Wall clock time and date at job start Mon Mar 30 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00085 * 2 1 4 4 H 1.48505 * 109.47031 * 270.00410 * 3 2 1 5 5 H 1.48503 * 109.46744 * 29.99946 * 3 2 1 6 6 H 1.48498 * 109.47135 * 149.99899 * 3 2 1 7 7 C 1.37878 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00151 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46952 * 179.97438 * 10 9 7 12 12 C 1.38131 * 120.03751 * 265.29755 * 11 10 9 13 13 C 1.38263 * 120.06865 * 180.27886 * 12 11 10 14 14 C 1.38303 * 120.15125 * 359.72222 * 13 12 11 15 15 C 1.38087 * 120.06761 * 359.97438 * 14 13 12 16 16 C 1.38876 * 120.03483 * 85.00291 * 11 10 9 17 17 N 1.39845 * 120.07277 * 359.97438 * 16 11 10 18 18 C 1.36437 * 125.84458 * 269.75288 * 17 16 11 19 19 N 1.28263 * 114.55081 * 179.72585 * 18 17 16 20 20 C 1.46966 * 110.20048 * 0.27630 * 19 18 17 21 21 C 1.47292 * 125.83766 * 89.94253 * 17 16 11 22 22 H 0.96994 * 119.99876 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47392 * 59.99648 * 9 7 2 24 24 H 1.09004 * 109.46849 * 300.00258 * 9 7 2 25 25 H 1.09003 * 109.46996 * 60.00209 * 10 9 7 26 26 H 1.08996 * 109.47084 * 299.99798 * 10 9 7 27 27 H 1.07997 * 119.96590 * 359.97438 * 12 11 10 28 28 H 1.08004 * 119.92298 * 179.74621 * 13 12 11 29 29 H 1.07999 * 119.97036 * 179.97438 * 14 13 12 30 30 H 1.08000 * 120.03445 * 180.02562 * 15 14 13 31 31 H 1.08002 * 122.72720 * 0.02562 * 18 17 16 32 32 H 1.08998 * 110.55134 * 118.58943 * 20 19 18 33 33 H 1.09003 * 110.54748 * 241.25600 * 20 19 18 34 34 H 1.08998 * 110.89785 * 61.73970 * 21 17 16 35 35 H 1.09002 * 110.65035 * 298.59155 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 0.0001 12 6 1.2315 -5.6147 1.1922 13 6 0.5452 -6.8150 1.1930 14 6 0.1123 -7.3685 0.0018 15 6 0.3640 -6.7232 -1.1928 16 6 1.0532 -5.5172 -1.1973 17 7 1.3094 -4.8609 -2.4053 18 6 0.4992 -3.9389 -3.0011 19 7 0.9494 -3.4687 -4.1063 20 6 2.2461 -4.0814 -4.4276 21 6 2.4982 -5.0497 -3.2541 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 0.8895 26 1 2.8720 -3.6044 -0.8905 27 1 1.5685 -5.1854 2.1240 28 1 0.3465 -7.3213 2.1261 29 1 -0.4231 -8.3064 0.0059 30 1 0.0253 -7.1557 -2.1226 31 1 -0.4424 -3.6265 -2.5743 32 1 2.1883 -4.6279 -5.3689 33 1 3.0268 -3.3221 -4.4745 34 1 2.5625 -6.0779 -3.6102 35 1 3.4039 -4.7730 -2.7143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260223423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:59 Heat of formation + Delta-G solvation = 37.155811 kcal Electronic energy + Delta-G solvation = -17347.282347 eV Core-core repulsion = 14730.525154 eV Total energy + Delta-G solvation = -2616.757193 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.51522 -39.60197 -35.97001 -34.36094 -33.75104 -31.00016 -30.71732 -29.72707 -26.91302 -24.17273 -23.69905 -22.79147 -22.02521 -21.02877 -18.77576 -18.43325 -17.23573 -16.60352 -16.51519 -15.89427 -15.41239 -15.21044 -14.66010 -14.45552 -14.29072 -14.04731 -13.62390 -13.25360 -13.10539 -13.07845 -12.89910 -12.62132 -12.50731 -12.34298 -11.95450 -11.63490 -11.59076 -11.15331 -10.93105 -10.55243 -9.71380 -9.46012 -8.89505 -8.20586 -6.30939 0.33730 0.50198 1.36088 1.37862 1.47783 1.63166 2.19914 2.38645 2.81630 3.12791 3.62300 3.81122 3.99074 4.01068 4.16126 4.24583 4.39185 4.44775 4.59595 4.65483 4.74005 4.77413 4.84847 4.97681 5.04373 5.10000 5.23652 5.43901 5.46702 5.54319 5.58923 5.61792 5.83151 5.85390 6.02240 6.22665 6.77038 6.83768 7.03820 7.37376 8.90359 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.007929 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.146650 B = 3530.274230 C = 4467.584439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.052 0.948 9 C 0.045 3.955 10 C -0.060 4.060 11 C -0.085 4.085 12 C -0.127 4.127 13 C -0.107 4.107 14 C -0.118 4.118 15 C -0.112 4.112 16 C 0.129 3.871 17 N -0.597 5.597 18 C 0.368 3.632 19 N -0.614 5.614 20 C 0.024 3.976 21 C 0.085 3.915 22 H 0.263 0.737 23 H 0.001 0.999 24 H -0.013 1.013 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.126 0.874 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.137 0.863 31 H 0.172 0.828 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.312 -16.371 -1.639 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.070 0.930 9 C 0.008 3.992 10 C -0.097 4.097 11 C -0.086 4.086 12 C -0.146 4.146 13 C -0.125 4.125 14 C -0.136 4.136 15 C -0.132 4.132 16 C 0.039 3.961 17 N -0.316 5.316 18 C 0.071 3.929 19 N -0.340 5.340 20 C -0.106 4.106 21 C -0.038 4.038 22 H 0.072 0.928 23 H 0.019 0.981 24 H 0.005 0.995 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.144 0.856 28 H 0.171 0.829 29 H 0.176 0.824 30 H 0.155 0.845 31 H 0.189 0.811 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.054 -15.694 -2.343 16.001 hybrid contribution 0.682 0.921 0.567 1.278 sum 2.735 -14.774 -1.775 15.129 Atomic orbital electron populations 1.70070 1.07513 1.27606 1.51374 1.25855 0.95732 1.02895 0.94732 0.85571 0.78874 0.79085 0.78283 1.20295 1.20379 1.18806 1.21598 0.93118 0.92511 1.50800 0.92993 1.18840 0.93786 0.91632 0.94953 1.20426 0.97396 0.91485 1.00405 1.20569 0.98291 0.96003 0.93785 1.21192 1.00227 0.96306 0.96839 1.21524 0.96518 0.94652 0.99760 1.21361 1.00155 1.01005 0.91110 1.21537 0.98011 0.93693 0.99951 1.17324 1.01656 0.93777 0.83381 1.45359 1.21566 1.43266 1.21372 1.24574 0.95024 0.84638 0.88671 1.74194 1.13524 1.29067 1.17249 1.23149 0.92894 0.96222 0.98310 1.22731 0.88137 1.01257 0.91665 0.92831 0.98087 0.99458 0.92466 0.93395 0.85632 0.82863 0.82356 0.84487 0.81084 0.87965 0.90575 0.88599 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.96 45.67 29.54 68.60 2.03 47.69 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.54 -31.65 9.11 25.60 0.23 -31.42 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 9 C 0.04 2.40 4.96 29.85 0.15 2.55 16 10 C -0.06 -2.55 4.98 29.85 0.15 -2.40 16 11 C -0.08 -3.01 5.15 -19.74 -0.10 -3.11 16 12 C -0.13 -3.78 9.68 22.25 0.22 -3.57 16 13 C -0.11 -2.40 10.04 22.29 0.22 -2.17 16 14 C -0.12 -2.43 10.04 22.25 0.22 -2.21 16 15 C -0.11 -2.80 9.97 22.40 0.22 -2.58 16 16 C 0.13 4.15 5.75 38.18 0.22 4.37 16 17 N -0.60 -19.84 2.14 -517.06 -1.10 -20.95 16 18 C 0.37 13.87 10.60 180.45 1.91 15.78 16 19 N -0.61 -23.82 11.60 -349.14 -4.05 -27.87 16 20 C 0.02 0.72 8.05 86.70 0.70 1.42 16 21 C 0.08 2.39 7.48 86.64 0.65 3.04 16 22 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 23 H 0.00 0.05 6.34 -2.39 -0.02 0.03 16 24 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 25 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 26 H 0.05 2.09 6.86 -2.39 -0.02 2.08 16 27 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 28 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.17 6.59 7.89 -2.91 -0.02 6.57 16 32 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 1.89 7.58 -2.39 -0.02 1.87 16 Total: -1.00 -69.18 296.71 3.48 -65.71 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.06 Total: 11.70 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 5.25 Total: -19.47 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -4.87 Total: -105.63 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -69.18 3.48 -65.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260223423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.862 kcal (2) G-P(sol) polarization free energy of solvation -69.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds