Wall clock time and date at job start Mon Mar 30 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38716 * 119.74217 * 2 1 4 4 C 1.37956 * 120.43905 * 180.02562 * 3 2 1 5 5 C 1.38708 * 119.83008 * 0.02562 * 4 3 2 6 6 C 1.40535 * 119.96415 * 359.97438 * 5 4 3 7 7 C 1.37717 * 119.73685 * 179.74258 * 2 1 3 8 8 N 1.35891 * 107.02614 * 179.97438 * 6 5 4 9 9 C 1.30089 * 109.73659 * 0.02562 * 8 6 5 10 10 C 1.50701 * 124.98396 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.47051 * 300.02561 * 10 9 8 12 12 C 1.53000 * 109.46807 * 60.02181 * 10 9 8 13 13 N 1.36541 * 110.03755 * 359.97438 * 9 8 6 14 14 C 1.37309 * 126.39979 * 180.02562 * 13 9 8 15 15 H 1.07999 * 119.99776 * 33.75379 * 14 13 9 16 16 C 1.38907 * 119.99990 * 213.75375 * 14 13 9 17 17 N 1.31379 * 120.00037 * 20.16283 * 16 14 13 18 18 Si 1.86798 * 119.99945 * 200.15725 * 16 14 13 19 19 H 1.48503 * 109.46830 * 60.00391 * 18 16 14 20 20 H 1.48500 * 109.47274 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47546 * 300.00253 * 18 16 14 22 22 H 1.08993 * 109.47382 * 89.99799 * 1 2 3 23 23 H 1.09007 * 109.46905 * 209.99816 * 1 2 3 24 24 H 1.08996 * 109.47055 * 329.99648 * 1 2 3 25 25 H 1.08001 * 119.78369 * 359.97438 * 3 2 1 26 26 H 1.08002 * 120.08577 * 179.97438 * 4 3 2 27 27 H 1.08001 * 120.11714 * 359.97438 * 7 2 1 28 28 H 1.09004 * 109.47411 * 180.02562 * 10 9 8 29 29 H 1.08995 * 109.46967 * 59.99825 * 11 10 9 30 30 H 1.09003 * 109.47027 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.46911 * 299.99564 * 11 10 9 32 32 H 1.09004 * 109.47112 * 179.97438 * 12 10 9 33 33 H 1.08993 * 109.47700 * 299.99848 * 12 10 9 34 34 H 1.09002 * 109.47565 * 60.00764 * 12 10 9 35 35 H 0.97001 * 119.99871 * 178.39887 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2044 0.0000 4 6 3.5747 1.2212 -0.0005 5 6 4.2792 0.0264 -0.0016 6 6 3.5870 -1.1967 -0.0016 7 6 2.1901 -1.1958 0.0054 8 7 4.5218 -2.1829 -0.0034 9 6 5.7127 -1.6595 -0.0039 10 6 7.0006 -2.4421 -0.0051 11 6 7.0624 -3.3245 1.2432 12 6 7.0612 -3.3222 -1.2552 13 7 5.6248 -0.2969 -0.0030 14 6 6.6753 0.5874 -0.0037 15 1 7.5886 0.3405 -0.5246 16 6 6.5632 1.7995 0.6654 17 7 5.6577 1.9497 1.6054 18 14 7.7002 3.2159 0.2290 19 1 7.5156 3.5765 -1.1998 20 1 7.3787 4.3892 1.0805 21 1 9.1095 2.8083 0.4586 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6475 2.1352 -0.0004 26 1 4.1047 2.1622 -0.0009 27 1 1.6477 -2.1297 0.0100 28 1 7.8448 -1.7526 -0.0049 29 1 6.2182 -4.0139 1.2429 30 1 7.9941 -3.8902 1.2425 31 1 7.0192 -2.6975 2.1338 32 1 7.9929 -3.8880 -1.2564 33 1 6.2171 -4.0117 -1.2555 34 1 7.0172 -2.6936 -2.1447 35 1 5.5948 2.7883 2.0887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260160912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:22 Heat of formation + Delta-G solvation = 45.936319 kcal Electronic energy + Delta-G solvation = -17628.492016 eV Core-core repulsion = 15012.115575 eV Total energy + Delta-G solvation = -2616.376442 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.76967 -36.80623 -34.54869 -33.89529 -31.18321 -30.69176 -28.27095 -26.61629 -25.95548 -24.86913 -22.47541 -20.59510 -20.54131 -18.62023 -17.53057 -16.15275 -15.36838 -14.70414 -14.22774 -14.07040 -13.72506 -13.37183 -12.95776 -12.89186 -12.79242 -12.38169 -11.95039 -11.66309 -11.58224 -11.35804 -11.28378 -10.91062 -10.75691 -10.74434 -10.69473 -10.40660 -10.14241 -10.01074 -9.45172 -8.83339 -8.59987 -7.12511 -6.85662 -6.64512 -4.49728 2.17600 2.72046 2.98257 3.01363 3.03772 3.77354 4.04942 4.56880 4.70935 5.07979 5.20023 5.60636 5.67688 5.76035 5.76895 5.98244 6.06056 6.09697 6.14749 6.20696 6.27048 6.36799 6.38061 6.43092 6.69568 6.75130 6.80091 6.83283 6.91779 6.97676 7.11075 7.26128 7.59044 7.67134 7.91014 8.11512 8.20457 8.64860 9.26620 9.44361 10.21458 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.011890 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.774399 B = 2354.280620 C = 3913.689742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.118 4.118 3 C -0.154 4.154 4 C -0.041 4.041 5 C 0.043 3.957 6 C 0.030 3.970 7 C -0.088 4.088 8 N -0.527 5.527 9 C 0.221 3.779 10 C -0.003 4.003 11 C -0.133 4.133 12 C -0.135 4.135 13 N -0.287 5.287 14 C -0.362 4.362 15 H 0.108 0.892 16 C 0.055 3.945 17 N -0.820 5.820 18 Si 0.926 3.074 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.266 1.266 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 -1.937 -2.279 3.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.175 4.175 4 C -0.061 4.061 5 C -0.072 4.072 6 C -0.094 4.094 7 C -0.108 4.108 8 N -0.250 5.250 9 C -0.041 4.041 10 C -0.023 4.023 11 C -0.191 4.191 12 C -0.193 4.193 13 N 0.043 4.957 14 C -0.490 4.490 15 H 0.125 0.875 16 C -0.158 4.158 17 N -0.449 5.449 18 Si 0.750 3.250 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.191 1.191 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.124 0.876 26 H 0.133 0.867 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.559 -2.532 -2.114 3.345 hybrid contribution 0.746 1.784 0.086 1.936 sum 0.187 -0.748 -2.028 2.169 Atomic orbital electron populations 1.20576 0.92451 1.01401 1.00908 1.19248 0.94607 0.92855 1.05370 1.20426 0.93222 0.96353 1.07542 1.20012 0.92380 0.95991 0.97714 1.18670 0.84322 0.95571 1.08651 1.18865 0.93499 0.89303 1.07693 1.19674 0.90375 0.96514 1.04214 1.70087 0.97320 1.31030 1.26541 1.23111 0.94831 0.81492 1.04655 1.19379 0.91523 0.95372 0.96040 1.21698 1.01169 0.99248 0.96957 1.21744 1.01369 0.99399 0.96781 1.41171 1.04023 1.04655 1.45848 1.19559 0.95655 0.97937 1.35827 0.87481 1.25548 0.97451 0.99476 0.93313 1.70047 1.32292 1.26559 1.16035 0.86007 0.80092 0.79516 0.79358 1.19021 1.20199 1.19065 0.92535 0.92620 0.92594 0.87579 0.86729 0.87533 0.89785 0.91969 0.92898 0.92822 0.92843 0.91852 0.93121 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.00 36.01 0.36 -1.13 16 2 C -0.12 -2.40 5.88 -104.63 -0.61 -3.02 16 3 C -0.15 -3.32 9.67 -39.51 -0.38 -3.70 16 4 C -0.04 -1.01 8.57 -39.51 -0.34 -1.35 16 5 C 0.04 1.16 6.15 -83.86 -0.52 0.64 16 6 C 0.03 0.78 7.23 -84.66 -0.61 0.17 16 7 C -0.09 -1.97 9.73 -39.23 -0.38 -2.35 16 8 N -0.53 -13.35 11.26 -8.10 -0.09 -13.45 16 9 C 0.22 5.39 6.34 -154.37 -0.98 4.41 16 10 C 0.00 -0.06 3.25 -91.77 -0.30 -0.35 16 11 C -0.13 -2.31 9.17 37.16 0.34 -1.96 16 12 C -0.13 -2.23 9.17 37.16 0.34 -1.89 16 13 N -0.29 -7.62 2.86 -56.65 -0.16 -7.78 16 14 C -0.36 -9.27 9.28 -14.85 -0.14 -9.41 16 15 H 0.11 2.56 7.36 -52.49 -0.39 2.17 16 16 C 0.06 1.36 4.53 -17.50 -0.08 1.28 16 17 N -0.82 -21.42 10.61 55.49 0.59 -20.83 16 18 Si 0.93 18.63 29.60 -169.99 -5.03 13.60 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.79 8.08 -51.92 -0.42 0.37 16 24 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 25 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 26 H 0.11 2.88 6.27 -52.49 -0.33 2.55 16 27 H 0.11 2.16 8.06 -52.49 -0.42 1.73 16 28 H 0.08 1.62 6.98 -51.93 -0.36 1.26 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 292.81 15.07 4.41 4.41 Total: -1.00 -29.29 292.81 -8.44 -37.73 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.86 Total: 4.98 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -3.30 Total: -18.66 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.34 Total: -42.05 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.29 -8.44 -37.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260160912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.662 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds