Wall clock time and date at job start Mon Mar 30 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00297 * 2 1 4 4 H 1.48497 * 109.47309 * 269.99806 * 3 2 1 5 5 H 1.48502 * 109.47248 * 30.00070 * 3 2 1 6 6 H 1.48500 * 109.47310 * 149.99757 * 3 2 1 7 7 C 1.37880 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00243 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46809 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47190 * 180.02562 * 10 9 7 12 12 C 1.38318 * 119.96280 * 270.02186 * 11 10 9 13 13 C 1.38264 * 120.14304 * 179.97438 * 12 11 10 14 14 C 1.38132 * 120.07484 * 359.72787 * 13 12 11 15 15 C 1.38873 * 119.92508 * 0.52265 * 14 13 12 16 16 N 1.39845 * 120.07456 * 179.74514 * 15 14 13 17 17 C 1.36437 * 125.84458 * 179.75356 * 16 15 14 18 18 N 1.28263 * 114.55081 * 179.72585 * 17 16 15 19 19 C 1.46966 * 110.20048 * 0.27630 * 18 17 16 20 20 C 1.47292 * 125.83766 * 359.94321 * 16 15 14 21 21 C 1.38087 * 119.96593 * 89.99585 * 11 10 9 22 22 H 0.97005 * 119.99559 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47278 * 59.99902 * 9 7 2 24 24 H 1.09004 * 109.46662 * 299.99474 * 9 7 2 25 25 H 1.09007 * 109.47433 * 60.00015 * 10 9 7 26 26 H 1.08996 * 109.47299 * 299.99621 * 10 9 7 27 27 H 1.07996 * 119.92507 * 359.97438 * 12 11 10 28 28 H 1.08003 * 119.95855 * 180.02562 * 13 12 11 29 29 H 1.07993 * 120.03488 * 180.27315 * 14 13 12 30 30 H 1.08002 * 122.72720 * 0.02562 * 17 16 15 31 31 H 1.08998 * 110.55134 * 118.58943 * 19 18 17 32 32 H 1.09003 * 110.54748 * 241.25600 * 19 18 17 33 33 H 1.08998 * 110.89785 * 61.73970 * 20 16 15 34 34 H 1.09002 * 110.65035 * 298.59155 * 20 16 15 35 35 H 1.08000 * 120.03290 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 6 1.1454 -5.5656 1.1979 13 6 0.4537 -6.7627 1.2017 14 6 0.1011 -7.3622 0.0082 15 6 0.4517 -6.7667 -1.1963 16 7 0.1010 -7.3737 -2.4064 17 6 0.3799 -6.8920 -3.6521 18 7 -0.0395 -7.6289 -4.6146 19 6 -0.7271 -8.8143 -4.0837 20 6 -0.6360 -8.6403 -2.5541 21 6 1.1471 -5.5641 -1.1967 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5566 0.8904 25 1 2.8719 -3.6044 0.8906 26 1 2.8717 -3.6044 -0.8894 27 1 1.4161 -5.0967 2.1324 28 1 0.1845 -7.2271 2.1389 29 1 -0.4431 -8.2950 0.0119 30 1 0.9147 -5.9679 -3.8147 31 1 -1.7684 -8.8289 -4.4057 32 1 -0.2176 -9.7251 -4.3984 33 1 -1.6308 -8.5648 -2.1151 34 1 -0.0797 -9.4633 -2.1053 35 1 1.4177 -5.0964 -2.1317 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260136089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:42 Heat of formation + Delta-G solvation = 30.084493 kcal Electronic energy + Delta-G solvation = -16524.349953 eV Core-core repulsion = 13907.286125 eV Total energy + Delta-G solvation = -2617.063828 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.65401 -39.75536 -36.08564 -34.62574 -33.53933 -31.51454 -30.42960 -29.75993 -26.93174 -24.40249 -24.05804 -23.04044 -21.29344 -21.18566 -18.82308 -18.27323 -17.06216 -16.96550 -16.50943 -16.39991 -15.30315 -15.07521 -14.66249 -14.41031 -14.30285 -14.06703 -13.96908 -13.46979 -13.26285 -13.02585 -12.83672 -12.76370 -12.42307 -12.38956 -11.99195 -11.69056 -11.53017 -11.14501 -11.05017 -10.54627 -10.34336 -9.59862 -8.44932 -8.18322 -6.30225 0.38122 0.50262 1.41919 1.42990 1.54087 1.56354 1.89209 2.42406 2.94424 3.14857 3.42676 3.61824 3.84982 4.03254 4.09474 4.24822 4.34128 4.38283 4.49804 4.56235 4.67650 4.79257 4.87500 4.88968 4.95247 5.03851 5.10091 5.28760 5.51512 5.55487 5.62485 5.66138 5.85857 5.92190 6.00017 6.24539 6.49833 6.78887 6.86990 7.39362 8.93101 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029251 B = 0.004730 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.014114 B = 5918.098528 C = 6536.523419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.038 3.962 10 C -0.067 4.067 11 C -0.043 4.043 12 C -0.167 4.167 13 C -0.076 4.076 14 C -0.178 4.178 15 C 0.187 3.813 16 N -0.583 5.583 17 C 0.339 3.661 18 N -0.591 5.591 19 C 0.016 3.984 20 C 0.070 3.930 21 C -0.181 4.181 22 H 0.263 0.737 23 H -0.012 1.012 24 H -0.009 1.009 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.154 0.846 29 H 0.146 0.854 30 H 0.197 0.803 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 -18.377 -1.473 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.001 3.999 10 C -0.105 4.105 11 C -0.044 4.044 12 C -0.186 4.186 13 C -0.094 4.094 14 C -0.199 4.199 15 C 0.091 3.909 16 N -0.293 5.293 17 C 0.042 3.958 18 N -0.314 5.314 19 C -0.113 4.113 20 C -0.053 4.053 21 C -0.203 4.203 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.009 0.991 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.172 0.828 29 H 0.164 0.836 30 H 0.213 0.787 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.299 -18.458 -2.497 18.628 hybrid contribution 0.031 1.118 0.727 1.334 sum -0.268 -17.339 -1.770 17.432 Atomic orbital electron populations 1.70113 1.07886 1.27725 1.51689 1.25974 0.95703 1.03347 0.94697 0.85454 0.78735 0.78428 0.78481 1.19834 1.20873 1.18536 1.21722 0.93676 0.92197 1.50536 0.91848 1.18893 0.93968 0.92262 0.94776 1.20593 0.97338 0.90718 1.01837 1.19996 0.96122 0.95000 0.93269 1.21180 1.02607 0.97322 0.97520 1.21206 0.95522 0.94141 0.98560 1.20866 1.06104 1.02664 0.90268 1.17601 0.95987 0.92348 0.84972 1.45936 1.56176 1.23621 1.03594 1.25048 0.92176 0.97866 0.80688 1.74263 1.20900 1.08035 1.28234 1.23309 1.01405 0.95873 0.90707 1.22959 0.97907 0.85649 0.98739 1.20659 1.04943 0.96069 0.98624 0.92831 0.99314 0.99088 0.91504 0.91798 0.85851 0.82838 0.83627 0.78693 0.88467 0.87980 0.89097 0.88466 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.54 -30.84 9.11 25.60 0.23 -30.61 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 9 C 0.04 2.02 4.96 29.85 0.15 2.17 16 10 C -0.07 -2.78 5.28 29.85 0.16 -2.62 16 11 C -0.04 -1.54 5.13 -19.88 -0.10 -1.64 16 12 C -0.17 -5.21 9.70 22.29 0.22 -5.00 16 13 C -0.08 -1.88 10.04 22.25 0.22 -1.66 16 14 C -0.18 -4.25 9.50 22.40 0.21 -4.04 16 15 C 0.19 5.18 6.64 38.18 0.25 5.43 16 16 N -0.58 -14.13 3.23 -517.06 -1.67 -15.80 16 17 C 0.34 8.59 11.59 180.45 2.09 10.68 16 18 N -0.59 -15.32 11.60 -349.14 -4.05 -19.37 16 19 C 0.02 0.30 8.05 86.70 0.70 1.00 16 20 C 0.07 1.23 6.58 86.64 0.57 1.80 16 21 C -0.18 -5.88 9.10 22.40 0.20 -5.68 16 22 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 23 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.07 2.63 8.09 -2.38 -0.02 2.61 16 26 H 0.06 2.52 8.08 -2.39 -0.02 2.51 16 27 H 0.12 3.71 8.06 -2.91 -0.02 3.68 16 28 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.15 2.57 7.32 -2.91 -0.02 2.55 16 30 H 0.20 4.50 6.79 -2.91 -0.02 4.48 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.12 3.82 6.60 -2.91 -0.02 3.80 16 Total: -1.00 -67.95 298.03 3.02 -64.93 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.07 Total: 10.70 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 5.37 Total: -29.68 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -5.44 Total: -92.15 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.95 3.02 -64.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260136089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.015 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds