Wall clock time and date at job start Mon Mar 30 2020 06:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86797 * 120.00197 * 2 1 4 4 H 1.48497 * 109.47268 * 275.84707 * 3 2 1 5 5 H 1.48500 * 109.47208 * 35.85135 * 3 2 1 6 6 H 1.48503 * 109.47018 * 155.84758 * 3 2 1 7 7 C 1.38834 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00119 * 348.29769 * 7 2 1 9 9 N 1.36875 * 120.00321 * 168.30322 * 7 2 1 10 10 C 1.38970 * 119.99707 * 307.18318 * 9 7 2 11 11 C 1.39610 * 120.87933 * 180.02562 * 10 9 7 12 12 C 1.37872 * 119.05673 * 179.72855 * 11 10 9 13 13 N 1.32011 * 120.85697 * 359.97438 * 12 11 10 14 14 C 1.31982 * 121.93597 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.56828 * 180.02562 * 14 13 12 16 16 C 1.52998 * 117.49955 * 163.75113 * 15 14 13 17 17 C 1.52999 * 117.50135 * 95.08846 * 15 14 13 18 18 C 1.37916 * 120.85758 * 0.02562 * 14 13 12 19 19 C 1.46498 * 119.99931 * 127.18470 * 9 7 2 20 20 C 1.52991 * 117.50281 * 1.69394 * 19 9 7 21 21 C 1.53000 * 60.00440 * 252.51312 * 20 19 9 22 22 H 0.97003 * 120.00236 * 359.97438 * 1 2 3 23 23 H 1.08007 * 120.46938 * 359.74816 * 11 10 9 24 24 H 1.08003 * 119.57022 * 179.97438 * 12 11 10 25 25 H 1.08999 * 115.55405 * 309.41627 * 15 14 13 26 26 H 1.09007 * 117.49624 * 359.97438 * 16 15 14 27 27 H 1.08999 * 117.50755 * 145.01659 * 16 15 14 28 28 H 1.08999 * 117.50025 * 214.97811 * 17 15 14 29 29 H 1.09006 * 117.49704 * 359.97438 * 17 15 14 30 30 H 1.07997 * 120.47439 * 180.02562 * 18 14 13 31 31 H 1.09001 * 115.54934 * 147.40617 * 19 9 7 32 32 H 1.09002 * 117.49789 * 0.02562 * 20 19 9 33 33 H 1.09000 * 117.50663 * 145.02252 * 20 19 9 34 34 H 1.09003 * 117.49630 * 252.51457 * 21 20 19 35 35 H 1.09000 * 117.50271 * 107.48477 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.3736 2.1177 -1.3927 5 1 1.5143 2.6138 0.8200 6 1 3.6034 1.4075 0.5729 7 6 2.0097 -1.2023 -0.0005 8 1 1.4865 -2.1281 0.1888 9 7 3.3571 -1.2147 -0.2408 10 6 3.8662 -0.5940 -1.3753 11 6 5.2372 -0.5958 -1.6387 12 6 5.7010 0.0265 -2.7783 13 7 4.8673 0.6175 -3.6139 14 6 3.5650 0.6412 -3.4008 15 6 2.6619 1.3309 -4.3907 16 6 1.1660 1.0177 -4.3198 17 6 2.0097 0.4679 -5.4726 18 6 3.0199 0.0430 -2.2841 19 6 4.2625 -1.8821 0.6978 20 6 3.6372 -2.5809 1.9067 21 6 4.4079 -1.2724 2.0936 22 1 -0.4851 0.8401 0.0004 23 1 5.9248 -1.0782 -0.9596 24 1 6.7600 0.0304 -2.9900 25 1 2.9511 2.3460 -4.6631 26 1 0.8352 0.3123 -3.5574 27 1 0.4711 1.8264 -4.5458 28 1 1.8696 0.9152 -6.4567 29 1 2.2342 -0.5988 -5.4688 30 1 1.9534 0.0658 -2.1160 31 1 5.1467 -2.3391 0.2536 32 1 2.5521 -2.5444 2.0034 33 1 4.1099 -3.4980 2.2581 34 1 5.3878 -1.3288 2.5678 35 1 3.8299 -0.3748 2.3134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260213445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:19 Heat of formation + Delta-G solvation = 104.692986 kcal Electronic energy + Delta-G solvation = -17851.119625 eV Core-core repulsion = 15237.291064 eV Total energy + Delta-G solvation = -2613.828561 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.70811 -37.70216 -36.22608 -34.20392 -32.17043 -29.99737 -29.28452 -25.33813 -23.64520 -22.39988 -21.85511 -21.41385 -20.84543 -19.52575 -17.66437 -16.37051 -15.93801 -15.05481 -14.87380 -14.65522 -14.16166 -13.74080 -13.55550 -13.14893 -12.82673 -12.66218 -11.99538 -11.74958 -11.42646 -11.09667 -10.93144 -10.82811 -10.36365 -10.20400 -10.16755 -10.04564 -9.94948 -9.76741 -9.28449 -8.85436 -8.48490 -7.95328 -6.76662 -6.44207 -4.23980 2.04778 2.48929 3.21647 3.30832 3.36628 4.13083 4.18025 4.28047 4.47174 4.69096 4.85951 4.98346 5.32700 5.42656 5.44942 5.55979 5.62610 5.67294 5.74873 5.98043 6.02230 6.09566 6.15129 6.24168 6.26623 6.43645 6.50508 6.59286 6.62098 6.74867 6.82830 6.97737 7.16763 7.54535 7.70803 8.05115 8.53192 9.03020 9.08681 9.38241 10.56873 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021465 B = 0.011246 C = 0.008733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.138072 B = 2489.136934 C = 3205.504264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.076 3.924 3 Si 0.866 3.134 4 H -0.249 1.249 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.331 4.331 8 H 0.098 0.902 9 N -0.440 5.440 10 C 0.248 3.752 11 C -0.284 4.284 12 C 0.128 3.872 13 N -0.552 5.552 14 C 0.178 3.822 15 C -0.098 4.098 16 C -0.176 4.176 17 C -0.165 4.165 18 C -0.242 4.242 19 C 0.076 3.924 20 C -0.171 4.171 21 C -0.201 4.201 22 H 0.276 0.724 23 H 0.118 0.882 24 H 0.138 0.862 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.147 0.853 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.772 -0.190 -2.565 6.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.133 4.133 3 Si 0.692 3.308 4 H -0.174 1.174 5 H -0.220 1.220 6 H -0.188 1.188 7 C -0.459 4.459 8 H 0.116 0.884 9 N -0.132 5.132 10 C 0.130 3.870 11 C -0.311 4.311 12 C -0.028 4.028 13 N -0.267 5.267 14 C 0.044 3.956 15 C -0.117 4.117 16 C -0.213 4.213 17 C -0.202 4.202 18 C -0.268 4.268 19 C -0.029 4.029 20 C -0.209 4.209 21 C -0.240 4.240 22 H 0.086 0.914 23 H 0.136 0.864 24 H 0.156 0.844 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.164 0.836 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.782 0.190 -3.099 6.563 hybrid contribution 0.060 0.498 1.067 1.179 sum 5.842 0.688 -2.032 6.223 Atomic orbital electron populations 1.69750 1.06100 1.28317 1.45766 1.25622 0.95235 0.98740 0.93660 0.87126 0.80573 0.83060 0.80001 1.17358 1.21978 1.18802 1.18817 0.80146 0.95074 1.51856 0.88413 1.41887 1.05162 1.50540 1.15567 1.18278 0.91843 0.90858 0.85992 1.21407 0.94363 1.12386 1.02994 1.22055 0.98244 0.92617 0.89888 1.67252 1.03445 1.23537 1.32455 1.19797 0.89965 0.93752 0.92133 1.20647 0.92754 0.99169 0.99119 1.23118 0.92777 1.03882 1.01506 1.22890 1.03952 0.99804 0.93600 1.21605 1.02071 1.06293 0.96840 1.21701 0.95660 1.00635 0.84917 1.23125 1.01659 0.94895 1.01227 1.23287 1.01044 0.98019 1.01667 0.91359 0.86393 0.84414 0.87139 0.87514 0.88742 0.88914 0.88900 0.83565 0.87304 0.87132 0.89463 0.89593 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.73 13.96 55.49 0.77 -22.95 16 2 C 0.08 2.00 4.06 -17.45 -0.07 1.93 16 3 Si 0.87 21.40 24.24 -169.99 -4.12 17.27 16 4 H -0.25 -6.13 6.07 56.52 0.34 -5.79 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.33 -8.55 7.92 -15.08 -0.12 -8.67 16 8 H 0.10 2.70 7.63 -52.48 -0.40 2.30 16 9 N -0.44 -10.21 2.40 -105.85 -0.25 -10.47 16 10 C 0.25 5.73 5.00 -83.62 -0.42 5.31 16 11 C -0.28 -5.77 9.34 -39.20 -0.37 -6.14 16 12 C 0.13 2.48 11.17 -17.61 -0.20 2.29 16 13 N -0.55 -11.74 10.27 -9.57 -0.10 -11.84 16 14 C 0.18 3.88 6.34 -82.65 -0.52 3.35 16 15 C -0.10 -1.83 6.21 -91.77 -0.57 -2.40 16 16 C -0.18 -3.04 9.80 -26.69 -0.26 -3.30 16 17 C -0.16 -2.63 10.24 -26.69 -0.27 -2.90 16 18 C -0.24 -5.69 5.10 -39.20 -0.20 -5.89 16 19 C 0.08 1.48 5.78 -67.93 -0.39 1.09 16 20 C -0.17 -3.00 9.82 -26.74 -0.26 -3.27 16 21 C -0.20 -3.60 10.38 -26.73 -0.28 -3.88 16 22 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 23 H 0.12 2.09 6.41 -52.48 -0.34 1.76 16 24 H 0.14 2.15 8.06 -52.48 -0.42 1.72 16 25 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 26 H 0.11 2.11 6.39 -51.92 -0.33 1.77 16 27 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.15 3.67 3.37 -52.49 -0.18 3.49 16 31 H 0.11 1.86 6.80 -51.93 -0.35 1.50 16 32 H 0.11 2.19 6.81 -51.93 -0.35 1.83 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 283.07 15.07 4.27 4.27 Total: -1.00 -28.46 283.07 -7.89 -36.35 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -4.53 Total: 9.85 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -3.93 Total: -22.49 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.42 Total: -45.26 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.12 Total: 17.27 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.46 -7.89 -36.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.046 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds