Wall clock time and date at job start Mon Mar 30 2020 06:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86797 * 120.00197 * 2 1 4 4 H 1.48497 * 109.47268 * 275.84707 * 3 2 1 5 5 H 1.48500 * 109.47208 * 35.85135 * 3 2 1 6 6 H 1.48503 * 109.47018 * 155.84758 * 3 2 1 7 7 C 1.38834 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00119 * 348.29769 * 7 2 1 9 9 N 1.36875 * 120.00321 * 168.30322 * 7 2 1 10 10 C 1.38970 * 119.99707 * 307.18318 * 9 7 2 11 11 C 1.39610 * 120.87933 * 180.02562 * 10 9 7 12 12 C 1.37872 * 119.05673 * 179.72855 * 11 10 9 13 13 N 1.32011 * 120.85697 * 359.97438 * 12 11 10 14 14 C 1.31982 * 121.93597 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.56828 * 180.02562 * 14 13 12 16 16 C 1.52998 * 117.49955 * 163.75113 * 15 14 13 17 17 C 1.52999 * 117.50135 * 95.08846 * 15 14 13 18 18 C 1.37916 * 120.85758 * 0.02562 * 14 13 12 19 19 C 1.46498 * 119.99931 * 127.18470 * 9 7 2 20 20 C 1.52991 * 117.50281 * 1.69394 * 19 9 7 21 21 C 1.53000 * 60.00440 * 252.51312 * 20 19 9 22 22 H 0.97003 * 120.00236 * 359.97438 * 1 2 3 23 23 H 1.08007 * 120.46938 * 359.74816 * 11 10 9 24 24 H 1.08003 * 119.57022 * 179.97438 * 12 11 10 25 25 H 1.08999 * 115.55405 * 309.41627 * 15 14 13 26 26 H 1.09007 * 117.49624 * 359.97438 * 16 15 14 27 27 H 1.08999 * 117.50755 * 145.01659 * 16 15 14 28 28 H 1.08999 * 117.50025 * 214.97811 * 17 15 14 29 29 H 1.09006 * 117.49704 * 359.97438 * 17 15 14 30 30 H 1.07997 * 120.47439 * 180.02562 * 18 14 13 31 31 H 1.09001 * 115.54934 * 147.40617 * 19 9 7 32 32 H 1.09002 * 117.49789 * 0.02562 * 20 19 9 33 33 H 1.09000 * 117.50663 * 145.02252 * 20 19 9 34 34 H 1.09003 * 117.49630 * 252.51457 * 21 20 19 35 35 H 1.09000 * 117.50271 * 107.48477 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.3736 2.1177 -1.3927 5 1 1.5143 2.6138 0.8200 6 1 3.6034 1.4075 0.5729 7 6 2.0097 -1.2023 -0.0005 8 1 1.4865 -2.1281 0.1888 9 7 3.3571 -1.2147 -0.2408 10 6 3.8662 -0.5940 -1.3753 11 6 5.2372 -0.5958 -1.6387 12 6 5.7010 0.0265 -2.7783 13 7 4.8673 0.6175 -3.6139 14 6 3.5650 0.6412 -3.4008 15 6 2.6619 1.3309 -4.3907 16 6 1.1660 1.0177 -4.3198 17 6 2.0097 0.4679 -5.4726 18 6 3.0199 0.0430 -2.2841 19 6 4.2625 -1.8821 0.6978 20 6 3.6372 -2.5809 1.9067 21 6 4.4079 -1.2724 2.0936 22 1 -0.4851 0.8401 0.0004 23 1 5.9248 -1.0782 -0.9596 24 1 6.7600 0.0304 -2.9900 25 1 2.9511 2.3460 -4.6631 26 1 0.8352 0.3123 -3.5574 27 1 0.4711 1.8264 -4.5458 28 1 1.8696 0.9152 -6.4567 29 1 2.2342 -0.5988 -5.4688 30 1 1.9534 0.0658 -2.1160 31 1 5.1467 -2.3391 0.2536 32 1 2.5521 -2.5444 2.0034 33 1 4.1099 -3.4980 2.2581 34 1 5.3878 -1.3288 2.5678 35 1 3.8299 -0.3748 2.3134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260213445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:19 Heat of formation + Delta-G solvation = 88.572976 kcal Electronic energy + Delta-G solvation = -17851.818642 eV Core-core repulsion = 15237.291064 eV Total energy + Delta-G solvation = -2614.527578 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.34039 -39.26188 -37.65570 -35.87170 -34.08627 -31.60372 -31.00599 -27.17406 -25.23098 -23.91675 -23.26714 -22.85715 -22.41152 -21.20328 -19.39270 -18.02731 -17.65994 -16.75696 -16.42171 -16.17958 -15.74161 -15.47496 -15.13895 -14.76697 -14.66715 -14.33266 -13.59723 -13.49442 -13.02707 -12.66698 -12.49854 -12.37420 -12.13865 -11.98584 -11.83480 -11.56015 -11.32412 -11.20773 -11.05606 -10.68667 -10.13851 -9.56837 -8.66054 -8.37746 -6.25534 0.41656 0.80603 1.22242 1.30071 1.33253 2.14705 2.58782 2.74477 2.82578 3.04350 3.26545 3.45459 3.92675 4.01281 4.05136 4.11759 4.18226 4.23192 4.31027 4.45041 4.63460 4.64236 4.75032 4.80754 4.87410 4.97738 5.07810 5.11607 5.14876 5.23472 5.36510 5.39749 5.47423 5.66782 6.00727 6.02668 6.70141 7.15425 7.40125 7.48133 8.56432 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021465 B = 0.011246 C = 0.008733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.138072 B = 2489.136934 C = 3205.504264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.047 3.953 3 Si 0.916 3.084 4 H -0.251 1.251 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.320 4.320 8 H 0.067 0.933 9 N -0.458 5.458 10 C 0.228 3.772 11 C -0.282 4.282 12 C 0.131 3.869 13 N -0.559 5.559 14 C 0.173 3.827 15 C -0.121 4.121 16 C -0.181 4.181 17 C -0.138 4.138 18 C -0.271 4.271 19 C 0.056 3.944 20 C -0.163 4.163 21 C -0.192 4.192 22 H 0.277 0.723 23 H 0.148 0.852 24 H 0.184 0.816 25 H 0.125 0.875 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.130 0.870 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.140 0.860 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.506 -0.086 -3.411 9.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.157 4.157 3 Si 0.742 3.258 4 H -0.176 1.176 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.448 4.448 8 H 0.084 0.916 9 N -0.151 5.151 10 C 0.111 3.889 11 C -0.308 4.308 12 C -0.025 4.025 13 N -0.274 5.274 14 C 0.038 3.962 15 C -0.140 4.140 16 C -0.218 4.218 17 C -0.176 4.176 18 C -0.297 4.297 19 C -0.049 4.049 20 C -0.201 4.201 21 C -0.231 4.231 22 H 0.087 0.913 23 H 0.166 0.834 24 H 0.200 0.800 25 H 0.143 0.857 26 H 0.091 0.909 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.101 0.899 30 H 0.140 0.860 31 H 0.157 0.843 32 H 0.096 0.904 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.539 0.287 -3.945 9.411 hybrid contribution -0.707 0.381 1.262 1.496 sum 7.832 0.668 -2.683 8.306 Atomic orbital electron populations 1.69812 1.07124 1.28770 1.48351 1.25972 0.95445 1.00498 0.93819 0.86371 0.79135 0.80919 0.79357 1.17596 1.22401 1.19535 1.18540 0.81891 0.93696 1.50685 0.91555 1.41948 1.04581 1.51763 1.16846 1.18664 0.93309 0.90842 0.86085 1.21752 0.93329 1.12040 1.03717 1.22811 1.00061 0.90772 0.88847 1.67394 1.03207 1.23840 1.32991 1.20221 0.90760 0.93111 0.92059 1.20823 0.92755 1.00238 1.00150 1.23082 0.92795 1.04215 1.01725 1.22980 1.01083 0.99098 0.94411 1.21588 1.01181 1.08462 0.98463 1.22054 0.96278 1.01552 0.84979 1.23136 1.00099 0.96605 1.00232 1.23310 1.02460 0.96728 1.00628 0.91285 0.83431 0.79958 0.85683 0.90863 0.86344 0.85236 0.89851 0.86013 0.84294 0.90395 0.85470 0.85582 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.02 13.96 21.65 0.30 -51.72 16 2 C 0.05 2.59 4.06 84.88 0.34 2.94 16 3 Si 0.92 45.77 24.24 68.60 1.66 47.44 16 4 H -0.25 -12.49 6.07 99.48 0.60 -11.89 16 5 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 6 H -0.27 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.32 -17.17 7.92 84.05 0.67 -16.51 16 8 H 0.07 3.91 7.63 -2.91 -0.02 3.88 16 9 N -0.46 -21.32 2.40 -488.79 -1.17 -22.49 16 10 C 0.23 10.37 5.00 38.66 0.19 10.56 16 11 C -0.28 -10.64 9.34 22.51 0.21 -10.43 16 12 C 0.13 4.61 11.17 84.58 0.94 5.56 16 13 N -0.56 -22.48 10.27 -184.19 -1.89 -24.37 16 14 C 0.17 7.40 6.34 42.46 0.27 7.67 16 15 C -0.12 -4.36 6.21 -11.54 -0.07 -4.43 16 16 C -0.18 -6.22 9.80 30.62 0.30 -5.92 16 17 C -0.14 -4.15 10.24 30.62 0.31 -3.83 16 18 C -0.27 -12.84 5.10 22.52 0.11 -12.73 16 19 C 0.06 2.06 5.78 44.99 0.26 2.32 16 20 C -0.16 -5.49 9.82 30.59 0.30 -5.19 16 21 C -0.19 -6.50 10.38 30.60 0.32 -6.19 16 22 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 23 H 0.15 4.59 6.41 -2.91 -0.02 4.58 16 24 H 0.18 4.72 8.06 -2.91 -0.02 4.70 16 25 H 0.13 4.10 8.14 -2.39 -0.02 4.08 16 26 H 0.07 3.04 6.39 -2.38 -0.02 3.02 16 27 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 28 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 30 H 0.12 6.38 3.37 -2.91 -0.01 6.37 16 31 H 0.14 4.22 6.80 -2.39 -0.02 4.21 16 32 H 0.08 3.16 6.81 -2.39 -0.02 3.14 16 33 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -64.14 283.07 4.05 -60.09 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.99 Total: 27.25 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 4.16 Total: -36.20 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -2.76 Total: -98.58 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.66 Total: 47.44 kcal Total: -64.14 4.05 -60.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.661 kcal (2) G-P(sol) polarization free energy of solvation -64.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds