Wall clock time and date at job start Mon Mar 30 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.66720 * 2 1 4 4 C 1.54704 * 110.75206 * 236.77251 * 2 1 3 5 5 C 1.51641 * 101.94463 * 216.26932 * 4 2 1 6 6 C 1.37734 * 132.16819 * 195.61666 * 5 4 2 7 7 C 1.38352 * 119.97988 * 179.10306 * 6 5 4 8 8 C 1.38285 * 119.76395 * 359.97438 * 7 6 5 9 9 C 1.50708 * 119.82432 * 180.21058 * 8 7 6 10 10 C 1.50703 * 115.54848 * 233.95499 * 9 8 7 11 11 H 1.08002 * 119.99069 * 262.92728 * 10 9 8 12 12 C 1.37873 * 120.00222 * 82.92634 * 10 9 8 13 13 N 1.31512 * 120.00002 * 353.59601 * 12 10 9 14 14 Si 1.86799 * 120.00063 * 173.60058 * 12 10 9 15 15 H 1.48508 * 109.47044 * 59.99544 * 14 12 10 16 16 H 1.48496 * 109.47434 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47046 * 300.00224 * 14 12 10 18 18 C 1.52996 * 117.49966 * 88.27976 * 9 8 7 19 19 C 1.52998 * 117.49702 * 19.61737 * 9 8 7 20 20 C 1.37930 * 120.35548 * 0.19036 * 8 7 6 21 21 C 1.38885 * 107.04432 * 15.14463 * 5 4 2 22 22 O 1.36135 * 111.22170 * 1.42883 * 21 5 4 23 23 H 1.09001 * 109.47054 * 183.22652 * 1 2 3 24 24 H 1.09004 * 109.47252 * 303.22609 * 1 2 3 25 25 H 1.09003 * 109.46640 * 63.22246 * 1 2 3 26 26 H 1.09002 * 110.93193 * 98.10210 * 4 2 1 27 27 H 1.08999 * 110.96767 * 334.44603 * 4 2 1 28 28 H 1.07996 * 120.01560 * 359.12247 * 6 5 4 29 29 H 1.08001 * 120.11869 * 180.02562 * 7 6 5 30 30 H 0.96999 * 120.00034 * 174.94805 * 13 12 10 31 31 H 1.08995 * 117.50024 * 359.97438 * 18 9 8 32 32 H 1.09000 * 117.49822 * 145.02322 * 18 9 8 33 33 H 1.09001 * 117.49950 * 214.98006 * 19 9 8 34 34 H 1.08998 * 117.50214 * 359.97438 * 19 9 8 35 35 H 1.08001 * 119.88386 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0782 -0.7927 -1.2101 5 6 3.3080 -1.4555 -0.6202 6 6 4.3972 -2.0667 -1.2007 7 6 5.4057 -2.5820 -0.4060 8 6 5.3152 -2.4801 0.9701 9 6 6.4153 -3.0368 1.8368 10 6 5.9752 -4.0077 2.9021 11 1 5.8141 -3.6635 3.9130 12 6 5.7781 -5.3351 2.5861 13 7 5.8509 -5.7308 1.3340 14 14 5.4075 -6.5716 3.9363 15 1 4.1579 -6.1801 4.6367 16 1 5.2379 -7.9207 3.3392 17 1 6.5315 -6.5968 4.9065 18 6 7.5920 -2.1151 2.1635 19 6 7.7776 -3.2756 1.1827 20 6 4.2237 -1.8715 1.5537 21 6 3.2019 -1.3544 0.7609 22 8 2.0431 -0.7380 1.1223 23 1 -0.3633 -1.0260 0.0578 24 1 -0.3634 0.5631 0.8597 25 1 -0.3633 0.4630 -0.9175 26 1 2.3504 -0.1213 -2.0245 27 1 1.3577 -1.5381 -1.5468 28 1 4.4643 -2.1435 -2.2758 29 1 6.2610 -3.0614 -0.8589 30 1 5.7853 -6.6744 1.1189 31 1 7.5708 -1.1064 1.7513 32 1 8.0481 -2.2113 3.1489 33 1 8.3557 -4.1347 1.5231 34 1 7.8781 -3.0306 0.1253 35 1 4.1611 -1.7957 2.6292 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260133096.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:33 Heat of formation + Delta-G solvation = -3.425323 kcal Electronic energy + Delta-G solvation = -17320.498472 eV Core-core repulsion = 14669.688798 eV Total energy + Delta-G solvation = -2650.809674 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.96580 -39.43125 -36.94944 -34.03373 -33.93457 -31.59975 -30.84881 -27.83709 -27.16127 -23.75090 -23.16467 -22.57932 -22.46119 -20.90144 -18.63897 -17.59782 -17.33362 -16.94189 -16.56490 -16.11519 -15.36168 -14.81473 -14.73308 -14.39407 -13.99268 -13.77197 -13.55358 -13.30254 -13.05923 -12.90949 -12.86062 -12.65354 -12.38137 -12.11284 -11.96493 -11.88235 -11.60485 -11.32172 -10.92585 -10.46739 -10.16376 -9.39637 -8.82845 -8.10592 -6.23911 0.58681 0.61680 1.40322 1.41243 1.48273 2.38147 2.41831 2.90576 3.17840 3.54487 3.59886 3.70250 4.03120 4.14287 4.22961 4.31934 4.45835 4.57921 4.59894 4.71188 4.73761 4.77125 4.82360 4.96210 5.00475 5.00837 5.21137 5.25629 5.29621 5.38262 5.56510 5.60499 5.67680 5.71715 5.94068 6.06979 6.40074 6.45141 6.80289 7.43936 8.95956 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.025392 B = 0.007113 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.465557 B = 3935.685815 C = 4399.451694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.065 3.935 3 H 0.095 0.905 4 C -0.091 4.091 5 C -0.205 4.205 6 C -0.073 4.073 7 C -0.154 4.154 8 C 0.020 3.980 9 C 0.039 3.961 10 C -0.511 4.511 11 H 0.051 0.949 12 C 0.031 3.969 13 N -0.894 5.894 14 Si 0.945 3.055 15 H -0.278 1.278 16 H -0.282 1.282 17 H -0.268 1.268 18 C -0.181 4.181 19 C -0.154 4.154 20 C -0.152 4.152 21 C 0.083 3.917 22 O -0.329 6.329 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.094 0.906 28 H 0.147 0.853 29 H 0.120 0.880 30 H 0.260 0.740 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 10.277 -6.854 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.010 3.990 3 H 0.113 0.887 4 C -0.128 4.128 5 C -0.206 4.206 6 C -0.091 4.091 7 C -0.173 4.173 8 C 0.020 3.980 9 C 0.039 3.961 10 C -0.549 4.549 11 H 0.069 0.931 12 C -0.171 4.171 13 N -0.531 5.531 14 Si 0.770 3.230 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.218 4.218 19 C -0.191 4.191 20 C -0.171 4.171 21 C 0.038 3.962 22 O -0.245 6.245 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.112 0.888 28 H 0.164 0.836 29 H 0.137 0.863 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.045 10.130 -6.776 14.077 hybrid contribution 0.104 -1.149 0.900 1.463 sum -6.941 8.982 -5.876 12.782 Atomic orbital electron populations 1.21897 0.90254 1.03219 1.04531 1.23714 0.97103 0.95454 0.82767 0.88711 1.21846 0.93122 0.99281 0.98524 1.20986 0.99207 1.07062 0.93297 1.20469 0.91836 0.96390 1.00430 1.21036 1.00639 1.02418 0.93159 1.19407 0.94398 0.90631 0.93601 1.17772 0.85344 0.96532 0.96461 1.20596 1.47252 0.92995 0.94011 0.93130 1.25611 0.94436 0.99917 0.97092 1.70116 1.49315 1.15716 1.17925 0.85831 0.78771 0.78411 0.79964 1.20325 1.20776 1.19325 1.23037 1.04519 0.94358 0.99879 1.22533 1.02204 0.98117 0.96246 1.19998 0.93274 1.04793 0.99041 1.19594 0.86881 0.95937 0.93778 1.86784 1.34330 1.63497 1.39883 0.92456 0.91213 0.87331 0.86735 0.88790 0.83551 0.86251 0.93108 0.89444 0.89783 0.91743 0.89960 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.59 71.98 0.69 -1.85 16 2 C 0.06 1.61 4.25 31.18 0.13 1.74 16 3 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.09 -2.22 6.64 30.73 0.20 -2.02 16 5 C -0.20 -7.23 6.27 -19.53 -0.12 -7.35 16 6 C -0.07 -2.65 10.03 22.18 0.22 -2.43 16 7 C -0.15 -6.66 9.31 22.31 0.21 -6.45 16 8 C 0.02 0.97 5.24 -19.92 -0.10 0.87 16 9 C 0.04 1.98 1.58 -53.67 -0.08 1.90 16 10 C -0.51 -28.60 8.52 25.60 0.22 -28.38 16 11 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 12 C 0.03 1.74 5.40 84.65 0.46 2.19 16 13 N -0.89 -51.38 13.02 21.45 0.28 -51.10 16 14 Si 0.94 44.25 29.55 68.60 2.03 46.27 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 C -0.18 -7.87 9.94 30.62 0.30 -7.57 16 19 C -0.15 -7.15 9.12 30.62 0.28 -6.87 16 20 C -0.15 -7.18 9.45 22.45 0.21 -6.97 16 21 C 0.08 3.42 7.03 22.68 0.16 3.58 16 22 O -0.33 -12.13 10.82 -95.09 -1.03 -13.16 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.09 2.11 7.93 -2.39 -0.02 2.09 16 28 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 29 H 0.12 5.10 6.40 -2.91 -0.02 5.08 16 30 H 0.26 14.32 8.32 -92.71 -0.77 13.55 16 31 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 32 H 0.08 3.55 8.14 -2.39 -0.02 3.54 16 33 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 34 H 0.08 3.52 6.54 -2.39 -0.02 3.51 16 35 H 0.10 5.02 8.04 -2.91 -0.02 5.00 16 Total: -1.00 -64.82 295.33 5.13 -59.70 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.07 Total: 17.92 kcal Atomic # 6 Polarization: -62.40 SS G_CDS: 2.78 Total: -59.63 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.28 Total: -51.10 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -1.03 Total: -13.16 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -64.82 5.13 -59.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133096.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.273 kcal (2) G-P(sol) polarization free energy of solvation -64.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds