Wall clock time and date at job start Mon Mar 30 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38725 * 119.77941 * 2 1 4 4 C 1.37722 * 120.51772 * 180.02562 * 3 2 1 5 5 C 1.39678 * 119.77530 * 359.97438 * 4 3 2 6 6 N 1.35896 * 133.49949 * 180.02562 * 5 4 3 7 7 C 1.30095 * 109.73482 * 179.97438 * 6 5 4 8 8 C 1.50699 * 124.97887 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47111 * 299.97378 * 8 7 6 10 10 C 1.52992 * 109.47367 * 59.97791 * 8 7 6 11 11 N 1.36533 * 110.03751 * 359.75345 * 7 6 5 12 12 C 1.37310 * 126.40059 * 180.29973 * 11 7 6 13 13 H 1.07996 * 120.00408 * 320.56122 * 12 11 7 14 14 C 1.38913 * 119.99917 * 140.55942 * 12 11 7 15 15 N 1.31382 * 120.00127 * 156.49600 * 14 12 11 16 16 Si 1.86797 * 119.99950 * 336.49339 * 14 12 11 17 17 H 1.48501 * 109.47206 * 95.40807 * 16 14 12 18 18 H 1.48502 * 109.47267 * 215.40987 * 16 14 12 19 19 H 1.48499 * 109.47293 * 335.40985 * 16 14 12 20 20 C 1.38396 * 107.20148 * 0.39842 * 11 7 6 21 21 C 1.37956 * 119.78377 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47423 * 269.97809 * 1 2 3 23 23 H 1.09002 * 109.47285 * 29.98232 * 1 2 3 24 24 H 1.09006 * 109.47113 * 149.97809 * 1 2 3 25 25 H 1.08001 * 119.74354 * 0.04248 * 3 2 1 26 26 H 1.07997 * 120.10753 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.46915 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.46727 * 60.00501 * 9 8 7 29 29 H 1.09002 * 109.46923 * 180.02562 * 9 8 7 30 30 H 1.09000 * 109.47219 * 300.00034 * 9 8 7 31 31 H 1.08999 * 109.47403 * 59.99772 * 10 8 7 32 32 H 1.09002 * 109.47314 * 179.97438 * 10 8 7 33 33 H 1.09000 * 109.47269 * 299.99987 * 10 8 7 34 34 H 0.96996 * 120.00228 * 179.97438 * 15 14 12 35 35 H 1.07998 * 120.08516 * 359.95568 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.2041 0.0000 4 6 3.5730 1.2218 -0.0005 5 6 4.2822 0.0185 -0.0005 6 7 5.6064 -0.2869 -0.0005 7 6 5.7593 -1.5789 0.0000 8 6 7.0871 -2.2917 0.0007 9 6 7.8777 -1.8984 -1.2487 10 6 7.8774 -1.8966 1.2498 11 7 4.5405 -2.1942 0.0059 12 6 4.3112 -3.5480 0.0140 13 1 4.9320 -4.2044 -0.5777 14 6 3.2807 -4.0733 0.7833 15 7 2.7542 -5.2356 0.4704 16 14 2.6438 -3.1272 2.2626 17 1 1.4545 -2.3311 1.8664 18 1 2.2655 -4.0818 3.3354 19 1 3.7050 -2.2164 2.7622 20 6 3.5793 -1.1984 0.0000 21 6 2.1922 -1.1973 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5136 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6482 2.1348 0.0007 26 1 4.1027 2.1630 -0.0009 27 1 6.9211 -3.3690 0.0016 28 1 8.0438 -0.8211 -1.2494 29 1 8.8379 -2.4144 -1.2484 30 1 7.3147 -2.1800 -2.1386 31 1 7.3141 -2.1768 2.1399 32 1 8.8376 -2.4126 1.2505 33 1 8.0434 -0.8193 1.2490 34 1 2.0349 -5.6026 1.0078 35 1 1.6501 -2.1314 -0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260284654.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:06 Heat of formation + Delta-G solvation = 52.177721 kcal Electronic energy + Delta-G solvation = -17804.063560 eV Core-core repulsion = 15187.957765 eV Total energy + Delta-G solvation = -2616.105794 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14029 -37.10213 -34.56743 -34.03016 -31.94707 -30.40501 -29.21162 -26.68907 -25.63582 -25.11249 -22.86249 -20.84947 -20.58161 -18.82683 -17.74554 -16.40510 -15.74989 -14.75640 -14.38492 -14.20232 -13.87193 -13.52275 -13.28030 -13.11331 -12.85683 -12.64766 -12.38740 -11.76039 -11.73065 -11.39273 -11.20024 -11.18708 -10.90718 -10.81811 -10.45223 -10.36041 -10.32967 -10.02279 -9.74939 -8.96017 -8.76970 -7.40561 -7.05880 -6.93209 -4.58529 1.83232 2.42998 2.97279 3.09927 3.21451 3.73813 3.90187 4.13406 4.61126 4.75217 5.01593 5.49011 5.50881 5.56040 5.67859 5.69615 5.85537 6.01557 6.03324 6.04314 6.17957 6.21319 6.29750 6.31362 6.37222 6.50657 6.55742 6.63682 6.71075 6.80798 6.91155 7.19987 7.33932 7.51964 7.58286 7.86174 7.96319 8.57157 9.02670 9.13874 10.12804 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.012396 C = 0.008427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.339838 B = 2258.304140 C = 3322.003096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.113 4.113 3 C -0.140 4.140 4 C -0.077 4.077 5 C 0.033 3.967 6 N -0.519 5.519 7 C 0.234 3.766 8 C -0.006 4.006 9 C -0.135 4.135 10 C -0.134 4.134 11 N -0.305 5.305 12 C -0.360 4.360 13 H 0.120 0.880 14 C 0.087 3.913 15 N -0.826 5.826 16 Si 0.865 3.135 17 H -0.244 1.244 18 H -0.281 1.281 19 H -0.260 1.260 20 C 0.012 3.988 21 C -0.088 4.088 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.285 0.715 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 5.757 0.482 5.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.161 4.161 4 C -0.097 4.097 5 C -0.091 4.091 6 N -0.241 5.241 7 C -0.028 4.028 8 C -0.027 4.027 9 C -0.193 4.193 10 C -0.192 4.192 11 N 0.024 4.976 12 C -0.487 4.487 13 H 0.138 0.862 14 C -0.127 4.127 15 N -0.455 5.455 16 Si 0.689 3.311 17 H -0.168 1.168 18 H -0.207 1.207 19 H -0.184 1.184 20 C -0.102 4.102 21 C -0.108 4.108 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.581 5.921 0.505 6.150 hybrid contribution -1.107 -0.526 0.769 1.447 sum 0.474 5.395 1.274 5.564 Atomic orbital electron populations 1.20614 0.91913 1.01830 1.01319 1.19310 0.95069 0.92346 1.04841 1.20452 0.93284 0.96602 1.05750 1.19963 0.92851 0.95007 1.01895 1.18893 0.89855 0.92752 1.07594 1.70151 1.16210 1.11897 1.25829 1.23302 0.88103 0.88143 1.03232 1.19462 0.87673 0.99273 0.96255 1.21741 0.98775 1.02092 0.96693 1.21717 0.98735 1.02003 0.96761 1.41479 1.03455 1.05535 1.47164 1.19195 1.19659 0.78944 1.30896 0.86244 1.25339 0.94380 0.95641 0.97320 1.69764 1.21160 1.18314 1.36221 0.87075 0.81836 0.80189 0.82018 1.16841 1.20734 1.18364 1.18920 0.91766 0.89683 1.09857 1.19902 0.90631 0.97882 1.02361 0.92265 0.92127 0.92230 0.86798 0.86753 0.89143 0.91862 0.92598 0.92970 0.92891 0.92553 0.91910 0.90432 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 10.00 36.00 0.36 -1.20 16 2 C -0.11 -2.24 5.88 -104.55 -0.62 -2.85 16 3 C -0.14 -2.60 9.66 -39.59 -0.38 -2.98 16 4 C -0.08 -1.58 10.10 -39.23 -0.40 -1.98 16 5 C 0.03 0.80 7.22 -84.66 -0.61 0.19 16 6 N -0.52 -12.38 11.26 -8.11 -0.09 -12.47 16 7 C 0.23 5.47 6.34 -154.37 -0.98 4.49 16 8 C -0.01 -0.12 3.25 -91.78 -0.30 -0.42 16 9 C -0.13 -2.17 9.17 37.16 0.34 -1.83 16 10 C -0.13 -2.21 9.17 37.15 0.34 -1.87 16 11 N -0.31 -7.81 2.44 -56.65 -0.14 -7.94 16 12 C -0.36 -9.51 9.57 -14.85 -0.14 -9.66 16 13 H 0.12 3.22 7.71 -52.49 -0.40 2.81 16 14 C 0.09 2.28 4.92 -17.49 -0.09 2.20 16 15 N -0.83 -21.87 13.95 55.49 0.77 -21.10 16 16 Si 0.86 20.73 24.49 -169.99 -4.16 16.56 16 17 H -0.24 -5.59 5.51 56.52 0.31 -5.28 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.26 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.01 0.30 5.27 -83.86 -0.44 -0.14 16 21 C -0.09 -2.03 6.53 -39.51 -0.26 -2.29 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 24 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 25 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.09 1.74 7.10 -51.93 -0.37 1.37 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.29 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.12 2.78 5.83 -52.49 -0.31 2.48 16 LS Contribution 287.18 15.07 4.33 4.33 Total: -1.00 -28.94 287.18 -7.41 -36.35 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.95 Total: 2.61 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -3.17 Total: -18.34 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.54 Total: -41.51 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.16 Total: 16.56 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.94 -7.41 -36.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260284654.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.526 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds