Wall clock time and date at job start Mon Mar 30 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00085 * 2 1 4 4 H 1.48505 * 109.47031 * 270.00410 * 3 2 1 5 5 H 1.48503 * 109.46744 * 29.99946 * 3 2 1 6 6 H 1.48498 * 109.47135 * 149.99899 * 3 2 1 7 7 C 1.37878 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00151 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46952 * 179.97438 * 10 9 7 12 12 C 1.38131 * 120.03751 * 265.29755 * 11 10 9 13 13 C 1.38263 * 120.06865 * 180.27886 * 12 11 10 14 14 C 1.38303 * 120.15125 * 359.72222 * 13 12 11 15 15 C 1.38087 * 120.06761 * 359.97438 * 14 13 12 16 16 C 1.38876 * 120.03483 * 85.00291 * 11 10 9 17 17 N 1.39845 * 120.07277 * 359.97438 * 16 11 10 18 18 C 1.36437 * 125.84458 * 269.75288 * 17 16 11 19 19 N 1.28263 * 114.55081 * 179.72585 * 18 17 16 20 20 C 1.46966 * 110.20048 * 0.27630 * 19 18 17 21 21 C 1.47292 * 125.83766 * 89.94253 * 17 16 11 22 22 H 0.96994 * 119.99876 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47392 * 59.99648 * 9 7 2 24 24 H 1.09004 * 109.46849 * 300.00258 * 9 7 2 25 25 H 1.09003 * 109.46996 * 60.00209 * 10 9 7 26 26 H 1.08996 * 109.47084 * 299.99798 * 10 9 7 27 27 H 1.07997 * 119.96590 * 359.97438 * 12 11 10 28 28 H 1.08004 * 119.92298 * 179.74621 * 13 12 11 29 29 H 1.07999 * 119.97036 * 179.97438 * 14 13 12 30 30 H 1.08000 * 120.03445 * 180.02562 * 15 14 13 31 31 H 1.08002 * 122.72720 * 0.02562 * 18 17 16 32 32 H 1.08998 * 110.55134 * 118.58943 * 20 19 18 33 33 H 1.09003 * 110.54748 * 241.25600 * 20 19 18 34 34 H 1.08998 * 110.89785 * 61.73970 * 21 17 16 35 35 H 1.09002 * 110.65035 * 298.59155 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 0.0001 12 6 1.2315 -5.6147 1.1922 13 6 0.5452 -6.8150 1.1930 14 6 0.1123 -7.3685 0.0018 15 6 0.3640 -6.7232 -1.1928 16 6 1.0532 -5.5172 -1.1973 17 7 1.3094 -4.8609 -2.4053 18 6 0.4992 -3.9389 -3.0011 19 7 0.9494 -3.4687 -4.1063 20 6 2.2461 -4.0814 -4.4276 21 6 2.4982 -5.0497 -3.2541 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 0.8895 26 1 2.8720 -3.6044 -0.8905 27 1 1.5685 -5.1854 2.1240 28 1 0.3465 -7.3213 2.1261 29 1 -0.4231 -8.3064 0.0059 30 1 0.0253 -7.1557 -2.1226 31 1 -0.4424 -3.6265 -2.5743 32 1 2.1883 -4.6279 -5.3689 33 1 3.0268 -3.3221 -4.4745 34 1 2.5625 -6.0779 -3.6102 35 1 3.4039 -4.7730 -2.7143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260223423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:59 Heat of formation + Delta-G solvation = 54.422751 kcal Electronic energy + Delta-G solvation = -17346.533596 eV Core-core repulsion = 14730.525154 eV Total energy + Delta-G solvation = -2616.008442 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25056 -38.38919 -34.15393 -32.97438 -32.01540 -29.69911 -29.28397 -28.35252 -25.06149 -22.94904 -22.10600 -21.49828 -20.55411 -19.64775 -17.47509 -16.36067 -15.98661 -15.39937 -14.67201 -14.47919 -14.15808 -13.97327 -13.08376 -13.00789 -12.64081 -12.49357 -12.14842 -11.96725 -11.89900 -11.45331 -11.28069 -11.09380 -10.88686 -10.70897 -10.45709 -9.82265 -9.69076 -9.56846 -9.10586 -8.58050 -8.32847 -8.18981 -7.60480 -5.98789 -4.01120 1.46921 1.64861 3.03259 3.33802 3.39916 3.42159 3.43245 3.94634 4.47722 4.85577 5.11008 5.13862 5.15138 5.25689 5.32780 5.37776 5.57299 5.61134 5.78504 5.81604 5.94519 6.13879 6.17513 6.29972 6.39702 6.57987 6.61991 6.72123 6.73123 6.94713 6.98628 7.17903 7.65324 7.78738 7.99237 8.06959 8.37989 8.40695 9.03937 9.62824 11.12263 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.007929 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.146650 B = 3530.274230 C = 4467.584439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.035 3.965 10 C -0.077 4.077 11 C -0.053 4.053 12 C -0.116 4.116 13 C -0.114 4.114 14 C -0.133 4.133 15 C -0.114 4.114 16 C 0.146 3.854 17 N -0.597 5.597 18 C 0.375 3.625 19 N -0.579 5.579 20 C 0.025 3.975 21 C 0.082 3.918 22 H 0.260 0.740 23 H 0.020 0.980 24 H 0.015 0.985 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.183 0.817 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -14.459 -1.882 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.002 4.002 10 C -0.115 4.115 11 C -0.054 4.054 12 C -0.135 4.135 13 C -0.132 4.132 14 C -0.152 4.152 15 C -0.134 4.134 16 C 0.054 3.946 17 N -0.317 5.317 18 C 0.078 3.922 19 N -0.304 5.304 20 C -0.105 4.105 21 C -0.041 4.041 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.033 0.967 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.199 0.801 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.694 -13.761 -2.597 14.106 hybrid contribution 0.825 0.403 0.617 1.106 sum 2.519 -13.358 -1.980 13.737 Atomic orbital electron populations 1.69947 1.05970 1.26600 1.50559 1.24971 0.94827 0.99099 0.95198 0.86629 0.79813 0.83624 0.78155 1.20610 1.21199 1.19983 1.21166 0.92856 0.90927 1.50953 0.92933 1.19043 0.93534 0.90256 0.97371 1.20797 0.98519 0.91116 1.01053 1.20763 0.96108 0.96575 0.91976 1.21040 0.99642 0.95143 0.97657 1.21152 0.98209 0.95941 0.97873 1.20883 1.01846 1.00267 0.92196 1.21317 0.98953 0.94796 0.98292 1.17099 1.00674 0.92680 0.84098 1.45277 1.21437 1.43768 1.21180 1.24679 0.94875 0.84094 0.88514 1.74249 1.11525 1.28017 1.16595 1.23049 0.94603 0.96039 0.96807 1.22628 0.89112 0.99893 0.92455 0.92988 0.96155 0.96702 0.92375 0.92352 0.85739 0.86257 0.86259 0.86339 0.80051 0.90405 0.89925 0.91598 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.89 4.96 -27.88 -0.14 0.75 16 10 C -0.08 -1.60 4.98 -27.88 -0.14 -1.74 16 11 C -0.05 -0.93 5.15 -104.42 -0.54 -1.47 16 12 C -0.12 -1.79 9.68 -39.61 -0.38 -2.18 16 13 C -0.11 -1.47 10.04 -39.55 -0.40 -1.87 16 14 C -0.13 -1.65 10.04 -39.61 -0.40 -2.05 16 15 C -0.11 -1.58 9.97 -39.39 -0.39 -1.97 16 16 C 0.15 2.39 5.75 -83.72 -0.48 1.91 16 17 N -0.60 -9.95 2.14 -114.78 -0.25 -10.20 16 18 C 0.37 6.86 10.60 -90.91 -0.96 5.90 16 19 N -0.58 -11.01 11.60 -61.71 -0.72 -11.72 16 20 C 0.02 0.38 8.05 -3.15 -0.03 0.36 16 21 C 0.08 1.20 7.48 -2.97 -0.02 1.18 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.02 0.54 6.34 -51.93 -0.33 0.21 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 26 H 0.06 1.23 6.86 -51.93 -0.36 0.88 16 27 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.18 3.28 7.89 -52.49 -0.41 2.86 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.03 7.58 -51.93 -0.39 0.63 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -31.32 296.71 -9.90 -41.22 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.83 Total: -0.07 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -4.29 Total: -14.61 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.22 Total: -47.99 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.32 -9.90 -41.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260223423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.643 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds