Wall clock time and date at job start Mon Mar 30 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38725 * 119.77941 * 2 1 4 4 C 1.37722 * 120.51772 * 180.02562 * 3 2 1 5 5 C 1.39678 * 119.77530 * 359.97438 * 4 3 2 6 6 N 1.35896 * 133.49949 * 180.02562 * 5 4 3 7 7 C 1.30095 * 109.73482 * 179.97438 * 6 5 4 8 8 C 1.50699 * 124.97887 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47111 * 299.97378 * 8 7 6 10 10 C 1.52992 * 109.47367 * 59.97791 * 8 7 6 11 11 N 1.36533 * 110.03751 * 359.75345 * 7 6 5 12 12 C 1.37310 * 126.40059 * 180.29973 * 11 7 6 13 13 H 1.07996 * 120.00408 * 320.56122 * 12 11 7 14 14 C 1.38913 * 119.99917 * 140.55942 * 12 11 7 15 15 N 1.31382 * 120.00127 * 156.49600 * 14 12 11 16 16 Si 1.86797 * 119.99950 * 336.49339 * 14 12 11 17 17 H 1.48501 * 109.47206 * 95.40807 * 16 14 12 18 18 H 1.48502 * 109.47267 * 215.40987 * 16 14 12 19 19 H 1.48499 * 109.47293 * 335.40985 * 16 14 12 20 20 C 1.38396 * 107.20148 * 0.39842 * 11 7 6 21 21 C 1.37956 * 119.78377 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47423 * 269.97809 * 1 2 3 23 23 H 1.09002 * 109.47285 * 29.98232 * 1 2 3 24 24 H 1.09006 * 109.47113 * 149.97809 * 1 2 3 25 25 H 1.08001 * 119.74354 * 0.04248 * 3 2 1 26 26 H 1.07997 * 120.10753 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.46915 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.46727 * 60.00501 * 9 8 7 29 29 H 1.09002 * 109.46923 * 180.02562 * 9 8 7 30 30 H 1.09000 * 109.47219 * 300.00034 * 9 8 7 31 31 H 1.08999 * 109.47403 * 59.99772 * 10 8 7 32 32 H 1.09002 * 109.47314 * 179.97438 * 10 8 7 33 33 H 1.09000 * 109.47269 * 299.99987 * 10 8 7 34 34 H 0.96996 * 120.00228 * 179.97438 * 15 14 12 35 35 H 1.07998 * 120.08516 * 359.95568 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.2041 0.0000 4 6 3.5730 1.2218 -0.0005 5 6 4.2822 0.0185 -0.0005 6 7 5.6064 -0.2869 -0.0005 7 6 5.7593 -1.5789 0.0000 8 6 7.0871 -2.2917 0.0007 9 6 7.8777 -1.8984 -1.2487 10 6 7.8774 -1.8966 1.2498 11 7 4.5405 -2.1942 0.0059 12 6 4.3112 -3.5480 0.0140 13 1 4.9320 -4.2044 -0.5777 14 6 3.2807 -4.0733 0.7833 15 7 2.7542 -5.2356 0.4704 16 14 2.6438 -3.1272 2.2626 17 1 1.4545 -2.3311 1.8664 18 1 2.2655 -4.0818 3.3354 19 1 3.7050 -2.2164 2.7622 20 6 3.5793 -1.1984 0.0000 21 6 2.1922 -1.1973 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5136 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6482 2.1348 0.0007 26 1 4.1027 2.1630 -0.0009 27 1 6.9211 -3.3690 0.0016 28 1 8.0438 -0.8211 -1.2494 29 1 8.8379 -2.4144 -1.2484 30 1 7.3147 -2.1800 -2.1386 31 1 7.3141 -2.1768 2.1399 32 1 8.8376 -2.4126 1.2505 33 1 8.0434 -0.8193 1.2490 34 1 2.0349 -5.6026 1.0078 35 1 1.6501 -2.1314 -0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260284654.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:05 Heat of formation + Delta-G solvation = 36.082968 kcal Electronic energy + Delta-G solvation = -17804.761480 eV Core-core repulsion = 15187.957765 eV Total energy + Delta-G solvation = -2616.803715 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.90001 -38.70399 -36.22343 -35.73125 -33.81513 -31.94928 -30.87108 -28.00905 -27.28487 -26.89803 -24.42013 -22.55667 -22.23096 -20.58630 -19.55210 -18.09516 -17.57105 -16.46755 -16.08450 -15.96100 -15.42139 -15.06916 -14.89803 -14.81355 -14.35325 -14.31316 -13.81873 -13.30957 -13.10305 -12.97074 -12.84437 -12.74542 -12.39464 -12.31814 -12.15801 -12.01637 -11.93225 -11.68593 -11.49667 -10.80839 -10.64005 -9.15034 -8.92684 -8.74408 -6.60059 0.15312 0.76879 1.07120 1.14707 1.25483 1.94029 1.96851 2.36913 2.70474 3.04107 3.40776 3.87671 4.07080 4.12250 4.23374 4.26440 4.41084 4.54669 4.66462 4.70753 4.83281 4.83594 4.88089 4.89753 4.96604 5.01506 5.10887 5.13804 5.27511 5.36740 5.37992 5.48609 5.65137 5.75796 5.91621 5.97878 6.22407 6.60380 7.16718 7.30072 8.18576 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.012396 C = 0.008427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.339838 B = 2258.304140 C = 3322.003096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.099 4.099 3 C -0.127 4.127 4 C -0.081 4.081 5 C 0.003 3.997 6 N -0.529 5.529 7 C 0.228 3.772 8 C -0.014 4.014 9 C -0.124 4.124 10 C -0.125 4.125 11 N -0.331 5.331 12 C -0.372 4.372 13 H 0.099 0.901 14 C 0.063 3.937 15 N -0.856 5.856 16 Si 0.911 3.089 17 H -0.228 1.228 18 H -0.268 1.268 19 H -0.291 1.291 20 C -0.014 4.014 21 C -0.126 4.126 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.057 0.943 25 H 0.165 0.835 26 H 0.142 0.858 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.293 0.707 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 8.088 0.800 8.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.102 4.102 3 C -0.147 4.147 4 C -0.101 4.101 5 C -0.120 4.120 6 N -0.251 5.251 7 C -0.035 4.035 8 C -0.034 4.034 9 C -0.182 4.182 10 C -0.183 4.183 11 N -0.004 5.004 12 C -0.499 4.499 13 H 0.117 0.883 14 C -0.149 4.149 15 N -0.487 5.487 16 Si 0.735 3.265 17 H -0.152 1.152 18 H -0.193 1.193 19 H -0.217 1.217 20 C -0.127 4.127 21 C -0.146 4.146 22 H 0.093 0.907 23 H 0.114 0.886 24 H 0.076 0.924 25 H 0.182 0.818 26 H 0.160 0.840 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.845 8.262 0.818 8.346 hybrid contribution -0.895 -1.084 0.601 1.529 sum -0.050 7.178 1.420 7.318 Atomic orbital electron populations 1.20742 0.88611 1.03597 1.02792 1.19946 0.97501 0.91538 1.01202 1.21008 0.92701 0.98053 1.02981 1.20439 0.93908 0.94809 1.00930 1.19515 0.90010 0.93848 1.08604 1.70156 1.16470 1.12010 1.26414 1.24198 0.89080 0.88445 1.01752 1.19734 0.86557 0.98274 0.98831 1.21675 0.99756 1.02305 0.94482 1.21672 0.99787 1.02283 0.94573 1.41582 1.04445 1.05216 1.49187 1.19040 1.19966 0.79686 1.31209 0.88346 1.25723 0.94505 0.96145 0.98500 1.69782 1.22259 1.19322 1.37368 0.86411 0.80954 0.79089 0.80087 1.15171 1.19343 1.21690 1.19419 0.92742 0.90075 1.10488 1.20046 0.90112 0.98815 1.05671 0.90736 0.88604 0.92355 0.81802 0.84032 0.90227 0.92040 0.88910 0.94390 0.94740 0.88749 0.92040 0.89668 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.73 10.00 71.23 0.71 -2.02 16 2 C -0.10 -3.66 5.88 -19.82 -0.12 -3.77 16 3 C -0.13 -4.19 9.66 22.26 0.22 -3.97 16 4 C -0.08 -3.11 10.10 22.50 0.23 -2.88 16 5 C 0.00 0.14 7.22 39.42 0.28 0.42 16 6 N -0.53 -25.41 11.26 -179.56 -2.02 -27.43 16 7 C 0.23 10.93 6.34 137.76 0.87 11.80 16 8 C -0.01 -0.52 3.25 -11.54 -0.04 -0.56 16 9 C -0.12 -3.91 9.17 71.98 0.66 -3.25 16 10 C -0.13 -4.05 9.17 71.98 0.66 -3.39 16 11 N -0.33 -17.58 2.44 -333.13 -0.81 -18.39 16 12 C -0.37 -20.68 9.57 84.00 0.80 -19.87 16 13 H 0.10 5.68 7.71 -2.91 -0.02 5.66 16 14 C 0.06 3.39 4.92 84.92 0.42 3.81 16 15 N -0.86 -46.77 13.95 21.65 0.30 -46.47 16 16 Si 0.91 43.84 24.49 68.60 1.68 45.52 16 17 H -0.23 -10.25 5.51 99.48 0.55 -9.71 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.29 -15.39 7.11 99.48 0.71 -14.68 16 20 C -0.01 -0.73 5.27 38.78 0.20 -0.52 16 21 C -0.13 -5.81 6.53 22.32 0.15 -5.67 16 22 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 23 H 0.10 1.95 8.08 -2.39 -0.02 1.93 16 24 H 0.06 1.61 8.08 -2.38 -0.02 1.59 16 25 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 26 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 27 H 0.08 3.18 7.10 -2.39 -0.02 3.16 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.29 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.10 4.88 5.83 -2.91 -0.02 4.86 16 Total: -1.00 -65.53 287.18 5.11 -60.42 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.91 Total: 16.22 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 5.05 Total: -29.87 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -2.53 Total: -92.29 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.68 Total: 45.52 kcal Total: -65.53 5.11 -60.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260284654.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.504 kcal (2) G-P(sol) polarization free energy of solvation -65.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds