Wall clock time and date at job start Mon Mar 30 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86806 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47355 * 239.99983 * 3 2 1 5 5 H 1.48501 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47111 * 119.99967 * 3 2 1 7 7 C 1.38816 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00410 * 199.56174 * 7 2 1 9 9 N 1.36916 * 119.99338 * 19.56540 * 7 2 1 10 10 C 1.38831 * 120.00315 * 41.41123 * 9 7 2 11 11 C 1.39225 * 119.71285 * 185.01804 * 10 9 7 12 12 C 1.38310 * 119.09195 * 179.97438 * 11 10 9 13 13 C 1.50700 * 120.75033 * 179.97438 * 12 11 10 14 14 C 1.52998 * 117.50272 * 188.62174 * 13 12 11 15 15 C 1.52999 * 117.50237 * 119.99669 * 13 12 11 16 16 C 1.38888 * 118.50559 * 0.02562 * 12 11 10 17 17 C 1.38123 * 119.33699 * 359.97438 * 16 12 11 18 18 N 1.31889 * 120.86986 * 0.02562 * 17 16 12 19 19 C 1.46501 * 119.99761 * 221.40598 * 9 7 2 20 20 C 1.53007 * 117.49860 * 7.41638 * 19 9 7 21 21 C 1.52999 * 117.50016 * 298.76086 * 19 9 7 22 22 H 0.97004 * 119.99907 * 354.93284 * 1 2 3 23 23 H 1.07996 * 120.45660 * 0.02562 * 11 10 9 24 24 H 1.09006 * 115.54440 * 334.33149 * 13 12 11 25 25 H 1.09004 * 117.49696 * 0.02562 * 14 13 12 26 26 H 1.09001 * 117.49966 * 145.01669 * 14 13 12 27 27 H 1.08994 * 117.50578 * 214.98195 * 15 13 12 28 28 H 1.09004 * 117.49471 * 0.02562 * 15 13 12 29 29 H 1.08001 * 120.32565 * 180.02562 * 16 12 11 30 30 H 1.08003 * 119.56417 * 180.30331 * 17 16 12 31 31 H 1.09004 * 115.55002 * 153.08313 * 19 9 7 32 32 H 1.09003 * 117.49637 * 0.02562 * 20 19 9 33 33 H 1.08998 * 117.50083 * 145.01784 * 20 19 9 34 34 H 1.09000 * 117.49556 * 214.98150 * 21 19 9 35 35 H 1.09003 * 117.49998 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0098 -1.2021 0.0005 8 1 3.0430 -1.2290 0.3137 9 7 1.3844 -2.3538 -0.3961 10 6 0.5396 -2.3410 -1.4977 11 6 -0.1742 -3.4883 -1.8332 12 6 -1.0125 -3.4611 -2.9330 13 6 -1.8022 -4.6816 -3.3302 14 6 -2.5468 -4.6375 -4.6661 15 6 -3.3272 -4.5600 -3.3524 16 6 -1.1093 -2.2840 -3.6637 17 6 -0.3720 -1.1829 -3.2740 18 7 0.4198 -1.2371 -2.2206 19 6 1.6068 -3.5995 0.3421 20 6 2.4063 -3.5162 1.6440 21 6 3.0362 -4.1424 0.3974 22 1 -0.4850 0.8368 0.0742 23 1 -0.0753 -4.3869 -1.2424 24 1 -1.3779 -5.6370 -3.0214 25 1 -2.4651 -3.7257 -5.2579 26 1 -2.6123 -5.5639 -5.2366 27 1 -3.9063 -5.4354 -3.0586 28 1 -3.7593 -3.5970 -3.0800 29 1 -1.7553 -2.2299 -4.5275 30 1 -0.4483 -0.2642 -3.8367 31 1 0.7944 -4.3248 0.2959 32 1 2.7663 -2.5344 1.9515 33 1 2.1201 -4.1869 2.4542 34 1 3.1642 -5.2248 0.3878 35 1 3.8111 -3.5729 -0.1158 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260120060.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:02 Heat of formation + Delta-G solvation = 112.189269 kcal Electronic energy + Delta-G solvation = -17459.830065 eV Core-core repulsion = 14846.326567 eV Total energy + Delta-G solvation = -2613.503498 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.24105 -37.50852 -36.29123 -33.55619 -31.38856 -30.58643 -28.34925 -25.08517 -23.06322 -22.61413 -21.97988 -21.65572 -20.20357 -19.66423 -17.22898 -16.13519 -15.77744 -14.93309 -14.67211 -14.49958 -13.94917 -13.57294 -13.23988 -12.94904 -12.66762 -12.13169 -11.52957 -11.31624 -11.22712 -11.16961 -10.91769 -10.83099 -10.61686 -10.39457 -10.25870 -10.08866 -9.97337 -9.64950 -8.77933 -8.45959 -8.13178 -7.70831 -6.45861 -6.01479 -3.74999 2.52656 2.69123 3.30268 3.35519 3.39912 4.18101 4.21639 4.58539 4.69869 4.98727 5.15618 5.20336 5.31409 5.49561 5.56282 5.63227 5.76157 5.79868 5.85972 5.89021 6.04675 6.19779 6.22142 6.26000 6.36061 6.45252 6.48687 6.64711 6.79105 6.90399 6.95908 7.21219 7.50732 7.60366 7.85824 8.20361 8.87571 9.23534 9.72234 10.01073 10.93191 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.008515 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.282809 B = 3287.587088 C = 4233.427758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.079 3.921 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.408 5.408 10 C 0.418 3.582 11 C -0.267 4.267 12 C 0.018 3.982 13 C -0.106 4.106 14 C -0.178 4.178 15 C -0.171 4.171 16 C -0.293 4.293 17 C 0.150 3.850 18 N -0.491 5.491 19 C 0.089 3.911 20 C -0.176 4.176 21 C -0.206 4.206 22 H 0.265 0.735 23 H 0.108 0.892 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 -7.321 -3.552 8.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.132 4.132 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.206 1.206 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.100 5.100 10 C 0.181 3.819 11 C -0.293 4.293 12 C 0.010 3.990 13 C -0.124 4.124 14 C -0.215 4.215 15 C -0.208 4.208 16 C -0.318 4.318 17 C -0.014 4.014 18 N -0.208 5.208 19 C -0.017 4.017 20 C -0.214 4.214 21 C -0.245 4.245 22 H 0.075 0.925 23 H 0.126 0.874 24 H 0.123 0.877 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.145 0.855 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.543 -6.460 -3.090 7.325 hybrid contribution -0.255 0.153 -0.156 0.335 sum -1.797 -6.307 -3.246 7.317 Atomic orbital electron populations 1.69875 1.06554 1.27481 1.42374 1.25129 0.94737 0.99167 0.94151 0.86238 0.79264 0.81797 0.78453 1.19835 1.21241 1.20609 1.18843 0.95167 0.84126 1.48246 0.90507 1.41463 1.41990 1.05820 1.20694 1.18031 0.90088 0.87923 0.85892 1.20875 1.06388 0.99534 1.02522 1.18801 0.93822 0.92560 0.93796 1.20960 0.93003 0.97643 1.00829 1.22992 1.04761 1.03029 0.90723 1.22943 0.93511 1.03048 1.01340 1.21125 1.10114 0.95304 1.05226 1.22121 0.91293 0.96193 0.91805 1.67285 1.21605 1.26147 1.05752 1.21548 0.93062 0.90323 0.96815 1.23135 1.04538 1.02741 0.90941 1.23343 0.98883 0.99257 1.03057 0.92514 0.87403 0.87727 0.88311 0.89174 0.89104 0.88638 0.87735 0.85526 0.87604 0.87467 0.89671 0.89703 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.79 11.62 55.49 0.64 -23.15 16 2 C 0.08 2.15 4.24 -17.45 -0.07 2.07 16 3 Si 0.92 21.49 29.60 -169.99 -5.03 16.45 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.34 -9.04 7.88 -15.07 -0.12 -9.16 16 8 H 0.08 2.01 7.31 -52.49 -0.38 1.63 16 9 N -0.41 -10.38 2.95 -107.96 -0.32 -10.70 16 10 C 0.42 10.74 6.54 -155.07 -1.01 9.73 16 11 C -0.27 -5.99 9.06 -39.19 -0.36 -6.35 16 12 C 0.02 0.36 5.64 -104.35 -0.59 -0.23 16 13 C -0.11 -1.69 6.07 -91.77 -0.56 -2.25 16 14 C -0.18 -2.37 9.88 -26.73 -0.26 -2.63 16 15 C -0.17 -2.37 10.18 -26.73 -0.27 -2.65 16 16 C -0.29 -5.95 9.38 -39.38 -0.37 -6.31 16 17 C 0.15 3.41 11.17 -17.57 -0.20 3.21 16 18 N -0.49 -12.95 7.23 -12.43 -0.09 -13.04 16 19 C 0.09 1.87 5.99 -67.93 -0.41 1.46 16 20 C -0.18 -3.25 9.80 -26.69 -0.26 -3.51 16 21 C -0.21 -3.68 10.29 -26.70 -0.27 -3.95 16 22 H 0.26 7.32 8.32 -40.82 -0.34 6.98 16 23 H 0.11 2.21 6.05 -52.49 -0.32 1.89 16 24 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 25 H 0.10 1.33 6.25 -51.93 -0.32 1.00 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.10 1.83 6.16 -52.49 -0.32 1.51 16 30 H 0.13 2.54 8.06 -52.48 -0.42 2.12 16 31 H 0.11 2.06 6.28 -51.93 -0.33 1.73 16 32 H 0.11 2.17 6.79 -51.93 -0.35 1.82 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 291.08 15.07 4.39 4.39 Total: -1.00 -30.15 291.08 -9.71 -39.86 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.55 Total: 6.76 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -4.75 Total: -20.57 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.24 Total: -46.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.15 -9.71 -39.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260120060.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.047 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds