Wall clock time and date at job start Mon Mar 30 2020 05:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.34445 * 124.92262 * 2 1 4 4 C 1.34807 * 110.88997 * 180.02562 * 3 2 1 5 5 C 1.38944 * 133.49703 * 180.32642 * 4 3 2 6 6 C 1.37845 * 119.81806 * 180.20064 * 5 4 3 7 7 C 1.50697 * 119.65961 * 179.72561 * 6 5 4 8 8 C 1.52997 * 109.47466 * 269.73068 * 7 6 5 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 C 1.38745 * 120.68389 * 359.45404 * 6 5 4 18 18 C 1.36739 * 120.41698 * 0.25530 * 17 6 5 19 19 C 1.39403 * 119.71676 * 0.02562 * 18 17 6 20 20 C 1.33987 * 124.92106 * 179.97438 * 2 1 3 21 21 C 1.50706 * 126.90915 * 0.02562 * 20 2 1 22 22 H 1.08998 * 109.46932 * 270.00536 * 1 2 3 23 23 H 1.09001 * 109.46850 * 29.99661 * 1 2 3 24 24 H 1.08995 * 109.47223 * 150.00381 * 1 2 3 25 25 H 1.08007 * 120.09004 * 359.95034 * 5 4 3 26 26 H 1.09002 * 109.47120 * 149.72821 * 7 6 5 27 27 H 1.08998 * 109.46862 * 29.73623 * 7 6 5 28 28 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 29 29 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 30 30 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 31 31 H 1.08003 * 119.79093 * 180.27266 * 17 6 5 32 32 H 1.07998 * 120.14248 * 180.02562 * 18 17 6 33 33 H 1.08998 * 109.46938 * 269.97031 * 21 20 2 34 34 H 1.08994 * 109.47270 * 29.97251 * 21 20 2 35 35 H 1.08997 * 109.46529 * 149.97470 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2767 1.1023 0.0000 4 6 3.5846 0.7755 -0.0006 5 6 4.7568 1.5214 0.0049 6 6 5.9771 0.8804 -0.0017 7 6 7.2463 1.6930 -0.0020 8 6 7.6750 1.9688 -1.4445 9 6 8.9439 2.7819 -1.4447 10 1 9.3992 3.0725 -0.5095 11 6 9.5240 3.1540 -2.6389 12 7 8.9699 2.7997 -3.7777 13 14 11.0972 4.1612 -2.6391 14 1 12.1682 3.4068 -1.9397 15 1 11.5132 4.4290 -4.0393 16 1 10.8605 5.4491 -1.9386 17 6 6.0491 -0.5052 -0.0025 18 6 4.9074 -1.2577 -0.0020 19 6 3.6642 -0.6271 -0.0011 20 6 2.2741 -1.0986 0.0005 21 6 1.8041 -2.5305 0.0006 22 1 -0.3633 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5137 25 1 4.7119 2.6005 0.0103 26 1 8.0324 1.1391 0.5112 27 1 7.0726 2.6381 0.5125 28 1 6.8889 2.5227 -1.9577 29 1 7.8487 1.0236 -1.9589 30 1 9.3779 3.0617 -4.6178 31 1 7.0130 -0.9924 -0.0033 32 1 4.9686 -2.3359 -0.0022 33 1 1.6910 -2.8757 1.0283 34 1 0.8452 -2.5983 -0.5131 35 1 2.5365 -3.1532 -0.5133 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260214284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:48 Heat of formation + Delta-G solvation = -0.982462 kcal Electronic energy + Delta-G solvation = -16525.685005 eV Core-core repulsion = 13874.981261 eV Total energy + Delta-G solvation = -2650.703744 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.23565 -38.01158 -34.46611 -33.72287 -31.99811 -30.40772 -29.77160 -28.19998 -26.27206 -24.34906 -22.72899 -21.59312 -20.31852 -19.23798 -16.74481 -16.54732 -16.23571 -16.12484 -14.77995 -14.46342 -13.92210 -13.71138 -13.42634 -13.30800 -13.07570 -12.78416 -12.48782 -12.45608 -12.22552 -11.92750 -11.71889 -11.34853 -10.99560 -10.90159 -10.68175 -10.48133 -9.85125 -9.74182 -9.25157 -9.10084 -8.35040 -8.20094 -7.61887 -5.99143 -4.02634 1.22525 1.74116 2.48960 2.90821 3.34065 3.38520 3.40810 4.08157 4.46485 4.51470 4.83904 4.93180 5.10607 5.21721 5.25341 5.36320 5.44681 5.47128 5.58240 5.68809 5.72102 5.74622 5.84123 5.92680 6.19801 6.34397 6.52706 6.62068 6.66493 6.73969 6.90925 7.03701 7.11205 7.49235 7.67729 7.81019 8.00228 8.40045 9.04090 9.61385 11.11837 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.045379 B = 0.004271 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.875752 B = 6554.863444 C = 6758.991510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.013 3.987 3 O -0.196 6.196 4 C 0.058 3.942 5 C -0.114 4.114 6 C -0.028 4.028 7 C -0.079 4.079 8 C 0.029 3.971 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.129 4.129 18 C -0.074 4.074 19 C -0.143 4.143 20 C -0.178 4.178 21 C -0.077 4.077 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.130 0.870 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.261 0.739 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 -8.865 8.246 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.034 4.034 3 O -0.098 6.098 4 C 0.011 3.989 5 C -0.132 4.132 6 C -0.028 4.028 7 C -0.116 4.116 8 C -0.008 4.008 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.147 4.147 18 C -0.092 4.092 19 C -0.144 4.144 20 C -0.180 4.180 21 C -0.134 4.134 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.148 0.852 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.186 -8.583 8.046 19.210 hybrid contribution 0.953 0.502 -0.217 1.099 sum -14.232 -8.081 7.829 18.142 Atomic orbital electron populations 1.20350 0.85316 1.04019 1.03415 1.21954 0.93630 0.83705 1.04154 1.83903 1.15313 1.33658 1.76941 1.19572 0.82730 0.93502 1.03084 1.19835 0.87435 0.99784 1.06167 1.20151 0.94884 0.93974 0.93801 1.20876 0.91222 0.97488 1.02020 1.19090 0.96123 0.97034 0.88545 1.21210 1.08885 1.33755 0.92363 0.92566 1.25021 0.97521 0.96181 0.95633 1.69965 1.39895 1.46150 0.97292 0.86647 0.83643 0.80697 0.76945 1.20206 1.21295 1.20218 1.20756 0.98271 0.93480 1.02241 1.20159 0.90178 0.99387 0.99491 1.19674 0.93452 0.92974 1.08278 1.20785 0.91106 0.95950 1.10119 1.20119 1.00850 0.90580 1.01807 0.90075 0.90450 0.89389 0.85217 0.91709 0.91910 0.96339 0.96292 0.92908 0.85353 0.86158 0.91576 0.91686 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.18 36.01 0.37 -0.27 16 2 C 0.01 0.18 7.23 -35.80 -0.26 -0.08 16 3 O -0.20 -3.30 10.58 3.93 0.04 -3.26 16 4 C 0.06 1.05 7.42 -38.47 -0.29 0.76 16 5 C -0.11 -2.12 9.70 -39.46 -0.38 -2.50 16 6 C -0.03 -0.53 5.13 -104.58 -0.54 -1.07 16 7 C -0.08 -1.64 5.27 -27.89 -0.15 -1.79 16 8 C 0.03 0.76 4.95 -27.88 -0.14 0.62 16 9 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 13 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C -0.13 -2.23 9.62 -39.94 -0.38 -2.61 16 18 C -0.07 -1.18 10.05 -39.69 -0.40 -1.58 16 19 C -0.14 -2.40 6.38 -105.16 -0.67 -3.07 16 20 C -0.18 -2.49 6.35 -102.66 -0.65 -3.14 16 21 C -0.08 -0.76 10.18 36.01 0.37 -0.39 16 22 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.09 0.57 7.06 -51.93 -0.37 0.21 16 25 H 0.13 2.29 8.06 -52.48 -0.42 1.87 16 26 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 27 H 0.06 1.26 8.07 -51.93 -0.42 0.84 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.51 7.08 -51.93 -0.37 0.14 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 301.14 15.07 4.54 4.54 Total: -1.00 -32.05 301.14 -8.16 -40.21 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -4.92 Total: -3.07 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -3.53 Total: -28.69 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.74 Total: -26.39 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: 0.04 Total: -3.26 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.05 -8.16 -40.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260214284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.230 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds