Wall clock time and date at job start Mon Mar 30 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30243 * 126.10738 * 2 1 4 4 N 1.39866 * 110.08559 * 180.02562 * 3 2 1 5 5 C 1.46504 * 125.46254 * 180.02562 * 4 3 2 6 6 C 1.37034 * 109.07918 * 0.26110 * 4 3 2 7 7 C 1.39287 * 133.84691 * 180.46154 * 6 4 3 8 8 C 1.36587 * 119.85741 * 179.62414 * 7 6 4 9 9 C 1.38966 * 120.80893 * 359.66712 * 8 7 6 10 10 C 1.36465 * 120.63246 * 0.04727 * 9 8 7 11 11 C 1.50702 * 120.18481 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46921 * 259.84960 * 11 10 9 13 13 C 1.50702 * 109.46921 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00022 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99908 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00085 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00067 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47000 * 59.99776 * 17 15 13 19 19 H 1.48501 * 109.47432 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47380 * 300.00080 * 17 15 13 21 21 C 1.39946 * 119.63634 * 359.97438 * 10 9 8 22 22 H 1.09002 * 109.46984 * 95.77867 * 1 2 3 23 23 H 1.08998 * 109.47283 * 215.77762 * 1 2 3 24 24 H 1.09005 * 109.47254 * 335.78110 * 1 2 3 25 25 H 1.08999 * 109.47370 * 90.01722 * 5 4 3 26 26 H 1.09001 * 109.47321 * 210.02268 * 5 4 3 27 27 H 1.09004 * 109.47045 * 330.01532 * 5 4 3 28 28 H 1.08007 * 120.07000 * 359.30795 * 7 6 4 29 29 H 1.07995 * 119.59895 * 179.69109 * 8 7 6 30 30 H 1.07998 * 119.68536 * 180.02562 * 9 8 7 31 31 H 1.09005 * 109.46921 * 19.84671 * 11 10 9 32 32 H 1.08990 * 109.47546 * 139.84472 * 11 10 9 33 33 H 1.08999 * 109.47319 * 299.99236 * 12 11 10 34 34 H 1.08997 * 109.47278 * 60.00110 * 12 11 10 35 35 H 0.97003 * 119.99917 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6188 0.6662 -0.0006 5 6 4.7651 1.5785 -0.0002 6 6 3.6919 -0.7022 -0.0069 7 6 4.7464 -1.6121 -0.0021 8 6 4.4874 -2.9532 -0.0034 9 6 3.1805 -3.4256 -0.0026 10 6 2.1274 -2.5578 -0.0014 11 6 0.7142 -3.0812 0.0000 12 6 0.1462 -3.0198 -1.4193 13 6 -1.2668 -3.5438 -1.4180 14 1 -1.7147 -3.8867 -0.4970 15 6 -1.9874 -3.5863 -2.5927 16 7 -1.4418 -3.1692 -3.7143 17 14 -3.7386 -4.2365 -2.5912 18 1 -4.5743 -3.4056 -1.6876 19 1 -4.2900 -4.1768 -3.9688 20 1 -3.7439 -5.6433 -2.1159 21 6 2.3669 -1.1790 -0.0005 22 1 -0.3633 -0.1035 -1.0225 23 1 -0.3634 -0.8337 0.6008 24 1 -0.3634 0.9372 0.4216 25 1 5.0499 1.8039 1.0275 26 1 5.6034 1.1090 -0.5149 27 1 4.4950 2.5016 -0.5131 28 1 5.7668 -1.2580 -0.0024 29 1 5.3082 -3.6550 -0.0047 30 1 2.9965 -4.4898 -0.0033 31 1 0.7096 -4.1139 0.3488 32 1 0.1013 -2.4710 0.6633 33 1 0.1507 -1.9871 -1.7681 34 1 0.7590 -3.6301 -2.0826 35 1 -1.9489 -3.1988 -4.5407 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260150686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:25 Heat of formation + Delta-G solvation = 70.056604 kcal Electronic energy + Delta-G solvation = -17175.156724 eV Core-core repulsion = 14559.826216 eV Total energy + Delta-G solvation = -2615.330508 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.96860 -37.17917 -34.65678 -33.22723 -31.74641 -29.57588 -29.21530 -28.56654 -25.07669 -24.97312 -22.30598 -21.54735 -20.63765 -18.72455 -16.65473 -16.46478 -16.02031 -15.31924 -14.97982 -14.46260 -14.13343 -13.53428 -13.25571 -12.81508 -12.70327 -12.52455 -12.33592 -12.15980 -11.85561 -11.43592 -11.31831 -11.13599 -10.87116 -10.68953 -10.50581 -10.25750 -9.75130 -9.68182 -9.14067 -9.03299 -8.33188 -8.20393 -7.35972 -5.97701 -4.00918 1.34056 1.91170 2.66542 2.83540 3.34613 3.39630 3.41528 4.17083 4.47648 4.63774 4.87953 5.00870 5.21042 5.31436 5.32621 5.37874 5.42710 5.56250 5.73119 5.86905 6.03313 6.10479 6.15751 6.31905 6.37319 6.55877 6.67896 6.78458 6.91634 6.98072 7.13709 7.27636 7.40761 7.71617 7.84518 8.01193 8.02982 8.41926 9.06045 9.63074 11.13046 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.006160 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.639929 B = 4544.015998 C = 5074.425248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.122 3.878 3 N -0.274 5.274 4 N -0.421 5.421 5 C 0.117 3.883 6 C 0.130 3.870 7 C -0.169 4.169 8 C -0.061 4.061 9 C -0.177 4.177 10 C 0.027 3.973 11 C -0.088 4.088 12 C 0.031 3.969 13 C -0.521 4.521 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.890 3.110 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.174 4.174 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.023 0.977 34 H 0.016 0.984 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.236 5.068 7.953 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 N -0.088 5.088 4 N -0.209 5.209 5 C -0.024 4.024 6 C 0.016 3.984 7 C -0.191 4.191 8 C -0.082 4.082 9 C -0.196 4.196 10 C 0.025 3.975 11 C -0.125 4.125 12 C -0.006 4.006 13 C -0.559 4.559 14 H 0.074 0.926 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.181 4.181 22 H 0.114 0.886 23 H 0.109 0.891 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.134 0.866 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.034 0.966 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.389 6.521 7.761 15.247 hybrid contribution -0.663 -1.114 -0.242 1.319 sum 10.727 5.406 7.519 14.172 Atomic orbital electron populations 1.20502 0.85219 1.03099 1.05041 1.23634 0.96831 0.88541 0.96537 1.76508 0.86895 1.23563 1.21820 1.47955 1.04006 1.02546 1.66390 1.21586 0.85099 0.93495 1.02264 1.18810 0.95772 0.84373 0.99442 1.19589 0.96120 0.92106 1.11265 1.20633 0.96910 0.94220 0.96408 1.20569 0.91756 0.99749 1.07548 1.19661 0.97414 0.90145 0.90296 1.21017 0.89482 0.99785 1.02190 1.19085 0.95041 0.97827 0.88609 1.21190 0.98356 1.42252 0.94100 0.92619 1.24998 0.98091 0.95494 0.95649 1.69964 1.37164 1.47201 0.98937 0.86694 0.85017 0.79526 0.76971 1.20196 1.21390 1.20286 1.19646 0.91313 0.93980 1.13195 0.88637 0.89074 0.91332 0.91910 0.90299 0.89925 0.86626 0.85956 0.85803 0.91951 0.91478 0.95870 0.96597 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 9.14 36.00 0.33 -1.05 16 2 C 0.12 2.31 7.43 -80.19 -0.60 1.72 16 3 N -0.27 -5.09 12.40 34.84 0.43 -4.66 16 4 N -0.42 -6.97 4.05 -65.46 -0.27 -7.24 16 5 C 0.12 1.30 11.40 59.85 0.68 1.98 16 6 C 0.13 2.28 6.87 -84.18 -0.58 1.70 16 7 C -0.17 -2.49 9.97 -39.79 -0.40 -2.89 16 8 C -0.06 -0.88 9.96 -39.91 -0.40 -1.28 16 9 C -0.18 -2.96 9.59 -39.95 -0.38 -3.35 16 10 C 0.03 0.52 5.13 -104.62 -0.54 -0.02 16 11 C -0.09 -1.79 4.71 -27.88 -0.13 -1.92 16 12 C 0.03 0.79 4.84 -27.88 -0.13 0.66 16 13 C -0.52 -14.18 9.11 -34.44 -0.31 -14.50 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 17 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.17 -3.37 6.15 -105.21 -0.65 -4.01 16 22 H 0.10 1.80 7.23 -51.93 -0.38 1.42 16 23 H 0.09 1.54 5.67 -51.93 -0.29 1.24 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.89 8.01 -52.49 -0.42 1.47 16 31 H 0.06 1.22 7.99 -51.93 -0.41 0.80 16 32 H 0.07 1.31 5.66 -51.93 -0.29 1.01 16 33 H 0.02 0.62 6.53 -51.93 -0.34 0.28 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 294.32 15.07 4.44 4.44 Total: -1.00 -31.95 294.32 -7.52 -39.47 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -4.64 Total: -1.02 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -3.20 Total: -21.41 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.90 Total: -37.69 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.95 -7.52 -39.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260150686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.530 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds