Wall clock time and date at job start Mon Mar 30 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30243 * 126.10738 * 2 1 4 4 N 1.39866 * 110.08559 * 180.02562 * 3 2 1 5 5 C 1.46504 * 125.46254 * 180.02562 * 4 3 2 6 6 C 1.37034 * 109.07918 * 0.26110 * 4 3 2 7 7 C 1.39287 * 133.84691 * 180.46154 * 6 4 3 8 8 C 1.36587 * 119.85741 * 179.62414 * 7 6 4 9 9 C 1.38966 * 120.80893 * 359.66712 * 8 7 6 10 10 C 1.36465 * 120.63246 * 0.04727 * 9 8 7 11 11 C 1.50702 * 120.18481 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46921 * 259.84960 * 11 10 9 13 13 C 1.50702 * 109.46921 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00022 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99908 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00085 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00067 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47000 * 59.99776 * 17 15 13 19 19 H 1.48501 * 109.47432 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47380 * 300.00080 * 17 15 13 21 21 C 1.39946 * 119.63634 * 359.97438 * 10 9 8 22 22 H 1.09002 * 109.46984 * 95.77867 * 1 2 3 23 23 H 1.08998 * 109.47283 * 215.77762 * 1 2 3 24 24 H 1.09005 * 109.47254 * 335.78110 * 1 2 3 25 25 H 1.08999 * 109.47370 * 90.01722 * 5 4 3 26 26 H 1.09001 * 109.47321 * 210.02268 * 5 4 3 27 27 H 1.09004 * 109.47045 * 330.01532 * 5 4 3 28 28 H 1.08007 * 120.07000 * 359.30795 * 7 6 4 29 29 H 1.07995 * 119.59895 * 179.69109 * 8 7 6 30 30 H 1.07998 * 119.68536 * 180.02562 * 9 8 7 31 31 H 1.09005 * 109.46921 * 19.84671 * 11 10 9 32 32 H 1.08990 * 109.47546 * 139.84472 * 11 10 9 33 33 H 1.08999 * 109.47319 * 299.99236 * 12 11 10 34 34 H 1.08997 * 109.47278 * 60.00110 * 12 11 10 35 35 H 0.97003 * 119.99917 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6188 0.6662 -0.0006 5 6 4.7651 1.5785 -0.0002 6 6 3.6919 -0.7022 -0.0069 7 6 4.7464 -1.6121 -0.0021 8 6 4.4874 -2.9532 -0.0034 9 6 3.1805 -3.4256 -0.0026 10 6 2.1274 -2.5578 -0.0014 11 6 0.7142 -3.0812 0.0000 12 6 0.1462 -3.0198 -1.4193 13 6 -1.2668 -3.5438 -1.4180 14 1 -1.7147 -3.8867 -0.4970 15 6 -1.9874 -3.5863 -2.5927 16 7 -1.4418 -3.1692 -3.7143 17 14 -3.7386 -4.2365 -2.5912 18 1 -4.5743 -3.4056 -1.6876 19 1 -4.2900 -4.1768 -3.9688 20 1 -3.7439 -5.6433 -2.1159 21 6 2.3669 -1.1790 -0.0005 22 1 -0.3633 -0.1035 -1.0225 23 1 -0.3634 -0.8337 0.6008 24 1 -0.3634 0.9372 0.4216 25 1 5.0499 1.8039 1.0275 26 1 5.6034 1.1090 -0.5149 27 1 4.4950 2.5016 -0.5131 28 1 5.7668 -1.2580 -0.0024 29 1 5.3082 -3.6550 -0.0047 30 1 2.9965 -4.4898 -0.0033 31 1 0.7096 -4.1139 0.3488 32 1 0.1013 -2.4710 0.6633 33 1 0.1507 -1.9871 -1.7681 34 1 0.7590 -3.6301 -2.0826 35 1 -1.9489 -3.1988 -4.5407 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260150686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:25 Heat of formation + Delta-G solvation = 51.706357 kcal Electronic energy + Delta-G solvation = -17175.952450 eV Core-core repulsion = 14559.826216 eV Total energy + Delta-G solvation = -2616.126234 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.25631 -38.49156 -36.20476 -34.90564 -33.40252 -30.81003 -30.64575 -30.08667 -26.83749 -26.20683 -23.87196 -22.91519 -22.23268 -20.07397 -18.44625 -17.90873 -17.38782 -16.58653 -16.41367 -16.28314 -15.42922 -14.90903 -14.55508 -14.29633 -14.28495 -13.89487 -13.63587 -13.57254 -13.20346 -13.11090 -12.82656 -12.65994 -12.57370 -12.30347 -11.98283 -11.77458 -11.53818 -11.39965 -11.06187 -10.54272 -10.47551 -9.53010 -8.63395 -8.12918 -6.24150 0.04447 0.61962 1.44489 1.47002 1.48266 1.53160 1.54645 2.45719 2.88208 3.20373 3.47046 3.62728 3.79452 4.10501 4.28488 4.38306 4.42549 4.44749 4.47350 4.64487 4.66054 4.75886 4.84239 4.90902 4.95681 5.04854 5.22051 5.27844 5.48236 5.55942 5.62265 5.64942 5.91719 5.93875 5.99271 6.22307 6.29660 6.67513 6.92699 7.44884 8.98128 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.006160 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.639929 B = 4544.015998 C = 5074.425248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.096 3.904 3 N -0.288 5.288 4 N -0.420 5.420 5 C 0.105 3.895 6 C 0.114 3.886 7 C -0.157 4.157 8 C -0.057 4.057 9 C -0.180 4.180 10 C -0.006 4.006 11 C -0.073 4.073 12 C 0.043 3.957 13 C -0.534 4.534 14 H 0.064 0.936 15 C 0.003 3.997 16 N -0.935 5.935 17 Si 0.961 3.039 18 H -0.265 1.265 19 H -0.288 1.288 20 H -0.267 1.267 21 C -0.205 4.205 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.156 0.844 29 H 0.166 0.834 30 H 0.135 0.865 31 H 0.068 0.932 32 H 0.071 0.929 33 H -0.001 1.001 34 H -0.018 1.018 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.793 4.761 9.042 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.080 4.080 3 N -0.103 5.103 4 N -0.208 5.208 5 C -0.035 4.035 6 C -0.001 4.001 7 C -0.179 4.179 8 C -0.077 4.077 9 C -0.199 4.199 10 C -0.008 4.008 11 C -0.110 4.110 12 C 0.006 3.994 13 C -0.572 4.572 14 H 0.083 0.917 15 C -0.195 4.195 16 N -0.575 5.575 17 Si 0.785 3.215 18 H -0.190 1.190 19 H -0.214 1.214 20 H -0.192 1.192 21 C -0.213 4.213 22 H 0.088 0.912 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.124 0.876 27 H 0.108 0.892 28 H 0.174 0.826 29 H 0.183 0.817 30 H 0.152 0.848 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.017 0.983 34 H 0.000 1.000 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.957 6.224 8.872 16.892 hybrid contribution -0.989 -0.973 -0.576 1.502 sum 11.967 5.251 8.296 15.480 Atomic orbital electron populations 1.20381 0.85076 1.04129 1.03424 1.23798 0.97366 0.89010 0.97846 1.76393 0.88322 1.23796 1.21811 1.48380 1.04160 1.03088 1.65213 1.22032 0.84058 0.93229 1.04136 1.19212 0.95830 0.85153 0.99874 1.20102 0.97250 0.91719 1.08789 1.21084 0.96895 0.95031 0.94702 1.20879 0.92520 1.00078 1.06437 1.19590 0.96997 0.90770 0.93467 1.20732 0.90977 1.00367 0.98935 1.18863 0.94183 0.95337 0.91025 1.21631 0.99364 1.41766 0.94484 0.91732 1.25916 1.02665 0.95707 0.95211 1.70117 1.39039 1.48709 0.99647 0.85570 0.79552 0.79295 0.77052 1.18971 1.21358 1.19203 1.19926 0.92717 0.94201 1.14429 0.91240 0.89326 0.89187 0.89887 0.87646 0.89228 0.82594 0.81679 0.84754 0.91329 0.91110 0.98300 1.00006 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.60 9.14 71.23 0.65 -1.95 16 2 C 0.10 3.76 7.43 44.79 0.33 4.10 16 3 N -0.29 -10.75 12.40 -43.70 -0.54 -11.29 16 4 N -0.42 -13.30 4.05 -361.03 -1.46 -14.76 16 5 C 0.11 2.03 11.40 127.77 1.46 3.48 16 6 C 0.11 3.83 6.87 39.21 0.27 4.10 16 7 C -0.16 -4.09 9.97 22.14 0.22 -3.86 16 8 C -0.06 -1.45 9.96 22.06 0.22 -1.23 16 9 C -0.18 -5.80 9.59 22.03 0.21 -5.59 16 10 C -0.01 -0.23 5.13 -19.86 -0.10 -0.33 16 11 C -0.07 -3.08 4.71 29.85 0.14 -2.94 16 12 C 0.04 2.27 4.84 29.85 0.14 2.42 16 13 C -0.53 -29.81 9.11 25.60 0.23 -29.58 16 14 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 15 C 0.00 0.15 5.46 84.65 0.46 0.61 16 16 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 17 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 C -0.21 -8.04 6.15 -20.24 -0.12 -8.16 16 22 H 0.07 2.84 7.23 -2.39 -0.02 2.82 16 23 H 0.09 3.16 5.67 -2.39 -0.01 3.15 16 24 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.13 3.93 8.01 -2.91 -0.02 3.90 16 31 H 0.07 2.72 7.99 -2.38 -0.02 2.70 16 32 H 0.07 2.86 5.66 -2.39 -0.01 2.85 16 33 H 0.00 -0.08 6.53 -2.39 -0.02 -0.09 16 34 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 35 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -71.20 294.32 5.50 -65.69 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.08 Total: 10.30 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 4.12 Total: -38.95 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -1.72 Total: -83.00 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -71.20 5.50 -65.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260150686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.399 kcal (2) G-P(sol) polarization free energy of solvation -71.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds