Wall clock time and date at job start Mon Mar 30 2020 05:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.34445 * 124.92262 * 2 1 4 4 C 1.34807 * 110.88997 * 180.02562 * 3 2 1 5 5 C 1.38944 * 133.49703 * 180.32642 * 4 3 2 6 6 C 1.37845 * 119.81806 * 180.20064 * 5 4 3 7 7 C 1.50697 * 119.65961 * 179.72561 * 6 5 4 8 8 C 1.52997 * 109.47466 * 269.73068 * 7 6 5 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 C 1.38745 * 120.68389 * 359.45404 * 6 5 4 18 18 C 1.36739 * 120.41698 * 0.25530 * 17 6 5 19 19 C 1.39403 * 119.71676 * 0.02562 * 18 17 6 20 20 C 1.33987 * 124.92106 * 179.97438 * 2 1 3 21 21 C 1.50706 * 126.90915 * 0.02562 * 20 2 1 22 22 H 1.08998 * 109.46932 * 270.00536 * 1 2 3 23 23 H 1.09001 * 109.46850 * 29.99661 * 1 2 3 24 24 H 1.08995 * 109.47223 * 150.00381 * 1 2 3 25 25 H 1.08007 * 120.09004 * 359.95034 * 5 4 3 26 26 H 1.09002 * 109.47120 * 149.72821 * 7 6 5 27 27 H 1.08998 * 109.46862 * 29.73623 * 7 6 5 28 28 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 29 29 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 30 30 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 31 31 H 1.08003 * 119.79093 * 180.27266 * 17 6 5 32 32 H 1.07998 * 120.14248 * 180.02562 * 18 17 6 33 33 H 1.08998 * 109.46938 * 269.97031 * 21 20 2 34 34 H 1.08994 * 109.47270 * 29.97251 * 21 20 2 35 35 H 1.08997 * 109.46529 * 149.97470 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2767 1.1023 0.0000 4 6 3.5846 0.7755 -0.0006 5 6 4.7568 1.5214 0.0049 6 6 5.9771 0.8804 -0.0017 7 6 7.2463 1.6930 -0.0020 8 6 7.6750 1.9688 -1.4445 9 6 8.9439 2.7819 -1.4447 10 1 9.3992 3.0725 -0.5095 11 6 9.5240 3.1540 -2.6389 12 7 8.9699 2.7997 -3.7777 13 14 11.0972 4.1612 -2.6391 14 1 12.1682 3.4068 -1.9397 15 1 11.5132 4.4290 -4.0393 16 1 10.8605 5.4491 -1.9386 17 6 6.0491 -0.5052 -0.0025 18 6 4.9074 -1.2577 -0.0020 19 6 3.6642 -0.6271 -0.0011 20 6 2.2741 -1.0986 0.0005 21 6 1.8041 -2.5305 0.0006 22 1 -0.3633 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5137 25 1 4.7119 2.6005 0.0103 26 1 8.0324 1.1391 0.5112 27 1 7.0726 2.6381 0.5125 28 1 6.8889 2.5227 -1.9577 29 1 7.8487 1.0236 -1.9589 30 1 9.3779 3.0617 -4.6178 31 1 7.0130 -0.9924 -0.0033 32 1 4.9686 -2.3359 -0.0022 33 1 1.6910 -2.8757 1.0283 34 1 0.8452 -2.5983 -0.5131 35 1 2.5365 -3.1532 -0.5133 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260214284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:48 Heat of formation + Delta-G solvation = -17.949355 kcal Electronic energy + Delta-G solvation = -16526.420744 eV Core-core repulsion = 13874.981261 eV Total energy + Delta-G solvation = -2651.439484 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.44238 -39.38928 -35.92104 -35.25771 -33.72808 -31.61770 -31.17411 -29.39627 -27.64792 -25.95466 -24.02612 -23.34893 -21.72238 -20.51185 -18.54960 -17.90980 -17.71120 -17.32463 -16.53045 -16.12429 -15.18921 -14.89398 -14.57744 -14.43279 -14.21046 -14.07562 -13.92630 -13.72930 -13.46518 -13.19826 -12.93923 -12.80287 -12.64101 -12.45701 -12.43859 -11.93944 -11.72659 -11.57051 -11.22095 -10.57235 -10.54471 -9.54548 -8.85774 -8.19624 -6.32320 -0.03832 0.38145 1.34356 1.40907 1.44314 1.52220 1.76484 2.41275 2.72576 3.13207 3.45125 3.68019 3.92920 4.01294 4.16095 4.27358 4.37854 4.49461 4.57351 4.66600 4.70957 4.80606 4.83286 4.89044 4.98706 5.04313 5.07946 5.17812 5.25661 5.36965 5.48387 5.50150 5.64573 5.75405 5.81613 5.83147 6.20982 6.23959 6.84322 7.37282 8.91821 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.045379 B = 0.004271 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.875752 B = 6554.863444 C = 6758.991510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.007 3.993 3 O -0.214 6.214 4 C 0.030 3.970 5 C -0.127 4.127 6 C -0.050 4.050 7 C -0.063 4.063 8 C 0.036 3.964 9 C -0.545 4.545 10 H 0.066 0.934 11 C -0.001 4.001 12 N -0.935 5.935 13 Si 0.968 3.032 14 H -0.264 1.264 15 H -0.284 1.284 16 H -0.267 1.267 17 C -0.138 4.138 18 C -0.070 4.070 19 C -0.152 4.152 20 C -0.189 4.189 21 C -0.075 4.075 22 H 0.101 0.899 23 H 0.081 0.919 24 H 0.115 0.885 25 H 0.125 0.875 26 H 0.076 0.924 27 H 0.065 0.935 28 H -0.014 1.014 29 H -0.007 1.007 30 H 0.264 0.736 31 H 0.141 0.859 32 H 0.154 0.846 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.974 -10.098 9.139 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.040 4.040 3 O -0.117 6.117 4 C -0.017 4.017 5 C -0.146 4.146 6 C -0.051 4.051 7 C -0.100 4.100 8 C -0.001 4.001 9 C -0.583 4.583 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.792 3.208 14 H -0.189 1.189 15 H -0.210 1.210 16 H -0.191 1.191 17 C -0.156 4.156 18 C -0.087 4.087 19 C -0.153 4.153 20 C -0.190 4.190 21 C -0.131 4.131 22 H 0.120 0.880 23 H 0.100 0.900 24 H 0.133 0.867 25 H 0.143 0.857 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.004 0.996 29 H 0.012 0.988 30 H 0.072 0.928 31 H 0.159 0.841 32 H 0.172 0.828 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.062 -9.823 8.959 20.850 hybrid contribution 1.072 0.848 -0.497 1.454 sum -14.990 -8.976 8.463 19.413 Atomic orbital electron populations 1.20622 0.81526 1.05578 1.05166 1.23022 0.95645 0.82772 1.02540 1.83897 1.15018 1.35559 1.77214 1.19700 0.83226 0.94465 1.04299 1.19868 0.88145 0.99822 1.06736 1.20007 0.94037 0.94829 0.96195 1.20592 0.92665 0.98323 0.98462 1.18925 0.94764 0.94970 0.91463 1.21680 1.09669 1.33988 0.92968 0.91599 1.26016 1.01351 0.97351 0.95114 1.70115 1.41792 1.47528 0.98048 0.85462 0.79027 0.79144 0.77181 1.18854 1.20953 1.19149 1.20948 0.99591 0.92808 1.02260 1.20492 0.89318 1.00961 0.97971 1.20193 0.95334 0.92630 1.07177 1.21282 0.89438 0.98208 1.10069 1.20247 1.02009 0.87634 1.03198 0.88044 0.89970 0.86694 0.85682 0.90557 0.91616 0.99593 0.98830 0.92775 0.84091 0.82817 0.90053 0.89167 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.18 71.24 0.73 -0.29 16 2 C 0.01 0.17 7.23 24.72 0.18 0.35 16 3 O -0.21 -7.25 10.58 -8.87 -0.09 -7.34 16 4 C 0.03 1.11 7.42 22.99 0.17 1.28 16 5 C -0.13 -4.98 9.70 22.35 0.22 -4.76 16 6 C -0.05 -1.99 5.13 -19.84 -0.10 -2.09 16 7 C -0.06 -2.72 5.27 29.85 0.16 -2.56 16 8 C 0.04 1.96 4.95 29.85 0.15 2.11 16 9 C -0.55 -31.47 9.11 25.60 0.23 -31.23 16 10 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 11 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 12 N -0.93 -58.19 13.29 21.45 0.28 -57.90 16 13 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 17 C -0.14 -4.77 9.62 22.04 0.21 -4.56 16 18 C -0.07 -2.14 10.05 22.20 0.22 -1.92 16 19 C -0.15 -5.01 6.38 -20.21 -0.13 -5.14 16 20 C -0.19 -4.88 6.35 -18.59 -0.12 -5.00 16 21 C -0.07 -1.20 10.18 71.24 0.73 -0.48 16 22 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.11 1.00 7.06 -2.39 -0.02 0.98 16 25 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 26 H 0.08 3.05 8.08 -2.39 -0.02 3.03 16 27 H 0.07 2.72 8.07 -2.39 -0.02 2.70 16 28 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 32 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.00 7.08 -2.39 -0.02 0.99 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -71.42 301.14 6.39 -65.03 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.07 Total: 7.42 kcal Atomic # 6 Polarization: -56.97 SS G_CDS: 3.10 Total: -53.86 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.28 Total: -57.90 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.09 Total: -7.34 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -71.42 6.39 -65.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260214284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.080 kcal (2) G-P(sol) polarization free energy of solvation -71.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds