Wall clock time and date at job start Mon Mar 30 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86806 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47355 * 239.99983 * 3 2 1 5 5 H 1.48501 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47111 * 119.99967 * 3 2 1 7 7 C 1.38816 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00410 * 199.56174 * 7 2 1 9 9 N 1.36916 * 119.99338 * 19.56540 * 7 2 1 10 10 C 1.38831 * 120.00315 * 41.41123 * 9 7 2 11 11 C 1.39225 * 119.71285 * 185.01804 * 10 9 7 12 12 C 1.38310 * 119.09195 * 179.97438 * 11 10 9 13 13 C 1.50700 * 120.75033 * 179.97438 * 12 11 10 14 14 C 1.52998 * 117.50272 * 188.62174 * 13 12 11 15 15 C 1.52999 * 117.50237 * 119.99669 * 13 12 11 16 16 C 1.38888 * 118.50559 * 0.02562 * 12 11 10 17 17 C 1.38123 * 119.33699 * 359.97438 * 16 12 11 18 18 N 1.31889 * 120.86986 * 0.02562 * 17 16 12 19 19 C 1.46501 * 119.99761 * 221.40598 * 9 7 2 20 20 C 1.53007 * 117.49860 * 7.41638 * 19 9 7 21 21 C 1.52999 * 117.50016 * 298.76086 * 19 9 7 22 22 H 0.97004 * 119.99907 * 354.93284 * 1 2 3 23 23 H 1.07996 * 120.45660 * 0.02562 * 11 10 9 24 24 H 1.09006 * 115.54440 * 334.33149 * 13 12 11 25 25 H 1.09004 * 117.49696 * 0.02562 * 14 13 12 26 26 H 1.09001 * 117.49966 * 145.01669 * 14 13 12 27 27 H 1.08994 * 117.50578 * 214.98195 * 15 13 12 28 28 H 1.09004 * 117.49471 * 0.02562 * 15 13 12 29 29 H 1.08001 * 120.32565 * 180.02562 * 16 12 11 30 30 H 1.08003 * 119.56417 * 180.30331 * 17 16 12 31 31 H 1.09004 * 115.55002 * 153.08313 * 19 9 7 32 32 H 1.09003 * 117.49637 * 0.02562 * 20 19 9 33 33 H 1.08998 * 117.50083 * 145.01784 * 20 19 9 34 34 H 1.09000 * 117.49556 * 214.98150 * 21 19 9 35 35 H 1.09003 * 117.49998 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0098 -1.2021 0.0005 8 1 3.0430 -1.2290 0.3137 9 7 1.3844 -2.3538 -0.3961 10 6 0.5396 -2.3410 -1.4977 11 6 -0.1742 -3.4883 -1.8332 12 6 -1.0125 -3.4611 -2.9330 13 6 -1.8022 -4.6816 -3.3302 14 6 -2.5468 -4.6375 -4.6661 15 6 -3.3272 -4.5600 -3.3524 16 6 -1.1093 -2.2840 -3.6637 17 6 -0.3720 -1.1829 -3.2740 18 7 0.4198 -1.2371 -2.2206 19 6 1.6068 -3.5995 0.3421 20 6 2.4063 -3.5162 1.6440 21 6 3.0362 -4.1424 0.3974 22 1 -0.4850 0.8368 0.0742 23 1 -0.0753 -4.3869 -1.2424 24 1 -1.3779 -5.6370 -3.0214 25 1 -2.4651 -3.7257 -5.2579 26 1 -2.6123 -5.5639 -5.2366 27 1 -3.9063 -5.4354 -3.0586 28 1 -3.7593 -3.5970 -3.0800 29 1 -1.7553 -2.2299 -4.5275 30 1 -0.4483 -0.2642 -3.8367 31 1 0.7944 -4.3248 0.2959 32 1 2.7663 -2.5344 1.9515 33 1 2.1201 -4.1869 2.4542 34 1 3.1642 -5.2248 0.3878 35 1 3.8111 -3.5729 -0.1158 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260120060.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:01 Heat of formation + Delta-G solvation = 97.209215 kcal Electronic energy + Delta-G solvation = -17460.479649 eV Core-core repulsion = 14846.326567 eV Total energy + Delta-G solvation = -2614.153082 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.90888 -39.00837 -37.69427 -35.31450 -33.25709 -32.24594 -30.12670 -26.94250 -24.59184 -24.24307 -23.12636 -23.09208 -21.78316 -21.33067 -18.91841 -17.84864 -17.32681 -16.53190 -16.45083 -16.05330 -15.57329 -15.16192 -14.71808 -14.63987 -14.28092 -13.86484 -13.21038 -12.99448 -12.88805 -12.65489 -12.35587 -12.33330 -12.15091 -12.07306 -11.81365 -11.67589 -11.20570 -11.16281 -10.67378 -10.16491 -9.76281 -9.51543 -8.39567 -7.92533 -5.77361 0.83653 1.00823 1.39743 1.47245 1.50440 2.32563 2.92226 3.00792 3.10648 3.26409 3.69792 3.78609 4.01322 4.04695 4.16280 4.23575 4.26794 4.33248 4.36532 4.66154 4.69853 4.81831 4.83427 4.87797 4.99132 5.07514 5.20432 5.23239 5.29406 5.34000 5.41695 5.47055 5.61025 5.86598 6.13287 6.31496 6.96225 7.33422 7.82745 8.19093 8.92026 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.008515 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.282809 B = 3287.587088 C = 4233.427758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.037 3.963 3 Si 0.969 3.031 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.344 4.344 8 H 0.072 0.928 9 N -0.433 5.433 10 C 0.393 3.607 11 C -0.281 4.281 12 C 0.020 3.980 13 C -0.132 4.132 14 C -0.158 4.158 15 C -0.163 4.163 16 C -0.283 4.283 17 C 0.125 3.875 18 N -0.535 5.535 19 C 0.057 3.943 20 C -0.168 4.168 21 C -0.182 4.182 22 H 0.258 0.742 23 H 0.122 0.878 24 H 0.119 0.881 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.711 -9.331 -4.421 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.170 4.170 3 Si 0.795 3.205 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.472 4.472 8 H 0.089 0.911 9 N -0.127 5.127 10 C 0.156 3.844 11 C -0.307 4.307 12 C 0.013 3.987 13 C -0.150 4.150 14 C -0.195 4.195 15 C -0.200 4.200 16 C -0.307 4.307 17 C -0.037 4.037 18 N -0.253 5.253 19 C -0.049 4.049 20 C -0.206 4.206 21 C -0.221 4.221 22 H 0.067 0.933 23 H 0.140 0.860 24 H 0.137 0.863 25 H 0.115 0.885 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.099 0.901 29 H 0.154 0.846 30 H 0.160 0.840 31 H 0.135 0.865 32 H 0.101 0.899 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.221 -8.481 -3.967 9.623 hybrid contribution -0.088 0.668 0.000 0.673 sum -2.309 -7.814 -3.967 9.062 Atomic orbital electron populations 1.69999 1.07799 1.27358 1.44885 1.25793 0.95287 1.01778 0.94119 0.85394 0.78108 0.78538 0.78447 1.20611 1.21302 1.19083 1.18961 0.95053 0.85398 1.47774 0.91085 1.41667 1.42727 1.06668 1.21594 1.18511 0.90663 0.88848 0.86372 1.21101 1.06753 0.99180 1.03674 1.19302 0.92864 0.94198 0.92377 1.21005 0.93953 0.96151 1.03888 1.23116 1.02054 1.04400 0.89896 1.23021 0.91842 1.03530 1.01623 1.21464 1.09113 0.94548 1.05619 1.22560 0.91620 0.97888 0.91611 1.67208 1.23438 1.27372 1.07269 1.21822 0.95035 0.89529 0.98495 1.23164 1.03539 1.02409 0.91461 1.23342 0.96166 1.01026 1.01564 0.93270 0.85985 0.86333 0.88503 0.86257 0.86474 0.90061 0.84619 0.83993 0.86484 0.89894 0.86359 0.85951 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.43 11.62 21.65 0.25 -51.18 16 2 C 0.04 2.07 4.24 84.87 0.36 2.43 16 3 Si 0.97 45.47 29.60 68.60 2.03 47.50 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.34 -19.10 7.88 84.04 0.66 -18.44 16 8 H 0.07 3.87 7.31 -2.91 -0.02 3.85 16 9 N -0.43 -22.56 2.95 -495.46 -1.46 -24.02 16 10 C 0.39 20.65 6.54 133.11 0.87 21.52 16 11 C -0.28 -12.59 9.06 22.52 0.20 -12.39 16 12 C 0.02 0.79 5.64 -19.69 -0.11 0.68 16 13 C -0.13 -3.81 6.07 -11.54 -0.07 -3.88 16 14 C -0.16 -3.53 9.88 30.59 0.30 -3.23 16 15 C -0.16 -3.94 10.18 30.59 0.31 -3.63 16 16 C -0.28 -11.16 9.38 22.40 0.21 -10.95 16 17 C 0.13 5.76 11.17 84.66 0.95 6.71 16 18 N -0.54 -29.01 7.23 -193.24 -1.40 -30.41 16 19 C 0.06 2.37 5.99 44.99 0.27 2.64 16 20 C -0.17 -6.07 9.80 30.62 0.30 -5.77 16 21 C -0.18 -6.25 10.29 30.62 0.32 -5.94 16 22 H 0.26 14.86 8.32 -92.71 -0.77 14.09 16 23 H 0.12 4.94 6.05 -2.91 -0.02 4.92 16 24 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 25 H 0.10 2.22 6.25 -2.38 -0.01 2.20 16 26 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.14 4.40 6.16 -2.91 -0.02 4.39 16 30 H 0.14 5.77 8.06 -2.91 -0.02 5.75 16 31 H 0.12 4.48 6.28 -2.38 -0.01 4.47 16 32 H 0.08 3.41 6.79 -2.39 -0.02 3.39 16 33 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 34 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -67.68 291.08 5.08 -62.60 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 1.09 Total: 25.77 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 4.57 Total: -30.26 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -2.61 Total: -105.61 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -67.68 5.08 -62.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260120060.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.809 kcal (2) G-P(sol) polarization free energy of solvation -67.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds