 C 0.057 3.943 9 C -0.170 4.170 10 C -0.197 4.197 11 C -0.539 4.539 12 H 0.062 0.938 13 C -0.158 4.158 14 N -0.579 5.579 15 Si 0.752 3.248 16 H -0.213 1.213 17 H -0.245 1.245 18 H -0.152 1.152 19 C -0.156 4.156 20 C -0.109 4.109 21 C -0.163 4.163 22 H 0.096 0.904 23 H 0.112 0.888 24 H 0.077 0.923 25 H 0.267 0.733 26 H 0.160 0.840 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.491 16.595 2.338 17.118 hybrid contribution -0.328 -0.563 -0.935 1.139 sum -3.819 16.032 1.403 16.540 Atomic orbital electron populations 1.20196 0.86591 1.03508 1.02999 1.21543 0.98175 0.90393 1.09516 1.24519 0.78649 1.01010 1.02457 1.83944 1.29756 1.20268 1.76878 1.19745 0.95851 0.81679 1.04193 1.19893 0.97099 0.90425 1.07371 1.20281 0.96195 0.92432 0.93302 1.17693 0.90209 0.91545 0.94835 1.21622 0.99065 1.00969 0.95339 1.22222 0.99429 1.01053 0.96958 1.21062 1.35153 0.94934 1.02747 0.93810 1.25536 0.94354 0.95791 1.00076 1.70022 1.37650 1.21624 1.28592 0.86511 0.74988 0.83136 0.80208 1.21261 1.24482 1.15207 1.21241 0.92678 1.00980 1.00689 1.20440 0.99425 0.91063 0.99974 1.20146 0.93554 0.94643 1.07995 0.90365 0.88832 0.92294 0.73294 0.84000 0.92531 0.91845 0.94212 0.96051 0.91445 0.91779 0.92698 0.85723 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.43 71.24 0.74 -0.76 16 2 C -0.19 -5.40 6.35 -18.59 -0.12 -5.52 16 3 C 0.00 -0.07 11.89 66.85 0.79 0.73 16 4 O -0.21 -6.54 10.58 -8.96 -0.09 -6.63 16 5 C 0.03 1.20 7.42 22.99 0.17 1.37 16 6 C -0.13 -4.99 8.57 22.35 0.19 -4.79 16 7 C -0.02 -0.93 2.54 -19.83 -0.05 -0.98 16 8 C 0.06 2.56 0.59 -53.67 -0.03 2.53 16 9 C -0.11 -4.25 8.28 71.98 0.60 -3.65 16 10 C -0.14 -5.67 7.70 71.98 0.55 -5.12 16 11 C -0.50 -27.18 7.45 25.60 0.19 -26.99 16 12 H 0.04 2.63 7.99 -2.91 -0.02 2.60 16 13 C 0.04 2.30 4.05 84.66 0.34 2.64 16 14 N -0.94 -57.35 13.96 21.45 0.30 -57.05 16 15 Si 0.92 45.96 22.10 68.60 1.52 47.48 16 16 H -0.28 -13.94 7.03 99.48 0.70 -13.24 16 17 H -0.32 -16.25 7.11 99.48 0.71 -15.54 16 18 H -0.23 -10.79 4.64 99.48 0.46 -10.33 16 19 C -0.14 -6.27 6.70 22.04 0.15 -6.12 16 20 C -0.09 -3.63 10.05 22.20 0.22 -3.41 16 21 C -0.16 -5.98 6.38 -20.21 -0.13 -6.11 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.25 3.00 8.06 -2.91 -0.02 2.98 16 26 H 0.14 4.73 7.01 -2.91 -0.02 4.71 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 2.00 7.78 -2.39 -0.02 1.98 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.02 0.93 2.54 -2.39 -0.01 0.93 16 31 H 0.07 2.28 6.83 -2.39 -0.02 2.26 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.13 6.44 5.49 -2.91 -0.02 6.43 16 35 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -66.79 274.72 6.18 -60.61 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.83 Total: 11.78 kcal Atomic # 6 Polarization: -59.81 SS G_CDS: 3.63 Total: -56.19 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.30 Total: -57.05 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.09 Total: -6.63 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.52 Total: 47.48 kcal Total: -66.79 6.18 -60.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110698.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.342 kcal (2) G-P(sol) polarization free energy of solvation -66.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds