Wall clock time and date at job start Mon Mar 30 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.37917 * 119.91189 * 2 1 4 4 C 1.39834 * 119.82068 * 179.75509 * 3 2 1 5 5 C 1.47167 * 120.16839 * 180.29330 * 4 3 2 6 6 O 1.21256 * 120.00323 * 174.44158 * 5 4 3 7 7 C 1.39866 * 119.66159 * 0.51820 * 4 3 2 8 8 C 1.50707 * 120.09092 * 179.77348 * 7 4 3 9 9 C 1.50691 * 115.55041 * 294.56273 * 8 7 4 10 10 H 1.08002 * 120.00200 * 144.79050 * 9 8 7 11 11 C 1.37885 * 120.00192 * 324.79084 * 9 8 7 12 12 N 1.31512 * 119.99794 * 350.31235 * 11 9 8 13 13 Si 1.86796 * 120.00027 * 170.31601 * 11 9 8 14 14 H 1.48502 * 109.47233 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47386 * 119.99945 * 13 11 9 16 16 H 1.48504 * 109.47089 * 239.99957 * 13 11 9 17 17 C 1.52997 * 117.49837 * 148.89267 * 8 7 4 18 18 C 1.52998 * 117.49773 * 80.23535 * 8 7 4 19 19 C 1.37864 * 119.82368 * 359.75778 * 7 4 3 20 20 C 1.38385 * 119.91854 * 180.28007 * 2 1 3 21 21 C 1.50702 * 119.82120 * 359.97438 * 20 2 1 22 22 H 1.09000 * 109.46716 * 269.72224 * 1 2 3 23 23 H 1.09003 * 109.47183 * 149.72916 * 1 2 3 24 24 H 1.08993 * 109.47790 * 29.72195 * 1 2 3 25 25 H 1.08002 * 120.08689 * 0.02562 * 3 2 1 26 26 H 1.08004 * 120.00150 * 354.44326 * 5 4 3 27 27 H 0.96999 * 120.00194 * 185.01349 * 12 11 9 28 28 H 1.09005 * 117.50021 * 0.02562 * 17 8 7 29 29 H 1.09000 * 117.50000 * 145.02162 * 17 8 7 30 30 H 1.09001 * 117.49936 * 214.98324 * 18 8 7 31 31 H 1.09008 * 117.49548 * 359.97438 * 18 8 7 32 32 H 1.08003 * 119.91565 * 179.97438 * 19 7 4 33 33 H 1.08992 * 109.46738 * 90.00576 * 21 20 2 34 34 H 1.09002 * 109.46877 * 210.00017 * 21 20 2 35 35 H 1.08994 * 109.47400 * 329.99953 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1947 1.1955 0.0000 4 6 3.5930 1.1932 0.0052 5 6 4.3346 2.4644 0.0117 6 8 5.5425 2.4612 0.1179 7 6 4.2832 -0.0232 -0.0007 8 6 5.7902 -0.0369 -0.0003 9 6 6.4456 0.5285 -1.2338 10 1 7.3730 1.0757 -1.1501 11 6 5.8614 0.3472 -2.4696 12 7 4.8425 -0.4738 -2.6011 13 14 6.5172 1.2678 -3.9568 14 1 7.6593 2.1231 -3.5455 15 1 6.9715 0.2936 -4.9813 16 1 5.4416 2.1191 -4.5258 17 6 6.4859 -1.2087 0.6952 18 6 6.4983 0.1803 1.3385 19 6 3.5814 -1.2098 -0.0064 20 6 2.1971 -1.1994 -0.0059 21 6 1.4377 -2.5011 -0.0116 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 -0.8876 -0.5180 24 1 -0.3634 0.8924 -0.5095 25 1 1.6546 2.1308 0.0004 26 1 3.8029 3.4002 -0.0780 27 1 4.4779 -0.6573 -3.4810 28 1 5.8536 -1.9700 1.1522 29 1 7.4179 -1.5704 0.2608 30 1 7.4384 0.7318 1.3270 31 1 5.8741 0.3334 2.2189 32 1 4.1129 -2.1500 -0.0113 33 1 1.2543 -2.8101 -1.0406 34 1 2.0236 -3.2658 0.4984 35 1 0.4861 -2.3689 0.5031 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260203802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:55 Heat of formation + Delta-G solvation = -1.261757 kcal Electronic energy + Delta-G solvation = -17994.711303 eV Core-core repulsion = 15343.995448 eV Total energy + Delta-G solvation = -2650.715855 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.88875 -38.84781 -37.80886 -34.10620 -33.64335 -32.64131 -28.72130 -27.90218 -27.04091 -24.18116 -23.41407 -22.56372 -21.52244 -20.15406 -18.15966 -17.36515 -16.60313 -16.51819 -15.74986 -15.38358 -15.21180 -14.93812 -14.60326 -14.45587 -14.26958 -13.58127 -13.47338 -13.18825 -12.91127 -12.88263 -12.80038 -12.50547 -12.21239 -12.10512 -12.04152 -11.82230 -11.22119 -11.09906 -10.73575 -10.31488 -9.78796 -9.31267 -8.93725 -7.96624 -6.03119 0.20276 0.91363 1.32452 1.36758 1.47744 1.97584 2.41987 3.05299 3.22872 3.68510 3.79601 4.10723 4.15911 4.19500 4.43951 4.52805 4.57955 4.75177 4.78092 4.88630 4.92540 4.95084 4.99227 4.99767 5.13064 5.14516 5.19894 5.31689 5.48621 5.55045 5.56676 5.73320 5.85110 5.97819 6.14651 6.44555 6.50595 6.86881 7.06071 7.48654 8.97866 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.010146 C = 0.009573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.670900 B = 2759.174203 C = 2924.132646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.136 4.136 3 C -0.078 4.078 4 C -0.214 4.214 5 C 0.352 3.648 6 O -0.453 6.453 7 C 0.069 3.931 8 C 0.071 3.929 9 C -0.465 4.465 10 H 0.036 0.964 11 C 0.030 3.970 12 N -0.885 5.885 13 Si 0.933 3.067 14 H -0.280 1.280 15 H -0.280 1.280 16 H -0.279 1.279 17 C -0.210 4.210 18 C -0.169 4.169 19 C -0.121 4.121 20 C -0.071 4.071 21 C -0.108 4.108 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.122 0.878 27 H 0.257 0.743 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 0.359 4.980 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.136 4.136 3 C -0.096 4.096 4 C -0.216 4.216 5 C 0.211 3.789 6 O -0.325 6.325 7 C 0.068 3.932 8 C 0.070 3.930 9 C -0.502 4.502 10 H 0.054 0.946 11 C -0.171 4.171 12 N -0.522 5.522 13 Si 0.760 3.240 14 H -0.205 1.205 15 H -0.205 1.205 16 H -0.205 1.205 17 C -0.248 4.248 18 C -0.207 4.207 19 C -0.139 4.139 20 C -0.071 4.071 21 C -0.164 4.164 22 H 0.098 0.902 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.167 0.833 26 H 0.138 0.862 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.629 0.334 4.895 11.707 hybrid contribution 0.970 0.256 -1.127 1.509 sum -9.659 0.590 3.768 10.385 Atomic orbital electron populations 1.20720 0.88787 1.03215 1.02827 1.19871 0.97441 0.91941 1.04304 1.21341 0.91879 0.98891 0.97491 1.20864 0.95166 0.95775 1.09750 1.24301 0.89215 0.92932 0.72481 1.90584 1.18144 1.90209 1.33592 1.19342 0.93755 0.92241 0.87845 1.17732 0.88267 0.96097 0.90885 1.20385 1.06689 1.32861 0.90297 0.94591 1.25428 0.95394 0.95914 1.00395 1.70067 1.24780 1.34442 1.22959 0.85886 0.78319 0.79200 0.80631 1.20470 1.20543 1.20472 1.23153 1.02989 0.91547 1.07091 1.22621 1.01847 0.99023 0.97193 1.20607 0.93748 0.96988 1.02598 1.20193 0.92996 0.96494 0.97439 1.20824 1.00182 0.92934 1.02448 0.90224 0.91037 0.90931 0.83295 0.86230 0.93340 0.90264 0.91225 0.91355 0.90761 0.88579 0.91252 0.91782 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.17 9.18 71.23 0.65 -1.51 16 2 C -0.14 -4.35 5.87 -19.91 -0.12 -4.47 16 3 C -0.08 -2.66 9.44 22.58 0.21 -2.45 16 4 C -0.21 -9.11 5.85 -20.15 -0.12 -9.23 16 5 C 0.35 14.46 11.26 70.17 0.79 15.25 16 6 O -0.45 -22.26 12.48 -2.96 -0.04 -22.29 16 7 C 0.07 3.28 3.35 -19.56 -0.07 3.22 16 8 C 0.07 3.64 0.97 -53.68 -0.05 3.59 16 9 C -0.46 -26.58 6.59 25.60 0.17 -26.41 16 10 H 0.04 2.18 7.83 -2.91 -0.02 2.16 16 11 C 0.03 1.65 5.26 84.66 0.45 2.09 16 12 N -0.89 -49.57 11.22 21.45 0.24 -49.33 16 13 Si 0.93 45.10 29.55 68.60 2.03 47.13 16 14 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 C -0.21 -9.99 9.43 30.62 0.29 -9.70 16 18 C -0.17 -8.01 8.66 30.62 0.27 -7.75 16 19 C -0.12 -5.33 8.19 22.23 0.18 -5.15 16 20 C -0.07 -2.55 5.89 -19.78 -0.12 -2.66 16 21 C -0.11 -2.90 9.18 71.24 0.65 -2.25 16 22 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.07 1.43 6.68 -2.39 -0.02 1.42 16 24 H 0.07 1.40 8.08 -2.39 -0.02 1.38 16 25 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 26 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 27 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 28 H 0.08 3.47 7.13 -2.38 -0.02 3.45 16 29 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 30 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.07 3.26 8.14 -2.38 -0.02 3.25 16 32 H 0.10 4.38 7.01 -2.91 -0.02 4.36 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.67 8.08 -2.39 -0.02 1.65 16 35 H 0.09 1.88 6.68 -2.39 -0.02 1.86 16 Total: -1.00 -66.35 290.35 6.50 -59.85 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.07 Total: 12.07 kcal Atomic # 6 Polarization: -50.63 SS G_CDS: 3.19 Total: -47.43 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.24 Total: -49.33 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.04 Total: -22.29 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -66.35 6.50 -59.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260203802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.592 kcal (2) G-P(sol) polarization free energy of solvation -66.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds