Wall clock time and date at job start Mon Mar 30 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30242 * 126.10826 * 2 1 4 4 N 1.39867 * 110.09483 * 180.13461 * 3 2 1 5 5 C 1.46499 * 125.46251 * 179.83745 * 4 3 2 6 6 C 1.37041 * 109.07920 * 359.57048 * 4 3 2 7 7 C 1.40847 * 106.72811 * 0.24493 * 6 4 3 8 8 C 1.39905 * 119.65817 * 179.97438 * 7 6 4 9 9 C 1.36506 * 119.62842 * 0.02562 * 8 7 6 10 10 C 1.38921 * 120.63392 * 359.97438 * 9 8 7 11 11 C 1.36632 * 120.81079 * 0.02603 * 10 9 8 12 12 C 1.50701 * 120.07309 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47132 * 172.49252 * 12 11 10 14 14 C 1.53003 * 109.46913 * 52.49639 * 12 11 10 15 15 C 1.50690 * 109.47123 * 292.49594 * 12 11 10 16 16 H 1.08007 * 120.00128 * 6.05400 * 15 12 11 17 17 C 1.37881 * 120.00206 * 186.05837 * 15 12 11 18 18 N 1.31515 * 119.99719 * 21.01214 * 17 15 12 19 19 Si 1.86795 * 120.00063 * 201.01852 * 17 15 12 20 20 H 1.48504 * 109.47413 * 94.78243 * 19 17 15 21 21 H 1.48502 * 109.47107 * 214.77909 * 19 17 15 22 22 H 1.48494 * 109.47294 * 334.77694 * 19 17 15 23 23 H 1.09003 * 109.47125 * 270.32922 * 1 2 3 24 24 H 1.09002 * 109.47394 * 30.32954 * 1 2 3 25 25 H 1.08996 * 109.47457 * 150.33289 * 1 2 3 26 26 H 1.08999 * 109.47080 * 262.52102 * 5 4 3 27 27 H 1.09000 * 109.46831 * 22.51681 * 5 4 3 28 28 H 1.08998 * 109.47353 * 142.51744 * 5 4 3 29 29 H 1.07999 * 120.18784 * 180.02562 * 8 7 6 30 30 H 1.08005 * 119.68119 * 179.97438 * 9 8 7 31 31 H 1.07998 * 119.59648 * 180.02562 * 10 9 8 32 32 H 1.09004 * 109.46841 * 293.28055 * 14 12 11 33 33 H 1.08994 * 109.47625 * 53.27997 * 14 12 11 34 34 H 1.09000 * 109.47172 * 173.28669 * 14 12 11 35 35 H 0.97005 * 119.99808 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0522 0.0000 4 7 3.6189 0.6664 -0.0031 5 6 4.7650 1.5789 -0.0074 6 6 3.6922 -0.7020 0.0046 7 6 2.3670 -1.1790 0.0069 8 6 2.1273 -2.5574 0.0139 9 6 3.1808 -3.4255 0.0191 10 6 4.4872 -2.9532 0.0169 11 6 4.7465 -1.6117 0.0100 12 6 6.1702 -1.1177 0.0082 13 1 6.1795 -0.0367 -0.1317 14 6 6.9405 -1.7862 -1.1322 15 6 6.8222 -1.4597 1.3231 16 1 6.2959 -2.0666 2.0451 17 6 8.0904 -0.9978 1.6045 18 7 8.5691 0.0437 0.9595 19 14 9.1288 -1.8512 2.9016 20 1 10.0156 -2.8477 2.2490 21 1 9.9558 -0.8448 3.6146 22 1 8.2408 -2.5396 3.8725 23 1 -0.3633 0.0059 1.0277 24 1 -0.3634 0.8870 -0.5189 25 1 -0.3634 -0.8929 -0.5086 26 1 5.1299 1.6991 -1.0274 27 1 4.4590 2.5484 0.3857 28 1 5.5589 1.1680 0.6164 29 1 1.1146 -2.9325 0.0153 30 1 2.9967 -4.4897 0.0250 31 1 5.3081 -3.6550 0.0206 32 1 7.0339 -2.8534 -0.9309 33 1 6.4033 -1.6388 -2.0690 34 1 7.9333 -1.3428 -1.2090 35 1 9.4615 0.3684 1.1573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260315975.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:42 Heat of formation + Delta-G solvation = 62.112717 kcal Electronic energy + Delta-G solvation = -17567.877046 eV Core-core repulsion = 14952.202066 eV Total energy + Delta-G solvation = -2615.674980 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.18880 -38.48845 -36.40971 -34.69386 -33.02317 -30.78024 -30.40371 -29.63930 -27.15387 -26.14900 -24.38631 -22.77036 -22.14943 -19.99527 -18.33895 -17.61741 -17.48595 -16.50029 -16.44684 -15.94747 -15.35035 -14.80217 -14.37851 -14.33514 -14.18000 -13.73711 -13.55739 -13.49515 -13.17529 -12.98842 -12.80167 -12.76632 -12.60654 -12.27688 -12.18617 -11.71666 -11.63239 -11.17117 -10.97025 -10.55549 -10.29619 -9.43716 -8.53672 -8.16259 -6.17789 0.19105 0.74667 1.38125 1.41978 1.50117 1.57007 1.62797 2.42624 3.04033 3.10688 3.59374 3.67202 3.94272 4.23714 4.33710 4.37651 4.46907 4.59354 4.65451 4.79531 4.82851 4.87612 4.88574 5.00013 5.08939 5.13283 5.15379 5.38513 5.53411 5.58156 5.73612 5.77125 5.87765 6.03839 6.12817 6.23793 6.37815 6.81148 6.85840 7.43753 8.88940 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028003 B = 0.007575 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.659608 B = 3695.638033 C = 4158.004505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.088 3.912 3 N -0.291 5.291 4 N -0.418 5.418 5 C 0.110 3.890 6 C 0.099 3.901 7 C -0.198 4.198 8 C -0.059 4.059 9 C -0.154 4.154 10 C -0.089 4.089 11 C -0.083 4.083 12 C 0.054 3.946 13 H 0.039 0.961 14 C -0.114 4.114 15 C -0.527 4.527 16 H 0.044 0.956 17 C 0.031 3.969 18 N -0.906 5.906 19 Si 0.937 3.063 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.162 0.838 30 H 0.155 0.845 31 H 0.124 0.876 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.032 0.968 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.107 -3.549 -2.793 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 N -0.106 5.106 4 N -0.206 5.206 5 C -0.031 4.031 6 C -0.015 4.015 7 C -0.206 4.206 8 C -0.079 4.079 9 C -0.173 4.173 10 C -0.110 4.110 11 C -0.087 4.087 12 C 0.036 3.964 13 H 0.057 0.943 14 C -0.172 4.172 15 C -0.564 4.564 16 H 0.063 0.937 17 C -0.170 4.170 18 N -0.544 5.544 19 Si 0.763 3.237 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.112 0.888 24 H 0.102 0.898 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.179 0.821 30 H 0.172 0.828 31 H 0.142 0.858 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.753 -2.002 -2.815 13.213 hybrid contribution 1.535 -0.762 0.713 1.856 sum -11.219 -2.765 -2.102 11.744 Atomic orbital electron populations 1.20373 0.82291 1.05040 1.04519 1.24260 0.98342 0.87916 0.98384 1.76332 0.87502 1.25216 1.21544 1.48126 1.03999 1.03221 1.65280 1.21947 0.84891 0.93283 1.02936 1.19135 0.96376 0.84800 1.01181 1.20177 0.90929 0.95773 1.13714 1.20551 1.00690 0.88972 0.97647 1.20975 0.91329 1.01027 1.03972 1.20779 0.97956 0.93801 0.98461 1.19342 0.94556 0.92849 1.01937 1.18062 0.87099 0.96878 0.94348 0.94272 1.21644 0.99271 0.99720 0.96594 1.21199 1.00542 1.32488 1.02187 0.93740 1.25532 0.99005 0.94314 0.98110 1.70111 1.17736 1.21760 1.44768 0.85879 0.79156 0.78999 0.79691 1.19819 1.21210 1.19782 0.88758 0.89788 0.87766 0.91516 0.88722 0.89800 0.82080 0.82776 0.85819 0.93719 0.95362 0.94866 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.24 10.48 71.24 0.75 -0.49 16 2 C 0.09 2.85 7.43 44.79 0.33 3.19 16 3 N -0.29 -11.19 12.40 -43.69 -0.54 -11.73 16 4 N -0.42 -17.80 4.05 -361.05 -1.46 -19.27 16 5 C 0.11 4.42 10.00 127.77 1.28 5.70 16 6 C 0.10 4.30 6.80 39.21 0.27 4.57 16 7 C -0.20 -7.14 6.33 -20.24 -0.13 -7.27 16 8 C -0.06 -1.70 10.07 22.27 0.22 -1.48 16 9 C -0.15 -4.66 9.97 22.03 0.22 -4.44 16 10 C -0.09 -3.44 8.89 22.06 0.20 -3.24 16 11 C -0.08 -3.72 4.72 -20.00 -0.09 -3.82 16 12 C 0.05 2.71 2.13 -12.29 -0.03 2.68 16 13 H 0.04 2.07 3.93 -2.39 -0.01 2.06 16 14 C -0.11 -5.34 8.58 71.98 0.62 -4.72 16 15 C -0.53 -28.68 8.20 25.60 0.21 -28.47 16 16 H 0.04 2.49 7.80 -2.91 -0.02 2.46 16 17 C 0.03 1.68 5.09 84.66 0.43 2.11 16 18 N -0.91 -50.82 12.89 21.45 0.28 -50.55 16 19 Si 0.94 43.03 29.59 68.60 2.03 45.06 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 28 H 0.08 3.91 5.94 -2.39 -0.01 3.90 16 29 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.12 4.66 7.20 -2.91 -0.02 4.64 16 32 H 0.04 1.95 7.25 -2.39 -0.02 1.94 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.03 1.65 7.66 -2.39 -0.02 1.63 16 35 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 Total: -1.00 -65.47 291.98 5.66 -59.82 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.08 Total: 12.35 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 4.27 Total: -35.68 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -1.73 Total: -81.54 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -65.47 5.66 -59.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315975.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.928 kcal (2) G-P(sol) polarization free energy of solvation -65.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds