Wall clock time and date at job start Mon Mar 30 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.37917 * 119.91189 * 2 1 4 4 C 1.39834 * 119.82068 * 179.75509 * 3 2 1 5 5 C 1.47167 * 120.16839 * 180.29330 * 4 3 2 6 6 O 1.21256 * 120.00323 * 174.44158 * 5 4 3 7 7 C 1.39866 * 119.66159 * 0.51820 * 4 3 2 8 8 C 1.50707 * 120.09092 * 179.77348 * 7 4 3 9 9 C 1.50691 * 115.55041 * 294.56273 * 8 7 4 10 10 H 1.08002 * 120.00200 * 144.79050 * 9 8 7 11 11 C 1.37885 * 120.00192 * 324.79084 * 9 8 7 12 12 N 1.31512 * 119.99794 * 350.31235 * 11 9 8 13 13 Si 1.86796 * 120.00027 * 170.31601 * 11 9 8 14 14 H 1.48502 * 109.47233 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47386 * 119.99945 * 13 11 9 16 16 H 1.48504 * 109.47089 * 239.99957 * 13 11 9 17 17 C 1.52997 * 117.49837 * 148.89267 * 8 7 4 18 18 C 1.52998 * 117.49773 * 80.23535 * 8 7 4 19 19 C 1.37864 * 119.82368 * 359.75778 * 7 4 3 20 20 C 1.38385 * 119.91854 * 180.28007 * 2 1 3 21 21 C 1.50702 * 119.82120 * 359.97438 * 20 2 1 22 22 H 1.09000 * 109.46716 * 269.72224 * 1 2 3 23 23 H 1.09003 * 109.47183 * 149.72916 * 1 2 3 24 24 H 1.08993 * 109.47790 * 29.72195 * 1 2 3 25 25 H 1.08002 * 120.08689 * 0.02562 * 3 2 1 26 26 H 1.08004 * 120.00150 * 354.44326 * 5 4 3 27 27 H 0.96999 * 120.00194 * 185.01349 * 12 11 9 28 28 H 1.09005 * 117.50021 * 0.02562 * 17 8 7 29 29 H 1.09000 * 117.50000 * 145.02162 * 17 8 7 30 30 H 1.09001 * 117.49936 * 214.98324 * 18 8 7 31 31 H 1.09008 * 117.49548 * 359.97438 * 18 8 7 32 32 H 1.08003 * 119.91565 * 179.97438 * 19 7 4 33 33 H 1.08992 * 109.46738 * 90.00576 * 21 20 2 34 34 H 1.09002 * 109.46877 * 210.00017 * 21 20 2 35 35 H 1.08994 * 109.47400 * 329.99953 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1947 1.1955 0.0000 4 6 3.5930 1.1932 0.0052 5 6 4.3346 2.4644 0.0117 6 8 5.5425 2.4612 0.1179 7 6 4.2832 -0.0232 -0.0007 8 6 5.7902 -0.0369 -0.0003 9 6 6.4456 0.5285 -1.2338 10 1 7.3730 1.0757 -1.1501 11 6 5.8614 0.3472 -2.4696 12 7 4.8425 -0.4738 -2.6011 13 14 6.5172 1.2678 -3.9568 14 1 7.6593 2.1231 -3.5455 15 1 6.9715 0.2936 -4.9813 16 1 5.4416 2.1191 -4.5258 17 6 6.4859 -1.2087 0.6952 18 6 6.4983 0.1803 1.3385 19 6 3.5814 -1.2098 -0.0064 20 6 2.1971 -1.1994 -0.0059 21 6 1.4377 -2.5011 -0.0116 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 -0.8876 -0.5180 24 1 -0.3634 0.8924 -0.5095 25 1 1.6546 2.1308 0.0004 26 1 3.8029 3.4002 -0.0780 27 1 4.4779 -0.6573 -3.4810 28 1 5.8536 -1.9700 1.1522 29 1 7.4179 -1.5704 0.2608 30 1 7.4384 0.7318 1.3270 31 1 5.8741 0.3334 2.2189 32 1 4.1129 -2.1500 -0.0113 33 1 1.2543 -2.8101 -1.0406 34 1 2.0236 -3.2658 0.4984 35 1 0.4861 -2.3689 0.5031 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260203802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:55 Heat of formation + Delta-G solvation = 14.062367 kcal Electronic energy + Delta-G solvation = -17994.046799 eV Core-core repulsion = 15343.995448 eV Total energy + Delta-G solvation = -2650.051351 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.31188 -37.25687 -36.03602 -32.22458 -32.01225 -31.24806 -27.34466 -26.23318 -25.32167 -22.62172 -21.79791 -20.85954 -19.81469 -18.43464 -16.30768 -15.81502 -14.95099 -14.57189 -14.09213 -13.79460 -13.75080 -13.45201 -12.94767 -12.77643 -12.75987 -12.42655 -11.92510 -11.76618 -11.59010 -10.99742 -10.95455 -10.86710 -10.62844 -10.49522 -10.25788 -10.17161 -9.37043 -9.21774 -8.90044 -8.37979 -8.05410 -7.77696 -7.36120 -5.94011 -3.92407 1.75112 2.41091 3.28605 3.37897 3.44582 3.54623 4.43850 4.75942 5.07717 5.23652 5.40524 5.49112 5.64074 5.67923 5.73379 5.84786 5.92970 6.04018 6.11008 6.18543 6.27252 6.39606 6.42917 6.49842 6.64293 6.78395 6.89457 6.96559 7.02236 7.07128 7.32247 7.39469 7.51487 7.77274 7.89763 7.99949 8.48788 8.63237 8.98518 9.58778 11.05955 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.010146 C = 0.009573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.670900 B = 2759.174203 C = 2924.132646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.135 4.135 3 C -0.082 4.082 4 C -0.184 4.184 5 C 0.354 3.646 6 O -0.409 6.409 7 C 0.097 3.903 8 C 0.090 3.910 9 C -0.451 4.451 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.873 5.873 13 Si 0.885 3.115 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.214 4.214 18 C -0.180 4.180 19 C -0.096 4.096 20 C -0.069 4.069 21 C -0.110 4.110 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.259 0.741 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 -0.029 4.909 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.135 4.135 3 C -0.100 4.100 4 C -0.186 4.186 5 C 0.210 3.790 6 O -0.279 6.279 7 C 0.096 3.904 8 C 0.089 3.911 9 C -0.489 4.489 10 H 0.081 0.919 11 C -0.139 4.139 12 N -0.510 5.510 13 Si 0.713 3.287 14 H -0.196 1.196 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.251 4.251 18 C -0.218 4.218 19 C -0.114 4.114 20 C -0.069 4.069 21 C -0.167 4.167 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.130 0.870 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.698 -0.050 4.819 9.082 hybrid contribution 0.125 0.379 -1.157 1.224 sum -7.572 0.329 3.662 8.418 Atomic orbital electron populations 1.20651 0.92402 1.01818 1.01014 1.19297 0.94859 0.92803 1.06502 1.20898 0.93058 0.96758 0.99336 1.20534 0.93462 0.96065 1.08493 1.23548 0.89616 0.91347 0.74530 1.90594 1.16287 1.89571 1.31412 1.19350 0.94753 0.90685 0.85574 1.17668 0.86573 0.95528 0.91319 1.20381 1.07177 1.32824 0.88510 0.91909 1.24973 0.94946 0.95268 0.98756 1.69942 1.24261 1.33791 1.22960 0.86612 0.79015 0.80153 0.82886 1.19645 1.21157 1.21051 1.23191 1.03403 0.91248 1.07304 1.22717 1.02353 0.99489 0.97221 1.20606 0.92133 0.98134 1.00515 1.19738 0.93911 0.94018 0.99217 1.20768 0.99283 0.94861 1.01764 0.92426 0.92143 0.92485 0.87042 0.91295 0.93055 0.91710 0.90305 0.90341 0.91927 0.86906 0.91611 0.92172 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.18 36.00 0.33 -1.05 16 2 C -0.13 -2.39 5.87 -104.69 -0.61 -3.01 16 3 C -0.08 -1.53 9.44 -39.10 -0.37 -1.90 16 4 C -0.18 -4.02 5.85 -105.07 -0.61 -4.63 16 5 C 0.35 7.44 11.26 34.36 0.39 7.82 16 6 O -0.41 -9.90 12.48 5.58 0.07 -9.83 16 7 C 0.10 2.30 3.35 -104.15 -0.35 1.95 16 8 C 0.09 2.25 0.97 -156.82 -0.15 2.10 16 9 C -0.45 -12.50 6.59 -34.44 -0.23 -12.73 16 10 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 11 C 0.06 1.74 5.26 -17.82 -0.09 1.65 16 12 N -0.87 -24.21 11.22 55.43 0.62 -23.59 16 13 Si 0.89 21.70 29.55 -169.99 -5.02 16.68 16 14 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 C -0.21 -4.93 9.43 -26.70 -0.25 -5.18 16 18 C -0.18 -4.14 8.66 -26.70 -0.23 -4.37 16 19 C -0.10 -2.11 8.19 -39.65 -0.32 -2.43 16 20 C -0.07 -1.30 5.89 -104.50 -0.62 -1.91 16 21 C -0.11 -1.64 9.18 36.01 0.33 -1.31 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.76 6.68 -51.93 -0.35 0.41 16 24 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 25 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.07 1.16 8.06 -52.48 -0.42 0.74 16 27 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 28 H 0.06 1.38 7.13 -51.93 -0.37 1.01 16 29 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 30 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 32 H 0.11 2.50 7.01 -52.48 -0.37 2.13 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.06 0.76 6.68 -51.93 -0.35 0.41 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -29.93 290.35 -7.53 -37.46 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -4.78 Total: -0.09 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -2.80 Total: -25.01 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.62 Total: -23.59 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.93 -7.53 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260203802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.523 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds