Wall clock time and date at job start Mon Mar 30 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00297 * 2 1 4 4 H 1.48497 * 109.47309 * 269.99806 * 3 2 1 5 5 H 1.48502 * 109.47248 * 30.00070 * 3 2 1 6 6 H 1.48500 * 109.47310 * 149.99757 * 3 2 1 7 7 C 1.37880 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00243 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46809 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47190 * 180.02562 * 10 9 7 12 12 C 1.38318 * 119.96280 * 270.02186 * 11 10 9 13 13 C 1.38264 * 120.14304 * 179.97438 * 12 11 10 14 14 C 1.38132 * 120.07484 * 359.72787 * 13 12 11 15 15 C 1.38873 * 119.92508 * 0.52265 * 14 13 12 16 16 N 1.39845 * 120.07456 * 179.74514 * 15 14 13 17 17 C 1.36437 * 125.84458 * 179.75356 * 16 15 14 18 18 N 1.28263 * 114.55081 * 179.72585 * 17 16 15 19 19 C 1.46966 * 110.20048 * 0.27630 * 18 17 16 20 20 C 1.47292 * 125.83766 * 359.94321 * 16 15 14 21 21 C 1.38087 * 119.96593 * 89.99585 * 11 10 9 22 22 H 0.97005 * 119.99559 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47278 * 59.99902 * 9 7 2 24 24 H 1.09004 * 109.46662 * 299.99474 * 9 7 2 25 25 H 1.09007 * 109.47433 * 60.00015 * 10 9 7 26 26 H 1.08996 * 109.47299 * 299.99621 * 10 9 7 27 27 H 1.07996 * 119.92507 * 359.97438 * 12 11 10 28 28 H 1.08003 * 119.95855 * 180.02562 * 13 12 11 29 29 H 1.07993 * 120.03488 * 180.27315 * 14 13 12 30 30 H 1.08002 * 122.72720 * 0.02562 * 17 16 15 31 31 H 1.08998 * 110.55134 * 118.58943 * 19 18 17 32 32 H 1.09003 * 110.54748 * 241.25600 * 19 18 17 33 33 H 1.08998 * 110.89785 * 61.73970 * 20 16 15 34 34 H 1.09002 * 110.65035 * 298.59155 * 20 16 15 35 35 H 1.08000 * 120.03290 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 6 1.1454 -5.5656 1.1979 13 6 0.4537 -6.7627 1.2017 14 6 0.1011 -7.3622 0.0082 15 6 0.4517 -6.7667 -1.1963 16 7 0.1010 -7.3737 -2.4064 17 6 0.3799 -6.8920 -3.6521 18 7 -0.0395 -7.6289 -4.6146 19 6 -0.7271 -8.8143 -4.0837 20 6 -0.6360 -8.6403 -2.5541 21 6 1.1471 -5.5641 -1.1967 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5566 0.8904 25 1 2.8719 -3.6044 0.8906 26 1 2.8717 -3.6044 -0.8894 27 1 1.4161 -5.0967 2.1324 28 1 0.1845 -7.2271 2.1389 29 1 -0.4431 -8.2950 0.0119 30 1 0.9147 -5.9679 -3.8147 31 1 -1.7684 -8.8289 -4.4057 32 1 -0.2176 -9.7251 -4.3984 33 1 -1.6308 -8.5648 -2.1151 34 1 -0.0797 -9.4633 -2.1053 35 1 1.4177 -5.0964 -2.1317 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260136089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:42 Heat of formation + Delta-G solvation = 47.292350 kcal Electronic energy + Delta-G solvation = -16523.603765 eV Core-core repulsion = 13907.286125 eV Total energy + Delta-G solvation = -2616.317640 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66666 -38.61570 -34.44918 -33.16936 -31.97772 -30.46932 -29.07584 -28.53366 -25.12623 -23.36630 -22.80713 -21.50678 -20.20586 -19.96885 -17.55743 -16.27336 -16.20751 -15.84822 -15.23587 -14.49461 -14.21253 -13.91943 -13.35136 -13.25267 -13.00588 -12.55700 -12.46753 -12.35229 -12.17567 -11.71089 -11.35719 -11.16106 -10.92233 -10.78809 -10.50235 -10.10179 -9.86153 -9.69149 -9.28499 -9.12114 -8.36677 -8.30796 -7.40015 -6.01089 -4.04388 1.51528 1.67948 2.57673 2.85800 3.31587 3.38050 3.41023 4.10728 4.27260 4.45340 4.49896 4.83739 4.91287 5.08230 5.20050 5.30415 5.34740 5.48613 5.56785 5.62331 5.65915 5.71570 5.93224 6.09411 6.26520 6.38393 6.61758 6.69734 6.76981 6.93940 7.07673 7.16865 7.56294 7.65966 7.74068 7.79248 7.98380 8.38508 9.02615 9.59933 11.09891 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029251 B = 0.004730 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.014114 B = 5918.098528 C = 6536.523419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.082 4.082 11 C -0.017 4.017 12 C -0.151 4.151 13 C -0.083 4.083 14 C -0.185 4.185 15 C 0.188 3.812 16 N -0.579 5.579 17 C 0.349 3.651 18 N -0.568 5.568 19 C 0.019 3.981 20 C 0.071 3.929 21 C -0.167 4.167 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.018 0.982 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.193 0.807 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 -16.949 -1.786 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.119 4.119 11 C -0.017 4.017 12 C -0.171 4.171 13 C -0.101 4.101 14 C -0.206 4.206 15 C 0.093 3.907 16 N -0.289 5.289 17 C 0.052 3.948 18 N -0.291 5.291 19 C -0.110 4.110 20 C -0.053 4.053 21 C -0.188 4.188 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.209 0.791 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.525 -17.002 -2.795 17.238 hybrid contribution 0.164 0.782 0.872 1.183 sum -0.361 -16.220 -1.923 16.337 Atomic orbital electron populations 1.69972 1.06077 1.26642 1.50610 1.25018 0.94826 0.99248 0.95257 0.86597 0.79845 0.83452 0.78130 1.20640 1.21236 1.19839 1.21248 0.93063 0.90933 1.50908 0.92557 1.19068 0.93620 0.90364 0.97608 1.20889 0.98430 0.91053 1.01560 1.20182 0.94363 0.95419 0.91776 1.21036 1.01776 0.96113 0.98144 1.20861 0.97052 0.95306 0.96903 1.20482 1.07124 1.01968 0.91046 1.17535 0.96541 0.92861 0.83798 1.45815 1.56101 1.22803 1.04220 1.24880 0.91955 0.97510 0.80494 1.74288 1.20553 1.06787 1.27499 1.23165 1.00953 0.96465 0.90457 1.22756 0.97303 0.86408 0.98813 1.20613 1.04110 0.94994 0.99094 0.92967 0.96428 0.96340 0.91897 0.92074 0.85951 0.86168 0.86701 0.79082 0.89401 0.89438 0.90297 0.90373 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.77 4.96 -27.88 -0.14 0.63 16 10 C -0.08 -1.64 5.28 -27.88 -0.15 -1.78 16 11 C -0.02 -0.29 5.13 -104.65 -0.54 -0.83 16 12 C -0.15 -2.40 9.70 -39.54 -0.38 -2.79 16 13 C -0.08 -1.13 10.04 -39.61 -0.40 -1.52 16 14 C -0.18 -2.48 9.50 -39.39 -0.37 -2.85 16 15 C 0.19 2.73 6.64 -83.72 -0.56 2.18 16 16 N -0.58 -7.50 3.23 -114.78 -0.37 -7.87 16 17 C 0.35 4.52 11.59 -90.91 -1.05 3.47 16 18 N -0.57 -7.67 11.60 -61.71 -0.72 -8.39 16 19 C 0.02 0.20 8.05 -3.15 -0.03 0.18 16 20 C 0.07 0.72 6.58 -2.97 -0.02 0.70 16 21 C -0.17 -2.68 9.10 -39.39 -0.36 -3.04 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 26 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 27 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 29 H 0.11 1.28 7.32 -52.49 -0.38 0.89 16 30 H 0.19 2.16 6.79 -52.49 -0.36 1.80 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.12 1.85 6.60 -52.49 -0.35 1.50 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -31.25 298.03 -10.13 -41.38 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.85 Total: -1.02 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -4.40 Total: -18.97 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.35 Total: -42.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.25 -10.13 -41.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260136089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.673 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds